These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence [CTATCGGTTTAAATCGAACTAATTAAACATGAGCTCCACGTAATAGGTCAAGTCCAAGACTAAACAAGTAACAATGTCAGATTTAGGTTCCACAAGCTCGCGTGAAGGTAGAACTCTAATCTTCGCGTGTCTGCTCTATATCGTATCGCTAAGTTTGCAAATGATGACTTGTCAGTTCACGCTTACATGACTCTCTCTGGTGAAAAGCAAACGAATTGACTCGTGATAACTCGGTGATAATGGAAAGTGCAGAAGCTTGATCGTAGATGGAAGCTTGCACACATACGCGTGGCTATGTATAGACTGTCTCTAAGACGATTGCTGGAACGTGTGCACGTGGGTTATAGAGTATATAACAGCTATTACATGGTTACGTCATGTCGAAGCGTACCGGTGGGAAATTAATACCCAAAACGACCAGCGACGCTGGTGGCACAAATCAGGCCCCTTCGTGGCTCTGTGCTCGTCTCCGAGAATTGAATATTGGGACGCAATTTGAGGATGTCAACACGCAATCGCCATCCAGACATGTACTCAAACGAAATAAGGTGGTTCGCTCGTGGGTCGTTCGTTGTATAAAAAATTCGGAATATTTCCGACATACACGTCTTATCTGGAAAACCAAATTCCTTTGGTTTCCGAATTGAAGAAAGGAACATGGTTTTGTGGTTACCTGGTGTGTTTCATTTATTGCTTCCGATTTTTAATACGATTAAAAGCAAAGA] [+] EMBL CA755456 [CTATCGGTTTAAATCGAACTAATTAAACATGAGCTCCACGTAATAGGTCAAGTCCAAGACTAAACAAGTAACAATGTCAGATTTAGGTTCCACAAGCTCGCGTGAAGGTAGAACTCTAATCTTCGCGTGTCTGCTCTATATCGTATCGCTAAGTTTGCAAATGATGACTTGTCAGTTCACGCTTACATGACTCTCTCTGGTGAAAAGCAAACGAATTGACTCGTGATAACTCGGTGATAATGGAAAGTGCAGAAGCTTGATCGTAGATGGAAGCTTGCACACATACGCGTGGCTATGTATAGACTGTCTCTAAGACGATTGCTGGAACGTGTGCACGTGGGTTATAGAGTATATAACAGCTATTACATGGTTACGTCATGTCGAAGCGTACCGGTGGGAAATTAATACCCAAAACGACCAGCGACGCTGGTGGCACAAATCAGGCCCCTTCGTGGCTCTGTGCTCGTCTCCGAGAATTGAATATTGGGACGCAATTTGAGGATGTCAACACGCAATCGCCATCCAGACATGTACTCAAACGAAATAAGGTGGTTCGCTCGTGGGTCGTTCGTTGTATAAAAAATTCGGAATATTTCCGACATACACGTCTTATCTGGAAAACCAAATTCCTTTGGTTTCCGAATTGAAGAAAGGAACATGGTTTTGTGGTTACCTGGTGTGTTTCATTTATTGCTTCCGATTTTTAATACGATTAAAAGCAAAGA] consensusID : consensus_442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [TATCGGTTTAAATCGAACTAATTAAACATGGGTCCACGTAAAGGTCAAGTCCAAGCTAAACAAGAACAAGTCAGTTTAGGTCCACAACTCGCTGAAGGTGAACTTAACTTCGGTGTTGCTCATATCTATGCTAGTTTCAATGATACTTTCGTTCACGTTACTGATCTCTCGGGAAAAGAAACAATTGCTCGTGTAACTGGTGGAATGAAAGTCAAAGCTGATCGTGATGAAGCTTCACCATACGCTGCTATGTTAGCTGCTCAAGACGTTGCTGAACGTTGCCGTGGTTTAGGTATTACAGCTTTACATGTTCGTCTTCGAGCTACCGGTGGAAATAAAACCAAAACACCAGGACCTGGTGCACAATCAGCCCTTCGTGCTCTTGCTCGTTCCGGAATTAAAATTGGACGAATTGAGGATGTCACACCAATCCCATCAGACAGTACTCGACGAANAGGTGGTCGTCGTGGTCGTCGTTTATAANAATTCGAATATTTCTACATACACGTCTATCTGGAAACGAAATTCTTTGTTTCCAATTGAAGAAAGACATGTTTTTTGTTTACGTGTGTGTTTCATTATTGTTTCGATTTTTAATACGATNAAAACNA] [+] EMBL CA758760 [TATCGGTTTAAATCGAACTAATTAAACATGGGTCCACGTAAAGGTCAAGTCCAAGCTAAACAAGAACAAGTCAGTTTAGGTCCACAACTCGCTGAAGGTGAACTTAACTTCGGTGTTGCTCATATCTATGCTAGTTTCAATGATACTTTCGTTCACGTTACTGATCTCTCGGGAAAAGAAACAATTGCTCGTGTAACTGGTGGAATGAAAGTCAAAGCTGATCGTGATGAAGCTTCACCATACGCTGCTATGTTAGCTGCTCAAGACGTTGCTGAACGTTGCCGTGGTTTAGGTATTACAGCTTTACATGTTCGTCTTCGAGCTACCGGTGGAAATAAAACCAAAACACCAGGACCTGGTGCACAATCAGCCCTTCGTGCTCTTGCTCGTTCCGGAATTAAAATTGGACGAATTGAGGATGTCACACCAATCCCATCAGACAGTACTCGACGAANAGGTGGTCGTCGTGGTCGTCGTTTATAANAATTCGAATATTTCTACATACACGTCTATCTGGAAACGAAATTCTTTGTTTCCAATTGAAGAAAGACATGTTTTTTGTTTACGTGTGTGTTTCATTATTGTTTCGATTTTTAATACGATNAAAACNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_442#0 