These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4381#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1122 fasta sequence [TTCTTTTTTTTAGACATGAACAATTTCACTTTCACCATGTGTGTATAGATACAGAATTAGATGGACCCCAAAACCATCAACCATACGAGATTACGAGTCCATCGAATTGTGGTGTGGATTATGAACAGTTAGCTTGATTAATCAAGCAATCAAGCTAGATCATGAGAGCCCATTATACATTCACAAAGTTATAACCAAACACCAAAACTCTTTGATTCTCCTCTCTAGTAATTCATTTCCTGCCCATTATACATACCCACTATCCAATGTTCAAAAATCGTTCAGACATGAACAATTTCACGTATAGATACATAATTTAGATGAACCCCAAAACCATACGATAAGAGTCCATCAAATTGTGGTGTGGATTACGAACAGCTATAGCTTGATTAATTAATCAAATCAAAGCTCAATTGATCAAGCAATGATCAGGAGAGGGTGATGAAGTGGCGGAGCGAGTCGACGAGGCTGGGGGGCCAGTGCTTGGTGTCCCTGACGTAGGCGAGGTCGGTGTAGTGCGGGTCCAGCAGCGTGGCGATGGCGAACTGGTTCTCGGCGAGCAGCGCCGCGTGCTTGTCGGCGTAGAGCGCCGCCGCCAGCGCCGCGTGGATCTCCGGGTAACCCCGCAGCGCCACCGACGCGTCCTCCATCTCCGCGATGGCGTCGTCGCGGTCGCCCACCTCGTACAGCACCAGCGCCCGCCCCACGCGGGCGTACCCCGACAGCGACAGGTCCCCGTACTCCGTCGCCACCGCCGTGAACGACGCCAGCGCCGCCGGGAACTCGCCGCGCGCCTGCAGGTCGCGCCCCAGGTCCAGCAGCCGCACCGCCTACCCGACGCGCCGCGACACCGACGCGCTCGCCGCGCGCTCCGCCGCTGTCACCGGGTCGTAGCTGGTGACGGCGTCGTCGTCCTCGCTGCTCGCCGCGCGGGGCGCCGCGGCGGCGGCGGCGGCGGCGAGGAGCAGGGAGGAGGCGGACGACGCGAGCAGATGCCTCCTCGTCGGGGGCAAGACGAAGCGGCAGGAGGTGGAACAGGTGGTGGTGGGTGGTGGTGGGGGCGGGGGCGCGCCGGCGGCCGAGCTCGCCGGCGTCACGGGCGGTTGCATGGGAAGAGACGAC] [+] EMBL CB666305 [TTCTTTTTTTTAGACATGAACAATTTCACTTTCACCATGTGTGTATAGATACAGAATTAGATGGACCCCAAAACCATCAACCATACGAGATTACGAGTCCATCGAATTGTGGTGTGGATTATGAACAGTTAGCTTGATTAATCAAGCAATCAAGCTAGATCATGAGAGCCCATTATACATTCACAAAGTTATAACCAAACACCAAAACTCTTTGATTCTCCTCTCTAGTAATTCATTTCCTGCCCATTATACATACCCACTATCCAATGTTCAAAAATCGTTCAGACATGAACAATTTCACGTATAGATACATAATTTAGATGAACCCCAAAACCATACGATAAGAGTCCATCAAATTGTGGTGTGGATTACGAACAGCTATAGCTTGATTAATTAATCAAATCAAAGCTCAATTGATCAAGCAATGATCAGGAGAGGGTGATGAAGTGGCGGAGCGAGTCGACGAGGCTGGGGGGCCAGTGCTTGGTGTCCCTGACGTAGGCGAGGTCGGTGTAGTGCGGGTCCAGCAGCGTGGCGATGGCGAACTGGTTCTCGGCGAGCAGCGCCGCGTGCTTGTCGGCGTAGAGCGCCGCCGCCAGCGCCGCGTGGATCTCCGGGTAACCCCGCAGCGCCACCGACGCGTCCTCCATCTCCGCGATGGCGTCGTCGCGGTCGCCCACCTCGTACAGCACCAGCGCCCGCCCCACGCGGGCGTACCCCGACAGCGACAGGTCCCCGTACTCCGTCGCCACCGCCGTGAACGACGCCAGCGCCGCCGGGAACTCGCCGCGCGCCTGCAGGTCG ] [-] EMBL CB666304 [ TTAATTAATCAAATCAAAGCTCAATTGATCAAGCAATGATCAGGAGAGGGTGATGAAGTGGCGGAGCGAGTCGACGAGGCTGGGGGGCCAGTGCTTGGTGTCCCTGACGTAGGCGAGGTCGGTGTAGTGCGGGTCCAGCAGCGTGGCGATGGCGAAATGGTTCTCGGCGAGCAGCGCCGCGTGCTTGTCGGCGTAGAGCGCCGCCGCCAGCGCCGCGTGGATCTCCGGGTAACCCCGCAGCGCCACCGACGCGTCCTCCATCTCCGCGATGGCGTCGTCGCGGTCGCCCACCTCGTACAGCACCAGCGCCCGCCCCACGCGGGCGTACCCCGACAGCGACAGGTCCCCGTACTCCGTCGCCACCGCCGTGAACGACGCCAGCGCCGCCGGGAACTCGCCGCGCGCCTGCAGGTCGCGCCCCAGGTCCAGCAGCCGCACCGCCTACCCGACGCGCCGCGACACCGACGCGCTCGCCGCGCGCTCCGCCGCTGTCACCGGGTCGTAGCTGGTGACGGCGTCGTCGTCCTCGCTGCTCGCCGCGCGGGGCGCCGCGGCGGCGGCGGCGGCGGCGAGGAGCAGGGAGGAGGCGGACGACGCGAGCAGATGCCTCCTCGTCGGGGGCAAGACGAAGCGGCAGGAGGTGGAACAGGTGGTGGTGGGTGGTGGTGGGGGCGGGGGCGCGCCGGCGGCCGAGCTCGCCGGCGTCACGGGCGGTTGCATGGGAAGAGACGAC] consensusID : consensus_4381#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CCCCCACACCGAGCCGCGCATTTGCGTTGCATGGACTGCGTTCACGTTTCTGGCGTCGTGAGGGGGTCGCGGGACGGGCGTTGCGCCCGTANTCTGTGTGAGGTGTGGGCGGGGCTGGTGGCGTTGGCATCGGTGACTCGCGCGGTGGTGGATGGTGGGGCCGTGGGTGTGTTTGTGGGGGTTCTTTCTTTCATGAGGTGGTCGCCGGACAGCGACAGGTCCCCGTACTCCGTCGCCGCCGCCGTGACCGACGCCAGCGCCGCCGGGAACTCGCCGCGCGCCTGCAGGTCGCGCCCCAGGTCCAGCAGCCGCCCCGCCTCCCCGACGCGCCGCGACACCGACGCGCTCGCCGCGCGCTCCGCCGCTGTCACCGGGTCGTAGCTGGTGACGGCGTCGTCGTCCTCGCTGCTCGCCGCGCGGGGCGCCGCGGCGGCGGCGGCGGCGGCGAGGAGCAGGGAGGAGGCGGACGACGCGAGCAGATGCCTCCTCGTCGGGGGCAAGACGAAGCGGCAGGAGGTGGAACAGGTGGTGGTGGGTGGTGGTGGGGGCGGGGGCGCGCCGGCGGCCGAGCTCGCCGGCGTCACGGGCGGTTGCATGGGA] [-] EMBL CA753892 [CCCCCACACCGAGCCGCGCATTTGCGTTGCATGGACTGCGTTCACGTTTCTGGCGTCGTGAGGGGGTCGCGGGACGGGCGTTGCGCCCGTANTCTGTGTGAGGTGTGGGCGGGGCTGGTGGCGTTGGCATCGGTGACTCGCGCGGTGGTGGATGGTGGGGCCGTGGGTGTGTTTGTGGGGGTTCTTTCTTTCATGAGGTGGTCGCCGGACAGCGACAGGTCCCCGTACTCCGTCGCCGCCGCCGTGACCGACGCCAGCGCCGCCGGGAACTCGCCGCGCGCCTGCAGGTCGCGCCCCAGGTCCAGCAGCCGCCCCGCCTCCCCGACGCGCCGCGACACCGACGCGCTCGCCGCGCGCTCCGCCGCTGTCACCGGGTCGTAGCTGGTGACGGCGTCGTCGTCCTCGCTGCTCGCCGCGCGGGGCGCCGCGGCGGCGGCGGCGGCGGCGAGGAGCAGGGAGGAGGCGGACGACGCGAGCAGATGCCTCCTCGTCGGGGGCAAGACGAAGCGGCAGGAGGTGGAACAGGTGGTGGTGGGTGGTGGTGGGGGCGGGGGCGCGCCGGCGGCCGAGCTCGCCGGCGTCACGGGCGGTTGCATGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4381#0 TTCTTTTTTTTAGACATGAACAATTTCACTTTCACCATGTGTGTATAGATACAGAATTAG 60 consensus_4381#1 ------------------------------------------------------------ consensus_4381#0 ATGGACCCCAAAACCATCAACCATACGAGATTACGAGTCCATCGAATTGTGGTGTGGATT 120 consensus_4381#1 ------------------------------------------------------------ consensus_4381#0 ATGAACAGTTAGCTTGATTAATCAAGCAATCAAGCTAGATCATGAGAGCCCATTATACAT 180 consensus_4381#1 ------------------------------------------------------------ consensus_4381#0 TCACAAAGTTATAACCAAACACCAAAACTCTTTGATTCTCCTCTCTAGTAATTCATTTCC 240 consensus_4381#1 ------------------------------------------------------------ consensus_4381#0 TGCCCATTATACATACCCACTATCCAATGTTCAAAAATCGTTCAGACATGAACAATTTCA 300 consensus_4381#1 ------------------------------------------------------------ consensus_4381#0 CGTATAGATACATAATTTAGATGAACCCCAAAACCATACGATAAGAGTCCATCAAATTGT 360 consensus_4381#1 ------------------------------------------------------------ consensus_4381#0 GGTGTGGATTACGAACAGCTATAGCTTGATTAATTAATCAAATCAAAGCTCAATTGATCA 