These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_447#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1052 fasta sequence [GCTCCAGGCAGGACGGCGGCACTGCCCGACGGGTGGGGAGGAAGGCGGCGTCGGCAGCGGCAGCTTCCTCTCCGTGCTCGCCGACGAGGAGGAGCAAGGTGGTGGCGGCGCCGGGGGGGGGGGGGAGCAAGGCGGTGGCGTCAGCCTCCTCTCCGTGCTCGCTGACAAGGAGGAGCGGTGGGCGACCCAGCGTCGCGGCGATGCCGCCGCCGCCGACGGCGGTCCTCCTGGACAACGTCCTCGCCACCTCGCTGACGGAGATCTGGATCAAGACCGGGATGGCGACGAGCACCCTCACCAAGCACCTGCGAGGCTTACCGTTCTTGCTCGCCCGCCGCCGTCCTCGCCGTGTCGTTTCCCCAACCGCCGCGCCGCTTCGCTGTCTTCACCGTGCCGCTCCTTTCCTTCCATTTCATCTCCACCAGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGTGTCATGGCGTTGGGTGCGTCGTACGCCCGGGACACGCCGGAGCACGCCGCGCCGCCGCCAGTGGTGGAGGCCGACGCGGAGCAGCGGATGACGACGTGGACTCAGCTGTCGTGCCCCACCTCGGCGTCGGGCTGCAGCGCCTCCCTCCAGCGGAACGTGGCGATGCTGGCGTCGACGTCCGGCGGGGACTGCTCGGAGATGATGGTCGTCACCTGCCCGCTCCGCCGACCCACCTGCTCCTGCGTGGTCACCACCGCCGCTGCATCGCCGGTCGCCGGCCACCGCCGCCGATCCTCCTCTCCCGCCTCGCCCCGTCGACTTCCTCCCCAACACGCTGGCCAGCCTGCCCAGGAGAAAATGGAGAGAAGAGGAAGGGACAGATGACGTGGCATCCTGACATGTGGGGCCCATGTGGGTCCCACGCTGACTCGGCCACCACGCCAAACAAAACCGGGGTCAAAACCACGAGGGACCTAAAGCGAACGGTTTTGATATTTAAGGGACGCCCGGTATCTATTGGGTTGACGATTTTGTATCTCGATGACAATTTGAGGGACCCTGGGTGTACTTTTTTCTTTATTCTCCGA] [+] EMBL AK109945 [GCTCCAGGCAGGACGGCGGCACTGCCCGACGGGTGGGGAGGAAGGCGGCGTCGGCAGCGGCAGCTTCCTCTCCGTGCTCGCCGACGAGGAGGAGCAAGGTGGTGGCGGCGCCGGGGGGGGGGGGGAGCAAGGCGGTGGCGTCAGCCTCCTCTCCGTGCTCGCTGACAAGGAGGAGCGGTGGGCGACCCAGCGTCGCGGCGATGCCGCCGCCGCCGACGGCGGTCCTCCTGGACAACGTCCTCGCCACCTCGCTGACGGAGATCTGGATCAAGACCGGGATGGCGACGAGCACCCTCACCAAGCACCTGCGAGGCTTACCGTTCTTGCTCGCCCGCCGCCGTCCTCGCCGTGTCGTTTCCCCAACCGCCGCGCCGCTTCGCTGTCTTCACCGTGCCGCTCCTTTCCTTCCATTTCATCTCCACCAGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGTGTCATGGCGTTGGGTGCGTCGTACGCCCGGGACACGCCGGAGCACGCCGCGCCGCCGCCAGTGGTGGAGGCCGACGCGGAGCAGCGGATGACGACGTGGACTCAGCTGTCGTGCCCCACCTCGGCGTCGGGCTGCAGCGCCTCCCTCCAGCGGAACGTGGCGATGCTGGCGTCGACGTCCGGCGGGGACTGCTCGGAGATGATGGTCGTCACCTGCCCGCTCCGCCGACCCACCTGCTCCTGCGTGGTCACCACCGCCGCTGCATCGCCGGTCGCCGGCCACCGCCGCCGATCCTCCTCTCCCGCCTCGCCCCGTCGACTTCCTCCCCAACACGCTGGCCAGCCTGCCCAGGAGAAAATGGAGAGAAGAGGAAGGGACAGATGACGTGGCATCCTGACATGTGGGGCCCATGTGGGTCCCACGCTGACTCGGCCACCACGCCAAACAAAACCGGGGTCAAAACCACGAGGGACCTAAAGCGAACGGTTTTGATATTTAAGGGACGCCCGGTATCTATTGGGTTGACGATTTTGTATCTCGATGACAATTTGAGGGACCCTGGGTGTACTTTTTTCTTTATTCTCCGA] consensusID : consensus_447#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [GGAGATCTGGATCAAGACCGGGATGCCGACGAGCACCCTCACCAAGCACCTGCGAGGCCTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGTCGCGTCGTTTTCCCAACCGCCGCGCCGCTTCGCCATCTTCGCCGTCTTCGCCGTGCCGCTCCTCTCCTTCCACTTCATCTCCACCGGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGCGTCATGGCGTTGGACGCGCCGTACGCTCGGGACACGCCGGAGCGCGCCGCGCCGCCGCCCGTGGTGGAGGTTGACGCGGACAGCGGATGACGGCGTGGACTCGACCGTCGCGCCCCGCCTTCGGCGTCCGCCTGCAGCGCCTTCCCTNCCGTTGAGCGAGACGACGTCGGAGTCGACCCGGAACGTGGCGATGCTTGCGTCGANGTCCGGCGGGAACNGCTCGGAGATGATGGTCG] [+] EMBL AU071182 [GGAGATCTGGATCAAGACCGGGATGCCGACGAGCACCCTCACCAAGCACCTGCGAGGCCTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGTCGCGTCGTTTTCCCAACCGCCGCGCCGCTTCGCCATCTTCGCCGTCTTCGCCGTGCCGCTCCTCTCCTTCCACTTCATCTCCACCGGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGCGTCATGGCGTTGGACGCGCCGTACGCTCGGGACACGCCGGAGCGCGCCGCGCCGCCGCCCGTGGTGGAGGTTGACGCGGACAGCGGATGACGGCGTGGACTCGACCGTCGCGCCCCGCCTTCGGCGTCCGCCTGCAGCGCCTTCCCTNCCGTTGAGCGAGACGACGTCGGAGTCGACCCGGAACGTGGCGATGCTTGCGTCGANGTCCGGCGGGAACNGCTCGGAGATGATGGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_447#0 