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Oryza sativa
cluster # 4487 cluster # 4487       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4487#0 length = 1459 sequences # 3  

consensusID : consensus_4487#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1459
fasta sequence
                              [GGCTAGAAGTCACTATTTATCATCAGTGACGTGTCCCTCTATAAAGGGTAACAGGCTGATCATTCCCCGTGAGAGTCTGGACCTAGCAATTGGAAGGTTAAAGGCACAGGAGGCTTCATCGAGGAAGTCTTCTGAAAAAATTAAGATTTTGGCAAAAGATGAATTCGAGCGCAATTTCATTTCAGCAGTTGTACCTCCCAATGAAATTGGAGTAAAATTTGATGATATTGGTGCTCTTGAGGATGTTAAGAAGACACTGGATGAACTTGTTACTCTTCCAATGAGGAGACCAGAGCTTTTTTCTCATGGGAACTTGTTAAGGCCTTGCAAAGGTATATTGCTTTTTGGACCTCCAGGGACAGGGAAAACACTTTTGGCAAAGGCACTTGCAACAGAAGCTGGAGCAAATTTTATCAGCATAACTGGTTCTAATCTTACATCAAAGTGGTTTGGAGACGCTGAGAAGCTCACTAAGGCCCTTTTCTCCTTTGCTAGTCGGCTAGCACCTGTTATCATATTTGTGGACGAGGTTGATAGCTTACTTGGTGCAAGAGGTGGTGCATTTGAACACGAAGCAACAAGAAGAATGCGGAATGAATTCATGGCAGCTTGGGATGGTTTAAGATCCAAAGAGAACCAAAGGATCCTTATTCTTGGTGCAACAAACCGTCCATTTGATCTAGATGATGCAGTAATTCGGCGTTTACCTAGGCGGATATACGTTGACCTTCCGGACTCACAGAATCGAATGAAAATTCTGAAGATTTTACTTGCAAAAGAAAACCTGGAATCTGATTTCAGATTTGACGAACTAGCCAATGCAACTGAGGGTTACTCTGGTAGTGACTTGAAGAACCTATGCATCGCAGCTGCGTACAGACCAGTTCATGAGCTTCTAGAAGAAGAAAAGGGAGGCGTTAGTGGCACAAAAATATCTTTGAGGCCCTTAAAGTTGGAGGATTTTGTGCAAGCAAAAGCAAAGGTAAGTCCATCCGTCGCTTTTGACGCCACGAGCATGAACGAGTTACGAAAATGGAACGAGCAGTACGGGGAAGGTGGAAGCAGGAGTAAATCACCATTTGGGTTCGGCAGCTAACATTGTTCTGTCAGTATTTTTAGTTCTCACATTGTATCATCTGCATCATTAGCGAGCTCCAACTTTAGCCATAGGAAGCCAGCAATAGGCGCTTCTTTCTCTGATGTGCCCGCCTCCTTTCCTTTTCACCTATATCCTATTTCAGAGTTATGTGATCCCTGTATCAATAGAGAAACACCTAATCACACCAAATTTTCCTGAGCCTTTTTGAACAAGTGCTCCGTCCTCCTGTTGTAATTTTGATGCATCCCTCTGTTGAAACCTGACCAAACTGTAAATAGCCGAAGAAGAAATTTTGTCCCGAGACAACAGATAATATGCTGTTACAACAAAATAAATCCCAT-ATTCTTTCAAAAAAAAAAA]