CTATCGGTTTAAATCGAACTAATTAAACATGAGCTCCACGTAATAGGTCAAGTCCAAGAC 60 consensus_442#1 -TATCGGTTTAAATCGAACTAATTAAACATGGG-TCCACGTAA-AGGTCAAGTCCAAG-C 56 ****************************** * ********* ************** * consensus_442#0 TAAACAAGTAACAATGTCAGATTTAGGTTCCACAAGCTCGCGTGAAGGTAGAACTCTAAT 120 consensus_442#1 TAAACAAG-AACAA-GTCAG-TTTAGGT-CCACAA-CTCGC-TGAAGGTGAA---CTTAA 107 ******** ***** ***** ******* ****** ***** ******* * ** * consensus_442#0 CTTCGCGTGTCTGCTCTATATCGTATCGCTAAGTTTGCAAATGATGACTTGTCAGTTCAC 180 consensus_442#1 CTTCG-GTGT-TGCTC-ATATC-TAT-GCTAGTTTC---AATGATACTTTC---GTTCAC 156 ***** **** ***** ***** *** **** ** ****** ** ****** consensus_442#0 GCTTACATGACTCTCTCTGGTGAAAAGCAAACGAATTGACTCGTGATAACTCGGTGATAA 240 consensus_442#1 G-TTAC-TGA---TCTCTCGGGAAAAG-AAAC-AATTG-CTCGTG-TAACT-GGTGG-AA 205 * **** *** ***** * ****** **** ***** ****** ***** **** ** consensus_442#0 TGGAAAGTGCAGAAGCTTGATCGTAGATGGAAGCTTGCACACATACGCGTGGCTATGTAT 300 consensus_442#1 TGAAA---GTCAAAGCT-GATCGT-GATG-AAGCTT-CAC-CATACGC--TGCTATGT-T 254 ** ** * ***** ****** **** ****** *** ******* ******* * consensus_442#0 AGACTGTCTCTAAGACGATTGCTGGAACGTGTGCACGTGGGTTATAGAGTATATAACAGC 360 consensus_442#1 AG-CTGCT--CAAGACG-TTGCTG-AACGT-TGC-CGTGGTTTAG-----GTATTACAGC 302 ** *** ****** ****** ***** *** ***** *** *** ***** consensus_442#0 TATTACATGGTTACGTCATGTCGAAGCGTACCGGTGGGAAATTAATACCCAAAACGACCA 420 consensus_442#1 T-TTACATGTT-----CGTCTTCGAGC-TACCGGTGGAAA--TAAAACC-AAAAC-ACCA 351 * ******* * * * * *** ********* ** *** *** ***** **** consensus_442#0 GCGACGCTGGTGGCACAAATCAGGCCCCTTCGTGGCTCTGTGCTCGTCTCCGAGAATTGA 480 consensus_442#1 G-GAC-CTGGTG-CACAA-TCAG--CCCTTCGTG-CTCT-TGCTCGTTCC--GGAATTAA 401 * *** ****** ***** **** ********* **** ******* * ***** * consensus_442#0 ATATTGGGACGCAATTTGAGGATGTCAACACGCAATCGCCATCCAGACATGTACTCAAAC 540 consensus_442#1 A-ATTGGA---CGAATTGAGGATGTCA-CAC-CAATC-CCATC-AGACA-GTACTCGA-C 451 * ***** * * ************ *** ***** ***** ***** ****** * * consensus_442#0 GAAATAAGGTGGTTCGCTCGTGGGTCGTTCGTTGTATAAAAAATTCGGAATATTTCCGAC 600 consensus_442#1 GAA--NAGGTGGTCG--TCGTGG-----TCGTCGTTTATAANAATTCGAATATTTCT-AC 501 *** ******* ****** **** ** ** ** * * ********* ** consensus_442#0 ATACACGTCTTATCTGGAAAACCAAATTCCTTTGGTTTCCGAATTGAAGAAAGGAACATG 660 consensus_442#1 ATACACGTCT-ATCTGGAAA-CGAAATTCTTT--GTTTCC-AATTGAAGAAAG--ACATG 554 ********** ********* * ****** ** ****** ************ ***** consensus_442#0 GTTTTGTGGTTACCTGGTGTGTTTCATTTATTGCTTCCGATTTTTAATACGATTAAAAGC 720 consensus_442#1 -TTTTTTGTTTACGTG-TGTGTTTCATT-ATTGTTTC-GATTTTTAATACGATNAAAACN 610 **** ** **** ** *********** **** *** *************** **** consensus_442#0 AAAGA 725 consensus_442#1 A---- 611 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||