These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4472#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1549 fasta sequence [TCTTTTTTTTAAGCCATAACAGGTCGTTCATAACCCCAACCCTTCTCTGTCAGTGAAAAACACACATTTGCAGGCCTTACAAGTGACAACCCAGAATATATACTACTCATTCTAAACACATTCCTGAAAACCACAGTTTTTGAGAGAGGGCAAAACATTACAGCAGCATCACGAAAGGGTACCCCCACAAGCATTCGTACAGACAAAAAAGCCTCGGACGCAAAAACATCAAGCTAGGCACTCCTCTTCAACTTCTTCCTCTTTCATCACCTTTGGTTCTACACATCAACTTCTTACTCCAAAGCGCCACGCCCATATCCTCATCTGAGCAACTTCTACCTGGAAACTTCCATCAGCTTACAGCTTGTTCTAATTCTTTATGGCCTTGTATACCAACACAAAGATCAAACAATGCTTCATCATCACGAAATAAGTGGTCATCCAAACCATCTTTTCGAAACTCTTGGAGATTCTTTTGTCTCAGCTTCATCATCATCATCTCAGAATATTGATTCCAGTTTCTCCTGGAGGTGATAGTCTTACAACATTTTTAGTTAAGTCATCTTCCCTCAGTTTGCCAATGCCACCGGTTACTATCTCACCTTGATTATTCTTGCGGGGACAGAATTTTTCACCCCAAGAATTCAAAAAATAGAAGAATACCCTCCCCCTTTTCATCCCAGCACCAATGAGGACAACAGCGTGTCCTATCTGTGCGTGCAATTGTTTTTCACCAGATTTTGATCGAGGGGACTTGTATATCTGGCAATAGCGGAGGAGACTTCTTCTTTTTCCAGGAATGTAGGTAGCAACCATCGGAATGCCCTCTGCTAAGTTCTGACAAATAGTCTCAAAGTCATCTCGTGGAATTGTGGATACATCTCTTGCAACATATCGGTTACCAGATTTCTCTTTAGTGATCCCTTCTGATCTGAGAATCAGCGCGGTATGAAGGACACGGTGTAGGCCGTAATCTCTTGTAAGGCAGTTGATAGAAAGCACCTCAGGAAACTTATCCTCAAACTTTTTGTGCAGCTCAAATGGATCAATGCATTGCACCAGATCTGGGTCCTTGCCTTCCGAAATGCTAAACACCCTTTCCATAATCTCTACCGCTTTTGAGTATGCGAAAGCAACACATAGGGATTGTTCGCCTTGATCGTGAACTTCACCTACAACCTTTTTTTCCTGTGCATTTATTTCCCCCAAGCAAAATTTAAAACTTCCGCAAAACTTTTTGCCGCAATCACTGTTGGTGCAGTGAAATGCTGGAAGCTTGAAGAATAGGTGTTTTGTGGGTCTATTGATTGTTCCGCATGCTCGGCACTTCCAGGCTTTAGCATCATTACAGCTTCGAAGTCCCCTTCGTTTCGCCATGGTTACAACAGAATTCGGGGGGAGGCGAGACGGAGATGGCAGCCGTGGAGGTCGGCAGTACGGCTCGGCGCGGCGGGCCTGCAGTAGAGGGCGGCGGCGGGGCCCGGATGCCAGAGGCTGGGTGGTGCGCCGACGAGTAAGCCTCGCCTCGCCTCGCCTCGCCCCGCGGCGG] [+] EMBL CB622661 [TCTTTTTTTTAAGCCATAACAGGTCGTTCATAACCCCAACCCTTCTCTGTCAGTGAAAAACACACATTTGCAGGCCTTACAAGTGACAACCCAGAATATATACTACTCATTCTAAACACATTCCTGAAAACCACAGTTTTTGAGAGAGGGCAAAACATTACAGCAGCATCACGAAAGGGTACCCCCACAAGCATTCGTACAGACAAAAAAGCCTCGGACGCAAAAACATCAAGCTAGGCACTCCTCTTCAACTTCTTCCTCTTTCATCACCTTTGGTTCTACACATCAACTTCTTACTCCAAAGCGCCACGCCCATATCCTCATCTGAGCAACTTCTACCTGGAAACTTCCATCAGCTTACAGCTTGTTCTAATTCTTTATGGCCTTGTATACCAACACAAAGATCAAACAATGCTTCATCATCACGAAATAAGTGGTCATCCAAACCATCTTTTCGAAACTCTTGGAGATTCTTTTGTCTCAGCTTCATCATCATCATCTCAGAATATTGATTCCAGTTTCTCCTGGAGGTGATAGTCTTACAACATTTTTAGTTAAGTCATCTTCCCTCAGTTTGCCAATGCCACCGGTTACTATCTCACCTTGATTATTCTTGCGGGGACAGAATTTTTCACCCCAAGAATTCAAAAAATAGAAGAATACCCTCCCCCTTTTCATCCCAGCACCAATGAGGACAACAGCGTGTCCTATCTGTGCGTGCAATTGTTTTTCACCAGATTTTGATCGAGGGGACTTGTATAT ] [-] EMBL CB622660 [ AATAGTTTTTCACCAGATTTTGATCGAGGGGACTTGTATATCTGGCAATAGCGGAGGAGACTTCTTCTTTTTCCAGGAATGTAGGTAGCAACCATCGGAATGCCCTCTGCTAAGTTCTGACAAATAGTCTCAAAGTCATCTCGTGGAATTGTGGATACATCTCTTGCAACATATCGGTTACCAGATTTCTCTTTAGTGATCCCTTCTGATCTGAGAATCAGCGCGGTATGAAGGACACGGTGTAGGCCGTAATCTCTTGTAAGGCAGTTGATAGAAAGCACCTCAGGAAACTTATCCTCAAACTTTTTGTGCAGCTCAAATGGATCAATGCATTGCACCAGATCTGGGTCCTTGCCTTCCGAAATGCTAAACACCCTTTCCATAATCTCTACCGCTTTTGAGTATGCGAAAGCAACACATAGGGATTGTTCGCCTTGATCGTGAACTTCACCTACAACCTTTTTTTCCTGTGCATTTATTTCCCCCAAGCAAAATTTAAAACTTCCGCAAAACTTTTTGCCGCAATCACTGTTGGTGCAGTGAAATGCTGGAAGCTTGAAGAATAGGTGTTTTGTGGGTCTATTGATTGTTCCGCATGCTCGGCACTTCCAGGCTTTAGCATCATTACAGCTTCGAAGTCCCCTTCGTTTCGCCATGGTTACAACAGAATTCGGGGGGAGGCGAGACGGAGATGGCAGCCGTGGAGGTCGGCAGTACGGCTCGGCGCGGCGGGCCTGCAGTAGAGGGCGGCGGCGGGGCCCGGATGCCAGAGGCTGGGTGGTGCGCCGACGAGTAAGCCTCGCCTCGCCTCGCCTCGCCCCGCGGCGG] consensusID : consensus_4472#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 830 fasta sequence [GGNATTAGAGAGCTCAGATTTGCTTTGAGATTGGTGATTANCACGTGTCGCCTAAGGCNCCTTCCAAGAGCCTGAAAACCACCAAAGGAAAATAAAGCTAAGCCATANCAGGTCGTTCATAACCCCAACCNTTCTCTGTCAGTGAAAANCACACATTTGCAGGCCTGACAAGTGACAACCCAGAATATATATACTACTCATTCTAAACACATTCCTGAAAACCACAGTTTTTGAGAGAGGGCAAAACATTACAGCAGCATCACGAAAGGGTACCCCCACAAGCATTCGTACAGACAAAAAAGCCTCGGACGCAAAACATCAAGCTAGGCACTCCTCTTCAACTTCTTCCTCTTTCACCACCTTTGGTTCTACACATCAACTTCTTACTCCAAAGCACCACGCCCATATCCTCATCTGAGCGACTTCTACCTGGAAACTTCCATCAGCTTATAGCTTGTTCTAATTCTTTATGGCCTTGTATACCAACACAAAGATCATCACGAAATAAGTGGTCATCCAAACCATCTTTTCGAAACTCTTGGAGATTCTTTTGTCTCAGCTTCATCATCATCATCTCAGAATATTGATTCCTCGTAGCCATCATTAACAGATAGTTAGGATCAGAAATCTCCAATTCAAACTGATCGTCTAACCTTCTTGTAACACCAGTTTCTCCTGGAGGTGATAGTCTTACAACATTTTTAGTTAAGTCATCCTCCCTCAGTTTGCCGATGCCACCGGTTACTATCTCACCTTGATTATTCTTGCGGGGACAGAATTTTTCACCCCAAGAATTCAAAAAATAGGAGAATACCCTCCCCCTTGTCTCG] [-] EMBL CA764312 [GGNATTAGAGAGCTCAGATTTGCTTTGAGATTGGTGATTANCACGTGTCGCCTAAGGCNCCTTCCAAGAGCCTGAAAACCACCAAAGGAAAATAAAGCTAAGCCATANCAGGTCGTTCATAACCCCAACCNTTCTCTGTCAGTGAAAANCACACATTTGCAGGCCTGACAAGTGACAACCCAGAATATATATACTACTCATTCTAAACACATTCCTGAAAACCACAGTTTTTGAGAGAGGGCAAAACATTACAGCAGCATCACGAAAGGGTACCCCCACAAGCATTCGTACAGACAAAAAAGCCTCGGACGCAAAACATCAAGCTAGGCACTCCTCTTCAACTTCTTCCTCTTTCACCACCTTTGGTTCTACACATCAACTTCTTACTCCAAAGCACCACGCCCATATCCTCATCTGAGCGACTTCTACCTGGAAACTTCCATCAGCTTATAGCTTGTTCTAATTCTTTATGGCCTTGTATACCAACACAAAGATCATCACGAAATAAGTGGTCATCCAAACCATCTTTTCGAAACTCTTGGAGATTCTTTTGTCTCAGCTTCATCATCATCATCTCAGAATATTGATTCCTCGTAGCCATCATTAACAGATAGTTAGGATCAGAAATCTCCAATTCAAACTGATCGTCTAACCTTCTTGTAACACCAGTTTCTCCTGGAGGTGATAGTCTTACAACATTTTTAGTTAAGTCATCCTCCCTCAGTTTGCCGATGCCACCGGTTACTATCTCACCTTGATTATTCTTGCGGGGACAGAATTTTTCACCCCAAGAATTCAAAAAATAGGAGAATACCCTCCCCCTTGTCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4472#0 ------------------------------------------------------------ consensus_4472#1 GGNATTAGAGAGCTCAGATTTGCTTTGAGATTGGTGATTANCACGTGTCGCCTAAGGCNC 60 consensus_4472#0 -----------------------------TCTTTTTTTTAAGCCATAACAGGTCGTTCAT 31 consensus_4472#1 CTTCCAAGAGCCTGAAAACCACCAAAGGAAAATAAAGCTAAGCCATANCAGGTCGTTCAT 120 * ********* ************ consensus_4472#0 AACCCCAACCCTTCTCTGTCAGTGAAAAACACACATTTGCAGGCCTTACAAGTGACAACC 91 consensus_4472#1 AACCCCAACCNTTCTCTGTCAGTGAAAANCACACATTTGCAGGCCTGACAAGTGACAACC 180 ********** ***************** ***************** ************* consensus_4472#0 CAGAATATATA--CTACTCATTCTAAACACATTCCTGAAAACCACAGTTTTTGAGAGAGG 149 consensus_4472#1 CAGAATATATATACTACTCATTCTAAACACATTCCTGAAAACCACAGTTTTTGAGAGAGG 240 *********** *********************************************** consensus_4472#0 GCAAAACATTACAGCAGCATCACGAAAGGGTACCCCCACAAGCATTCGTACAGACAAAAA 209 consensus_4472#1 GCAAAACATTACAGCAGCATCACGAAAGGGTACCCCCACAAGCATTCGTACAGACAAAAA 300 ************************************************************ consensus_4472#0 AGCCTCGGACGCAAAAACATCAAGCTAGGCACTCCTCTTCAACTTCTTCCTCTTTCATCA 269 consensus_4472#1 AGCCTCGGACGCAAAA-CATCAAGCTAGGCACTCCTCTTCAACTTCTTCCTCTTTCACCA 359 **************** **************************************** ** consensus_4472#0 CCTTTGGTTCTACACATCAACTTCTTACTCCAAAGCGCCACGCCCATATCCTCATCTGAG 329 consensus_4472#1 CCTTTGGTTCTACACATCAACTTCTTACTCCAAAGCACCACGCCCATATCCTCATCTGAG 419 ************************************ *********************** consensus_4472#0 CAACTTCTACCTGGAAACTTCCATCAGCTTACAGCTTGTTCTAATTCTTTATGGCCTTGT 389 consensus_4472#1 CGACTTCTACCTGGAAACTTCCATCAGCTTATAGCTTGTTCTAATTCTTTATGGCCTTGT 479 * ***************************** **************************** consensus_4472#0 ATACCAACACAAAGATCAAACAATGCTTCATCATCACGAAATAAGTGGTCATCCAAACCA 449 consensus_4472#1 ATACCAACACAAAGATCA---------------TCACGAAATAAGTGGTCATCCAAACCA 524 ****************** *************************** consensus_4472#0 TCTTTTCGAAACTCTTGGAGATTCTTTTGTCTCAGCTTCATCATCATCATCTCAGAATAT 509 consensus_4472#1 TCTTTTCGAAACTCTTGGAGATTCTTTTGTCTCAGCTTCATCATCATCATCTCAGAATAT 584 ************************************************************ consensus_4472#0 TGATTCC----------------------------------------------------- 516 consensus_4472#1 TGATTCCTCGTAGCCATCATTAACAGATAGTTAGGATCAGAAATCTCCAATTCAAACTGA 644 ******* consensus_4472#0 -----------------------AGTTTCTCCTGGAGGTGATAGTCTTACAACATTTTTA 553 consensus_4472#1 TCGTCTAACCTTCTTGTAACACCAGTTTCTCCTGGAGGTGATAGTCTTACAACATTTTTA 704 ************************************* consensus_4472#0 GTTAAGTCATCTTCCCTCAGTTTGCCAATGCCACCGGTTACTATCTCACCTTGATTATTC 613 consensus_4472#1 GTTAAGTCATCCTCCCTCAGTTTGCCGATGCCACCGGTTACTATCTCACCTTGATTATTC 764 *********** ************** ********************************* consensus_4472#0 TTGCGGGGACAGAATTTTTCACCCCAAGAATTCAAAAAATAGAAGAATACCCTCCCCCTT 673 consensus_4472#1 TTGCGGGGACAGAATTTTTCACCCCAAGAATTCAAAAAATAGGAGAATACCCTCCCCCTT 824 ****************************************** ***************** consensus_4472#0 TTCATCCCAGCACCAATGAGGACAACAGCGTGTCCTATCTGTGCGTGCAATTGTTTTTCA 733 consensus_4472#1 GTCTCG------------------------------------------------------ 830 ** consensus_4472#0 CCAGATTTTGATCGAGGGGACTTGTATATCTGGCAATAGCGGAGGAGACTTCTTCTTTTT 793 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 CCAGGAATGTAGGTAGCAACCATCGGAATGCCCTCTGCTAAGTTCTGACAAATAGTCTCA 853 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 AAGTCATCTCGTGGAATTGTGGATACATCTCTTGCAACATATCGGTTACCAGATTTCTCT 913 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 TTAGTGATCCCTTCTGATCTGAGAATCAGCGCGGTATGAAGGACACGGTGTAGGCCGTAA 973 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 TCTCTTGTAAGGCAGTTGATAGAAAGCACCTCAGGAAACTTATCCTCAAACTTTTTGTGC 1033 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 AGCTCAAATGGATCAATGCATTGCACCAGATCTGGGTCCTTGCCTTCCGAAATGCTAAAC 1093 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 ACCCTTTCCATAATCTCTACCGCTTTTGAGTATGCGAAAGCAACACATAGGGATTGTTCG 1153 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 CCTTGATCGTGAACTTCACCTACAACCTTTTTTTCCTGTGCATTTATTTCCCCCAAGCAA 1213 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 AATTTAAAACTTCCGCAAAACTTTTTGCCGCAATCACTGTTGGTGCAGTGAAATGCTGGA 1273 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 AGCTTGAAGAATAGGTGTTTTGTGGGTCTATTGATTGTTCCGCATGCTCGGCACTTCCAG 1333 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 GCTTTAGCATCATTACAGCTTCGAAGTCCCCTTCGTTTCGCCATGGTTACAACAGAATTC 1393 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 GGGGGGAGGCGAGACGGAGATGGCAGCCGTGGAGGTCGGCAGTACGGCTCGGCGCGGCGG 1453 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 GCCTGCAGTAGAGGGCGGCGGCGGGGCCCGGATGCCAGAGGCTGGGTGGTGCGCCGACGA 1513 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 GTAAGCCTCGCCTCGCCTCGCCTCGCCCCGCGGCGG 1549 consensus_4472#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||