[+] EMBL AK058549             [GGCTAGAAGTCACTATTTATCATCAGTGACGTGTCCCTCTATAAAGGGTAACAGGCTGATCATTCCCCGTGAGAGTCTGGACCTAGCAATTGGAAGGTTAAAGGCACAGGAGGCTTCATCGAGGAAGTCTTCTGAAAAAATTAAGATTTTGGCAAAAGATGAATTCGAGCGCAATTTCATTTCAGCAGTTGTACCTCCCAATGAAATTGGAGTAAAATTTGATGATATTGGTGCTCTTGAGGATGTTAAGAAGACACTGGATGAACTTGTTACTCTTCCAATGAGGAGACCAGAGCTTTTTTCTCATGGGAACTTGTTAAGGCCTTGCAAAGGTATATTGCTTTTTGGACCTCCAGGGACAGGGAAAACACTTTTGGCAAAGGCACTTGCAACAGAAGCTGGAGCAAATTTTATCAGCATAACTGGTTCTAATCTTACATCAAAGTGGTTTGGAGACGCTGAGAAGCTCACTAAGGCCCTTTTCTCCTTTGCTAGTCGGCTAGCACCTGTTATCATATTTGTGGACGAGGTTGATAGCTTACTTGGTGCAAGAGGTGGTGCATTTGAACACGAAGCAACAAGAAGAATGCGGAATGAATTCATGGCAGCTTGGGATGGTTTAAGATCCAAAGAGAACCAAAGGATCCTTATTCTTGGTGCAACAAACCGTCCATTTGATCTAGATGATGCAGTAATTCGGCGTTTACCTAGGCGGATATACGTTGACCTTCCGGACTCACAGAATCGAATGAAAATTCTGAAGATTTTACTTGCAAAAGAAAACCTGGAATCTGATTTCAGATTTGACGAACTAGCCAATGCAACTGAGGGTTACTCTGGTAGTGACTTGAAGAACCTATGCATCGCAGCTGCGTACAGACCAGTTCATGAGCTTCTAGAAGAAGAAAAGGGAGGCGTTAGTGGCACAAAAATATCTTTGAGGCCCTTAAAGTTGGAGGATTTTGTGCAAGCAAAAGCAAAGGTAAGTCCATCCGTCGCTTTTGACGCCACGAGCATGAACGAGTTACGAAAATGGAACGAGCAGTACGGGGAAGGTGGAAGCAGGAGTAAATCACCATTTGGGTTCGGCAGCTAACATTGTTCTGTCAGTATTTTTAGTTCTCACATTGTATCATCTGCATCATTAGCGAGCTCCAACTTTAGCCATAGGAAGCCAGCAATAGGCGCTTCTTTCTCTGATGTGCCCGCCTCCTTTCCTTTTCACCTATATCCTATTTCAGAGTTATGTGATCCCTGTATCAATAGAGAAACACCTAATCACACCAAATTTTCCTGAGCCTTTTTGAACAAGTGCTCCGTCCTCCTGTTGTAATTTTGATGCATCCCTCTGTTGAAACCTGACCAAACTGTAAATAGCCGAAGAAGAAATTTTGTCCCGAGACAACAGATAATATGCTGTTACAACAAAATAAATCCCAT ATTCTTT            ]
[+] EMBL AU160894             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCTAGGCGGATATACGTTGACCTTCCGGACTCACAGAATCGAATGAAAATTCTGAAGATTTTACTTGCAAAAGAAAACCTGGAATCTGATTTCAGATTTGACGAACTAGCCAATGCAACTGAGGGTTACTCTGGTAGTGACTTGAAGAACCTATGCATCGCAGCTGCGTACAGACCAGTTCATGAGCTTCTAGAAGAAGAAAAGGGAGGCGTTAGTGGCACAAAAATATCTTTGAGGCCCTTAAAGTTGGAGGATTTTGTGCAAGCAAAAGCAAAGGTAAGTCCATCCGTCGCTTTTGACGCCACGAGCATGAACGAGTTACGAAAATGGAACGAGCAGTACGGGGAAGGTGGAAGCAGGAGTAAATCACCATTTGGGTTCGGCAGCTAACATTGTTCTGTCAGTATTTTTAGTTCTCACATTGTATCATCTGCATCATTAGCGAGCTCCAACTTTAGCCATAGGAAGCCAGCAATAGGCGCTTCTTTCTCTGATGTGCCCGCCTCCTTTCCTTTTCACCTATATCCTATTTCAGAGTTATGTGATCCCTGTATCAATAGAGAAACACCTAATCACACCAAATTTTCCTGAGCCTTTTTGAACAAGTGCTCCGTCCTCCT                                                                                                                                      ]