GCTCCAGGCAGGACGGCGGCACTGCCCGACGGGTGGGGAGGAAGGCGGCGTCGGCAGCGG 60 consensus_447#1 ------------------------------------------------------------ consensus_447#0 CAGCTTCCTCTCCGTGCTCGCCGACGAGGAGGAGCAAGGTGGTGGCGGCGCCGGGGGGGG 120 consensus_447#1 ------------------------------------------------------------ consensus_447#0 GGGGGAGCAAGGCGGTGGCGTCAGCCTCCTCTCCGTGCTCGCTGACAAGGAGGAGCGGTG 180 consensus_447#1 ------------------------------------------------------------ consensus_447#0 GGCGACCCAGCGTCGCGGCGATGCCGCCGCCGCCGACGGCGGTCCTCCTGGACAACGTCC 240 consensus_447#1 ------------------------------------------------------------ consensus_447#0 TCGCCACCTCGCTGACGGAGATCTGGATCAAGACCGGGATGGCGACGAGCACCCTCACCA 300 consensus_447#1 ----------------GGAGATCTGGATCAAGACCGGGATGCCGACGAGCACCCTCACCA 44 ************************* ****************** consensus_447#0 AGCACCTGCGAGGCTTACCGTTCTTGCTCGCCCGCCGCCGTCCTCGCCGTGTCGTTTCCC 360 consensus_447#1 AGCACCTGCGAGGCCTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGTCGCGTCGTTTTCC 104 ************** * *** ** *************** ****** ** ******* ** consensus_447#0 CAACCGCCGCGCCGCTTCGCT---------GTCTTCACCGTGCCGCTCCTTTCCTTCCAT 411 consensus_447#1 CAACCGCCGCGCCGCTTCGCCATCTTCGCCGTCTTCGCCGTGCCGCTCCTCTCCTTCCAC 164 ******************** ****** ************* ******** consensus_447#0 TTCATCTCCACCAGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGTGTCATG 471 consensus_447#1 TTCATCTCCACCGGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGCGTCATG 224 ************ **************************************** ****** consensus_447#0 GCGTTGGGTGCGTCGTACGCCCGGGACACGCCGGAGCACGCCGCGCCGCCGCCAGTGGTG 531 consensus_447#1 GCGTTGGACGCGCCGTACGCTCGGGACACGCCGGAGCGCGCCGCGCCGCCGCCCGTGGTG 284 ******* *** ******* **************** *************** ****** consensus_447#0 GAGGCCGACGCGGAGCAGCGGATGACGACGTGGACTCAGCTGTCGTGCCCCACCT-CGGC 590 consensus_447#1 GAGGTTGACGCGGA-CAGCGGATGACGGCGTGGACTCGACCGTCGCGCCCCGCCTTCGGC 343 **** ******** ************ ********* * **** ***** *** **** consensus_447#0 GTCGGGCTGCAGCGCCT-CCCTCCAGCGGAACGTGGCGATGCTGGCGTCGACGTCCGGCG 649 consensus_447#1 GTCCGCCTGCAGCGCCTTCCCTNCCGTTGAGCGAGACGACGTCGGAGTCGACCCGGAACG 403 *** * *********** **** * * ** ** * *** * ** ****** ** consensus_447#0 GGG-ACTGCTCGGAGATGATGGTCGTCACCTGCCCGCTCCGCCGACCCACCTGCTCCTGC 708 consensus_447#1 TGGCGATGCTTGC-GTCGANGTCCGGCGGGAACN-GCTCGGAGATGATGGTCG------- 454 ** **** * * ** * ** * * **** * * consensus_447#0 GTGGTCACCACCGCCGCTGCATCGCCGGTCGCCGGCCACCGCCGCCGATCCTCCTCTCCC 768 consensus_447#1 ------------------------------------------------------------ consensus_447#0 GCCTCGCCCCGTCGACTTCCTCCCCAACACGCTGGCCAGCCTGCCCAGGAGAAAATGGAG 828 consensus_447#1 ------------------------------------------------------------ consensus_447#0 AGAAGAGGAAGGGACAGATGACGTGGCATCCTGACATGTGGGGCCCATGTGGGTCCCACG 888 consensus_447#1 ------------------------------------------------------------ consensus_447#0 CTGACTCGGCCACCACGCCAAACAAAACCGGGGTCAAAACCACGAGGGACCTAAAGCGAA 948 consensus_447#1 ------------------------------------------------------------ consensus_447#0 CGGTTTTGATATTTAAGGGACGCCCGGTATCTATTGGGTTGACGATTTTGTATCTCGATG 1008 consensus_447#1 ------------------------------------------------------------ consensus_447#0 ACAATTTGAGGGACCCTGGGTGTACTTTTTTCTTTATTCTCCGA 1052 consensus_447#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||