These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 515 fasta sequence [GAATTTGGGCGCCCCCCTTCCTCTTTCCCCCGCAGCCACAGATCCTGCTTTTCCGTCCCCCACGCGCTAGAATGATCCGGTGCCCGCTCCCANTACCGCGTGGATCCCGGCCACCGCCTATCTGCCCCTCACGCATGTGGATCCGGCGCCGGCGCCCCCTCCCACCGACAATGTGGCCGCACAAGTCAGCCTGGTGGTCTGGTGGGAACTGACACCACGGTTGCATTCTTTTTAATATGGTATAGTTATAATGTAATTACTCCTTCCGTTCCATAATGTAATACCGTATTTCTAGATTCATTACACTATAATATGTCATATCCATCCCAAATCTCTTATATTATGGGATGGAGAGAGTATATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTTAAAAAAAAACTATAGATAC-AAATTCCCTTTCGGATAGAAGGAAGAATAAAAAAGATTACGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BM037867 [GAATTTGGGCGCCCCCCTTCCTCTTTCCCCCGCAGCCACAGATCCTGCTTTTCCGTCCCCCACGCGCTAGAATGATCCGGTGCCCGCTCCCANTACCGCGTGGATCCCGGCCACCGCCTATCTGCCCCTCACGCATGTGGATCCGGCGCCGGCGCCCCCTCCCACCGACAATGTGGCCGCACAAGTCAGCCTGGTGGTCTGGTGGGAACTGACACCACGGTTGCATTCTTTTTAATATGGTATAGTTATAATGTAATTACTCCTTCCGTTCCATAATGTAATACCGTATTTCTAGATTCATTACACTATAATATGTCATATCCATCCCAAATCTCTTATATTATGGGATGGAGAGAGTATATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTTAAAAAAAAACTATAGATAC AAATTCCCTTTCGGATAGAAGGAAGAATAAAAAAGATTACGATGAAAAAAAAAA ] [+] EMBL CA756846 [ TACACTATAATATGTCATATCCATCCAAAATCTCTTATATTATGGGATGGAGAGAGTATATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTT AAAAAAAACTATAGATACAAAATTCCCTTTCGGATAGAAGGAAGAATAAAAAAGATTACGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_4376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [GCCCCCNCCCACCGACAATGTGGCCGCACAAGTCAGCCTGGTGGTCTGGTGGGAACTGACACCACGGTTGCATTCTTTTTAATATGGTATAGTTATAATGTAATTACTCCTTCCGTTCCATAATGTAATACCGTATTTCTAGATTCATTACACTATAATATGTCATATCCATCCAAAATCTCTTATATTATGGGATGGAGAGAGTATATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANAAA] [+] EMBL AU070993 [GCCCCCNCCCACCGACAATGTGGCCGCACAAGTCAGCCTGGTGGTCTGGTGGGAACTGACACCACGGTTGCATTCTTTTTAATATGGTATAGTTATAATGTAATTACTCCTTCCGTTCCATAATGTAATACCGTATTTCTAGATTCATTACACTATAATATGTCATATCCATCCAAAATCTCTTATATTATGGGATGGAGAGAGTATATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4376#0 GAATTTGGGCGCCCCCCTTCCTCTTTCCCCCGCAGCCACAGATCCTGCTTTTCCGTCCCC 60 consensus_4376#1 ------------------------------------------------------------ consensus_4376#0 CACGCGCTAGAATGATCCGGTGCCCGCTCCCANTACCGCGTGGATCCCGGCCACCGCCTA 120 consensus_4376#1 ------------------------------------------------------------ consensus_4376#0 TCTGCCCCTCACGCATGTGGATCCGGCGCCGGCGCCCCCTCCCACCGACAATGTGGCCGC 180 consensus_4376#1 ---------------------------------GCCCCCNCCCACCGACAATGTGGCCGC 27 ****** ******************** consensus_4376#0 ACAAGTCAGCCTGGTGGTCTGGTGGGAACTGACACCACGGTTGCATTCTTTTTAATATGG 240 consensus_4376#1 ACAAGTCAGCCTGGTGGTCTGGTGGGAACTGACACCACGGTTGCATTCTTTTTAATATGG 87 ************************************************************ consensus_4376#0 TATAGTTATAATGTAATTACTCCTTCCGTTCCATAATGTAATACCGTATTTCTAGATTCA 300 consensus_4376#1 TATAGTTATAATGTAATTACTCCTTCCGTTCCATAATGTAATACCGTATTTCTAGATTCA 147 ************************************************************ consensus_4376#0 TTACACTATAATATGTCATATCCATCCCAAATCTCTTATATTATGGGATGGAGAGAGTAT 360 consensus_4376#1 TTACACTATAATATGTCATATCCATCCAAAATCTCTTATATTATGGGATGGAGAGAGTAT 207 *************************** ******************************** consensus_4376#0 ATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTTAAAAAAAA 420 consensus_4376#1 ATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTTAAAAAAAA 267 ************************************************************ consensus_4376#0 ACTATAGATACAAATTCCCTTTCGGATAGAAGGAAGAATAAAAAAGATTACGATGAAAAA 480 consensus_4376#1 A--------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 301 * * ** ** ** ****** * * * ***** consensus_4376#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 515 consensus_4376#1 AAAAAAAAAAAAAAAAAAAAAAAAAANAANAAA-- 334 ************************** ** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||