420 consensus_4381#1 ------------------------------------------------------------ consensus_4381#0 AGCAATGATCAGGAGAGGGTGATGAAGTGGCGGAGCGAGTCGACGAGGCTGGGGGGCCAG 480 consensus_4381#1 ------------------------------------------------------------ consensus_4381#0 TGCTTGGTGTCCCTGACGTAGGCGAGGTCGGTGTAGTGCGGGTCCAGCAGCGTGGCGATG 540 consensus_4381#1 -----------------------------CCCCCACACCGAGCCGCGCA--TTTGCGTTG 29 * ** * * *** * *** ** consensus_4381#0 -GCGAACTGGTTCTCGGCGAGCAGCGCCGCGTGCTTGTCGGCGTA-GAGCGCCGCCGCCA 598 consensus_4381#1 CATGGACTGCGTTCACGTTTCTGGCGTCGTGAGGGGGTCGCGGGACGGGCGTTGC-GCCC 88 * **** * * *** ** * * **** * * * *** ** *** consensus_4381#0 GCGCCGCGTG-GATCTCCGGGTAACCCCGCAGCGCCACCGACGCGTCCTCCATCTCCGCG 657 consensus_4381#1 GTANTCTGTGTGAGGTGTGGGCGGGGCTG--GTGGCGTTG--GCATCGGTGACTCGCGCG 144 * *** ** * *** * * * * * * ** ** * **** consensus_4381#0 ATGGCGT-CGTCGCGGTCGCCCACCTCGTACAGCACCAGCGCCCGCCCCACGCGGGCGTA 716 consensus_4381#1 GTGGTGGATGGTGGGGCCGTGGGTGT-GTTTGTGGGGGTTCTTTCTTTCATGAGGTGGTC 203 *** * * * ** ** * ** ** * ** ** consensus_4381#0 CCCCGACAGCGACAGGTCCCCGTACTCCGTCGCCACCGCCGTGAACGACGCCAGCGCCGC 776 consensus_4381#1 GCCGGACAGCGACAGGTCCCCGTACTCCGTCGCCGCCGCCGTGACCGACGCCAGCGCCGC 263 ** ****************************** ********* *************** consensus_4381#0 CGGGAACTCGCCGCGCGCCTGCAGGTCGCGCCCCAGGTCCAGCAGCCGCACCGCCTACCC 836 consensus_4381#1 CGGGAACTCGCCGCGCGCCTGCAGGTCGCGCCCCAGGTCCAGCAGCCGCCCCGCCTCCCC 323 ************************************************* ****** *** consensus_4381#0 GACGCGCCGCGACACCGACGCGCTCGCCGCGCGCTCCGCCGCTGTCACCGGGTCGTAGCT 896 consensus_4381#1 GACGCGCCGCGACACCGACGCGCTCGCCGCGCGCTCCGCCGCTGTCACCGGGTCGTAGCT 383 ************************************************************ consensus_4381#0 GGTGACGGCGTCGTCGTCCTCGCTGCTCGCCGCGCGGGGCGCCGCGGCGGCGGCGGCGGC 956 consensus_4381#1 GGTGACGGCGTCGTCGTCCTCGCTGCTCGCCGCGCGGGGCGCCGCGGCGGCGGCGGCGGC 443 ************************************************************ consensus_4381#0 GGCGAGGAGCAGGGAGGAGGCGGACGACGCGAGCAGATGCCTCCTCGTCGGGGGCAAGAC 1016 consensus_4381#1 GGCGAGGAGCAGGGAGGAGGCGGACGACGCGAGCAGATGCCTCCTCGTCGGGGGCAAGAC 503 ************************************************************ consensus_4381#0 GAAGCGGCAGGAGGTGGAACAGGTGGTGGTGGGTGGTGGTGGGGGCGGGGGCGCGCCGGC 1076 consensus_4381#1 GAAGCGGCAGGAGGTGGAACAGGTGGTGGTGGGTGGTGGTGGGGGCGGGGGCGCGCCGGC 563 ************************************************************ consensus_4381#0 GGCCGAGCTCGCCGGCGTCACGGGCGGTTGCATGGGAAGAGACGAC 1122 consensus_4381#1 GGCCGAGCTCGCCGGCGTCACGGGCGGTTGCATGGGA--------- 600 ************************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||