[+] EMBL C97116               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TAGNTCTCACATTGTATCATCTGCATCATTAGCGAGCTCCAACTTTAGCCATAGGAAGCCAGCAATAGGCGCTTCTTTCTCTGATGTGCCCGCCTCCTTTCCTTTTCACCTATANCCTATTTCAGAGTTATGTGANCCCTGTATCAATAGAGAAACACCTAATCACACCAAATTTTCCTGAGCCTTTTTGNANAAGTGCTCCGTCCTCCTGTTGTAATTTTGATGCATCCCTCTGTTGAAACCTGACCAAACTGTAAATAGCCGAAGNAGNAATTTTGTCCCGAGACNACAGATNATATGCTGTTACNACAAAATAAANCCCATCATTNATCCAAAAAAAAAAA]


>consensus_4487#0 GGCTAGAAGTCACTATTTATCATCAGTGACGTGTCCCTCTATAAAGGGTAACAGGCTGAT CATTCCCCGTGAGAGTCTGGACCTAGCAATTGGAAGGTTAAAGGCACAGGAGGCTTCATC GAGGAAGTCTTCTGAAAAAATTAAGATTTTGGCAAAAGATGAATTCGAGCGCAATTTCAT TTCAGCAGTTGTACCTCCCAATGAAATTGGAGTAAAATTTGATGATATTGGTGCTCTTGA GGATGTTAAGAAGACACTGGATGAACTTGTTACTCTTCCAATGAGGAGACCAGAGCTTTT TTCTCATGGGAACTTGTTAAGGCCTTGCAAAGGTATATTGCTTTTTGGACCTCCAGGGAC AGGGAAAACACTTTTGGCAAAGGCACTTGCAACAGAAGCTGGAGCAAATTTTATCAGCAT AACTGGTTCTAATCTTACATCAAAGTGGTTTGGAGACGCTGAGAAGCTCACTAAGGCCCT TTTCTCCTTTGCTAGTCGGCTAGCACCTGTTATCATATTTGTGGACGAGGTTGATAGCTT ACTTGGTGCAAGAGGTGGTGCATTTGAACACGAAGCAACAAGAAGAATGCGGAATGAATT CATGGCAGCTTGGGATGGTTTAAGATCCAAAGAGAACCAAAGGATCCTTATTCTTGGTGC AACAAACCGTCCATTTGATCTAGATGATGCAGTAATTCGGCGTTTACCTAGGCGGATATA CGTTGACCTTCCGGACTCACAGAATCGAATGAAAATTCTGAAGATTTTACTTGCAAAAGA AAACCTGGAATCTGATTTCAGATTTGACGAACTAGCCAATGCAACTGAGGGTTACTCTGG TAGTGACTTGAAGAACCTATGCATCGCAGCTGCGTACAGACCAGTTCATGAGCTTCTAGA AGAAGAAAAGGGAGGCGTTAGTGGCACAAAAATATCTTTGAGGCCCTTAAAGTTGGAGGA TTTTGTGCAAGCAAAAGCAAAGGTAAGTCCATCCGTCGCTTTTGACGCCACGAGCATGAA CGAGTTACGAAAATGGAACGAGCAGTACGGGGAAGGTGGAAGCAGGAGTAAATCACCATT TGGGTTCGGCAGCTAACATTGTTCTGTCAGTATTTTTAGTTCTCACATTGTATCATCTGC ATCATTAGCGAGCTCCAACTTTAGCCATAGGAAGCCAGCAATAGGCGCTTCTTTCTCTGA TGTGCCCGCCTCCTTTCCTTTTCACCTATATCCTATTTCAGAGTTATGTGATCCCTGTAT CAATAGAGAAACACCTAATCACACCAAATTTTCCTGAGCCTTTTTGAACAAGTGCTCCGT CCTCCTGTTGTAATTTTGATGCATCCCTCTGTTGAAACCTGACCAAACTGTAAATAGCCG AAGAAGAAATTTTGTCCCGAGACAACAGATAATATGCTGTTACAACAAAATAAATCCCAT ATTCTTTCAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)