These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence [GTACACAAGAACTTCTCCATTGCAATAATCAATCGAGTTAATTAATTAGTTAGCACTAGCAAACATTGGCTAAAGTATTATATATCTATGGTTTTCCAAGTGCAGCCGCCATGGCTGCTCTTCCTCCACTTCATCGCCATCGCCGTCCTCCTCCCGGCCGTGGATAGTTTGCCGCCGCCGCCGCCGGCGGCGGCGGCGGCGGTGGCGACGGTGTTCGACGACAACTACGTGGCCACATACGGTGGAGACGGCTACCACCTGGTCAACCAGGGCGCGCAGATTAGCCTCACCCTGGACAAGAGCTCTGGTGCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGTTCTTCCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTAACAGCCTACTATCTAGCGTCAGAGCCAGACAGGGACGTGCAGGACGAGGTGGACTTTGAGTTCCTGGGCGACAAGGACGGCGAACCCATCACCCTCCAGACCAACGTCTTCATCGGCGGCCATGGCGACCGTGAGCAGCGCCTNCGCCTCTGGTTCGACCCTGCCGNCGATTTNCATGACTACTCCATNCTATGGAATCCCCCTNCACCTTGTGTAAGCTCAGCTTCGAGCTCATTTCAATGNCATCGGGGATGACTACGAATATATACCTTTTTTATATATAATAGAAAATANTACATCTTTTGATCNTTGGTANTAACACG] [+] EMBL CB096957 [GTACACAAGAACTTCTCCATTGCAATAATCAATCGAGTTAATTAATTAGTTAGCACTAGCAAACATTGGCTAAAGTATTATATATCTATGGTTTTCCAAGTGCAGCCGCCATGGCTGCTCTTCCTCCACTTCATCGCCATCGCCGTCCTCCTCCCGGCCGTGGATAGTTTGCCGCCGCCGCCGCCGGCGGCGGCGGCGGCGGTGGCGACGGTGTTCGACGACAACTACGTGGCCACATACGGTGGAGACGGCTACCACCTGGTCAACCAGGGCGCGCAGATTAGCCTCACCCTGGACAAGAGCTCTGGTGCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGTTCTTCCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTAACAGCCTACTATCTAGCGTCAGAGCCAGACAGGGACGTGCAGGACGAGGTGGACTTTGAGTTCCTGGGCGACAAGGACGGCGAACCCATCACCCTCCAGACCAACGTCTTCATCGGCGGCCATGGCGACCGTGAGCAGCGCCTNCGCCTCTGGTTCGACCCTGCCGNCGATTTNCATGACTACTCCATNCTATGGAATCCCCCTNCACCTTGTGTAAGCTCAGCTTCGAGCTCATTTCAATGNCATCGGGGATGACTACGAATATATACCTTTTTTATATATAATAGAAAATANTACATCTTTTGATCNTTGGTANTAACACG] consensusID : consensus_4408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [AACGTCTTCGTCGGCGGCCACGGCGACCGCGAGCAGCGCCTCCGCCTCTGGTTCGACCCCGCTGCCGACTTCCATGACTACTCCATCCTCTGGAACCCCTTCCACCTCGTGTAAGCTCAGTTCAATGTCACCATGACGGCCGTATACACTTTTGTTTTAAAACAAATAGTAGAAATAGTTACATCTTCCGTCTCTACCAACAAACACTTGCACATACAATAAGCGATGGGATAAATCCAGTGTTTTAAATAGCGGGCTATAACATTTAGCAGTTGACCCTTCTCAAGCAGCTCTAGACGGAGATTTAAAACCTGGATAAATCTAACTCCTACAAAATGACCACCTGAATTCTGTAGAAGCTAAGACAAATCACATGTACAAGCCATCGATTTGATTAATTATTTGGCAGGATATTCGTGGACGAGACGCCGGTGAGGGTGCTGAAGAACCTGACGAGCCGGGGCCCGGAGTTCGAGTTCCCGG] [+] EMBL AU164201 [AACGTCTTCGTCGGCGGCCACGGCGACCGCGAGCAGCGCCTCCGCCTCTGGTTCGACCCCGCTGCCGACTTCCATGACTACTCCATCCTCTGGAACCCCTTCCACCTCGTGTAAGCTCAGTTCAATGTCACCATGACGGCCGTATACACTTTTGTTTTAAAACAAATAGTAGAAATAGTTACATCTTCCGTCTCTACCAACAAACACTTGCACATACAATAAGCGATGGGATAAATCCAGTGTTTTAAATAGCGGGCTATAACATTTAGCAGTTGACCCTTCTCAAGCAGCTCTAGACGGAGATTTAAAACCTGGATAAATCTAACTCCTACAAAATGACCACCTGAATTCTGTAGAAGCTAAGACAAATCACATGTACAAGCCATCGATTTGATTAATTATTTGGCAGGATATTCGTGGACGAGACGCCGGTGAGGGTGCTGAAGAACCTGACGAGCCGGGGCCCGGAGTTCGAGTTCCCGG] consensusID : consensus_4408#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [GTCCTCCTCCTGGCCGTGGATAGTGTGCCGCCGGCGCCGGCGCCGCCGCCGNGNTGNGCGACGGTGTTCGACGACAACTACGTGGCAACATATGGTGGAGACGGCTACCACCTGGTCANCCAGGGCACGCAGATTAGCCTCACCCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGTTCTTCCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTGACAGCCTACTATCTGGCGTCAGAGCCAGACTTGGGACGTGCAGGACGAGGTGGACTTCGAGTTCCTTGGGCGACAAGGATTGGCAACCCCATCANCCTTCAAACCAACGTCTTCGTCGGCGGCCACGGCGACCGCGAAGCAGCGCTTCCGCTTTNGTTTGGACCCCGTTGCCGATTTN] [+] EMBL AU064316 [GTCCTCCTCCTGGCCGTGGATAGTGTGCCGCCGGCGCCGGCGCCGCCGCCGNGNTGNGCGACGGTGTTCGACGACAACTACGTGGCAACATATGGTGGAGACGGCTACCACCTGGTCANCCAGGGCACGCAGATTAGCCTCACCCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGTTCTTCCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTGACAGCCTACTATCTGGCGTCAGAGCCAGACTTGGGACGTGCAGGACGAGGTGGACTTCGAGTTCCTTGGGCGACAAGGATTGGCAACCCCATCANCCTTCAAACCAACGTCTTCGTCGGCGGCCACGGCGACCGCGAAGCAGCGCTTCCGCTTTNGTTTGGACCCCGTTGCCGATTTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4408#0 GTACACAAGAACTTCTCCATTGCAATAATCAATCGAGTTAATTAATTAGTTAGCACTAGC 60 consensus_4408#2 ------------------------------------------------------------ consensus_4408#1 ------------------------------------------------------------ consensus_4408#0 AAACATTGGCTAAAGTATTATATATCTATGGTTTTCCAAGTGCAGCCGCCATGGCTGCTC 120 consensus_4408#2 ------------------------------------------------------------ consensus_4408#1 -----------------------------------------------------AACGTCT 7 consensus_4408#0 TTCCTCCACTTCATCGCCATCGCCGTCCTCCTCCCGGCCGTGGATAGTTTGCCGCCGCCG 180 consensus_4408#2 ------------------------GTCCTCCTCCTGGCCGTGGATAGTGTGCCGCCGGCG 36 consensus_4408#1 TCGTCGGCGGCCACGGCGACCGCGAGCAGCGCCTCCGCCTCTGGTTCGACCCCGCTGCCG 67 * * * *** * * **** * ** consensus_4408#0 CCGCCGGCGGCGGCGGCGGCGGTGGCGACGGTGTTCGACGACAACTACGT--GGCCACAT 238 consensus_4408#2 C---CGGCGCCGCCGCCGNGNTGNGCGACGGTGTTCGACGACAACTACGT--GGCAACAT 91 consensus_4408#1 ACTTCCATGACTACTCCATCCTCTGGAACC-CCTTCCACCTCGTGTAAGCTCAGTTCAAT 126 * * * * * * ** *** ** * ** * * ** consensus_4408#0 ACGGTGGAGACGGC--TACCACCTGGTCAACCAGGGCGCGCAG----ATTAGCCTCACCC 292 consensus_4408#2 ATGGTGGAGACGGC--TACCACCTGGTCANCCAGGGCACGCAG----ATTAGCCTCACCC 145 consensus_4408#1 GTCACCATGACGGCCGTATACACTTTTGTTTTAAAACAAATAGTAGAAATAGTTACATCT 186 ****** ** ** * * * ** * *** ** * consensus_4408#0 TG-GACAAGAGCTCTGGTGCTGGATTCAGGTCCAAGTTGATGT-ACGGCTCAGGGTTCTT 350 consensus_4408#2 TG-G-------------------ATTCAGGTCCAAGTTGATGT-ACGGCTCAGGGTTCTT 184 consensus_4408#1 TCCGTCTCTACCAACAAACACTTGCACATACAATAAGCGATGGGATAAATCCAGTGTTTT 246 * * ** * **** * ** * * ** consensus_4408#0 CCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTAACAGCCTACTATCT 410 consensus_4408#2 CCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTGACAGCCTACTATCT 244 consensus_4408#1 AAATAGCGGGCTATAACATTTAGCAGTTGACCCTTCTCAAGCAGCTCTAGACGGAGATTT 306 * * ** * * * ** * ** ** * * * ** * ** * consensus_4408#0 AGCGTCAGAGCCAGACA-GGGACGTGCAGGACGAGG---TGGACTTTG-AGTTCCT-GGG 464 consensus_4408#2 GGCGTCAGAGCCAGACTTGGGACGTGCAGGACGAGG---TGGACTTCG-AGTTCCTTGGG 300 consensus_4408#1 AAAACCTGGATAAATCT-AACTCCTACAAAATGACCACCTGAATTCTGTAGAAGCTAAGA 365 * * * * * * ** * ** ** * * * ** ** * consensus_4408#0 CGACAAGGAC-GGCGAACCCATCACCCTCCAGAC-------CAACGTCTTCATCGGCGGC 516 consensus_4408#2 CGACAAGGATTGGCAACCCCATCANCCTTCAAAC-------CAACGTCTTCGTCGGCGGC 353 consensus_4408#1 CAAATCACATGTACAAGCCATCGATTTGATTAATTATTTGGCAGGATATTCGTGGACGAG 425 * * * * * ** * * ** * *** * * ** consensus_4408#0 CATGGCGACCGTGA-GCAGCGCCTNCGCCTCTGGTTCGACCCTGCCGNCGATTTNCATGA 575 consensus_4408#2 CACGGCGACCGCGAAGCAGCGCTTCCGCTTTNGTTTGGACCCCGTTGCCGATTTN----- 408 consensus_4408#1 -ACGCCGGTGAGGGTGCTGAAGAACCTGACGAGCCGGGGCCCGGAGTTCGAGTTCCCGG- 483 * * ** * ** * * * * *** * *** ** consensus_4408#0 CTACTCCATNCTATGGAATCCCCCTNCACCTTGTGTAAGCTCAGCTTCGAGCTCATTTCA 635 consensus_4408#2 ------------------------------------------------------------ consensus_4408#1 ------------------------------------------------------------ consensus_4408#0 ATGNCATCGGGGATGACTACGAATATATACCTTTTTTATATATAATAGAAAATANTACAT 695 consensus_4408#2 ------------------------------------------------------------ consensus_4408#1 ------------------------------------------------------------ consensus_4408#0 CTTTTGATCNTTGGTANTAACACG 719 consensus_4408#2 ------------------------ consensus_4408#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||