These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1046 fasta sequence [CTCTGCGACACGGTGGCGACACACACGCTCTCTCACTGCGTCGTCTCCTCTTTCTTTCACCCCGCAGGCACCCATGACTCGTGCGAAGCTGAAGCTGAGCTGATCCGCGCACGCACGCGTGCTGCTGCTGCTTGTTGCTTCTCCACTTCTCTTCTCCCTCTAGCTACCACCTCACTACTGCCGGGACAGTAGGCCGCGCTAGCTGTAAGCTGCTCGTCTCGAGATCTCGCGAGCTACGTACCGGCCATGGCCTCGGCGCGCCGCGGCCGCCGACGGAGAGTCCCGGTCGCCGCCTCGCCGCTCCTCATCCTCCTCGTCTTCCTCCTCGCAGCTTCCCTCGGGGCGTGCAGTTCGGCGAGAAAGAGGAGCGGCGACGGCGGCGGTGCGGTGGCGGAGGAGGTGTACTACTCCAGCTGGGGATCGGCGGTGGCGGTGGCGGGGCGGCGGAGGCTGGTGGGGCCGGGGTCGTCGCCGCCGACGTGCCGGAGCCGGTGCGGCGGCTGCCACCCATGCCGGCCGGTGCACGTGGCCATCCAGCCAGGCCGGAGCTTCCCGCTCGAGTACTACCCGGAGGCGTGGCGCTGCAAGTGCGGCGACAAGCTCTTCATGCCCTGACGGTAATTTGGGACGACCAACGCAATGCACATAAGCGTCGTTCTCGTTCACCACTCCGCCATTGATGACCATTGCTGCTAAGCTGCCCAAGCTTGCTCTTCCCGGCTGCGTCGCCATTGCTGCACGGAGCAAGAGACAATACTGCAGCCAAGAAGGACATTGCTGCGAAGATCGATCAATCACGCAGGCTTCGATGGGTTGGTGTGTGTAACGACATTGTTGAGTTCTTGGAGATTGAACATCGAGTGTAATGCTGCTGTAAGTAGATGCTTGTTTGTTGTGTACAAAAAGAGGGAGCGGACGAGGGCGAGAGATGTTAATGCTGCCATTTTGTTTCTCCTCCTCCTCTCCTTTCATTTGTTTTTTTTTTTCTCTGTTGTTTGTTCTTCCCTTGCGTTTTTTTGGGGAGTGGTTTCCCTACTAATTTGTTC] [+] EMBL AK107770 [CTCTGCGACACGGTGGCGACACACACGCTCTCTCACTGCGTCGTCTCCTCTTTCTTTCACCCCGCAGGCACCCATGACTCGTGCGAAGCTGAAGCTGAGCTGATCCGCGCACGCACGCGTGCTGCTGCTGCTTGTTGCTTCTCCACTTCTCTTCTCCCTCTAGCTACCACCTCACTACTGCCGGGACAGTAGGCCGCGCTAGCTGTAAGCTGCTCGTCTCGAGATCTCGCGAGCTACGTACCGGCCATGGCCTCGGCGCGCCGCGGCCGCCGACGGAGAGTCCCGGTCGCCGCCTCGCCGCTCCTCATCCTCCTCGTCTTCCTCCTCGCAGCTTCCCTCGGGGCGTGCAGTTCGGCGAGAAAGAGGAGCGGCGACGGCGGCGGTGCGGTGGCGGAGGAGGTGTACTACTCCAGCTGGGGATCGGCGGTGGCGGTGGCGGGGCGGCGGAGGCTGGTGGGGCCGGGGTCGTCGCCGCCGACGTGCCGGAGCCGGTGCGGCGGCTGCCACCCATGCCGGCCGGTGCACGTGGCCATCCAGCCAGGCCGGAGCTTCCCGCTCGAGTACTACCCGGAGGCGTGGCGCTGCAAGTGCGGCGACAAGCTCTTCATGCCCTGACGGTAATTTGGGACGACCAACGCAATGCACATAAGCGTCGTTCTCGTTCACCACTCCGCCATTGATGACCATTGCTGCTAAGCTGCCCAAGCTTGCTCTTCCCGGCTGCGTCGCCATTGCTGCACGGAGCAAGAGACAATACTGCAGCCAAGAAGGACATTGCTGCGAAGATCGATCAATCACGCAGGCTTCGATGGGTTGGTGTGTGTAACGACATTGTTGAGTTCTTGGAGATTGAACATCGAGTGTAATGCTGCTGTAAGTAGATGCTTGTTTGTTGTGTACAAAAAGAGGGAGCGGACGAGGGCGAGAGATGTTAATGCTGCCATTTTGTTTCTCCTCCTCCTCTCCTTTCATTTGTTTTTTTTTTTCTCTGTTGTTTGTTCTTCCCTTGCGTTTTTTTGGGGAGTGGTTTCCCTACTAATTTGTTC] consensusID : consensus_449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [GAGTAGATGCTTGTTTGTTGTGTACAAAAAGAGGGAGCGGACGAGGGCGAGAGATGTTAATGCTGCCATTTTGTTTCTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTCTTCCCTTTCCGTACCTTTTCGTTAACAGCAGGGGCAAATTCCGGGCCGTTAAATTAA] [+] EMBL CF331137 [GAGTAGATGCTTGTTTGTTGTGTACAAAAAGAGGGAGCGGACGAGGGCGAGAGATGTTAATGCTGCCATTTTGTTTCTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTCTTCCCTTTCCGTACCTTTTCGTTAACAGCAGGGGCAAATTCCGGGCCGTTAAATTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_449#0 CTCTGCGACACGGTGGCGACACACACGCTCTCTCACTGCGTCGTCTCCTCTTTCTTTCAC 60 consensus_449#1 ------------------------------------------------------------ consensus_449#0 CCCGCAGGCACCCATGACTCGTGCGAAGCTGAAGCTGAGCTGATCCGCGCACGCACGCGT 120 consensus_449#1 ------------------------------------------------------------ consensus_449#0 GCTGCTGCTGCTTGTTGCTTCTCCACTTCTCTTCTCCCTCTAGCTACCACCTCACTACTG 180 consensus_449#1 ------------------------------------------------------------ consensus_449#0 CCGGGACAGTAGGCCGCGCTAGCTGTAAGCTGCTCGTCTCGAGATCTCGCGAGCTACGTA 240 consensus_449#1 ------------------------------------------------------------ consensus_449#0 CCGGCCATGGCCTCGGCGCGCCGCGGCCGCCGACGGAGAGTCCCGGTCGCCGCCTCGCCG 300 consensus_449#1 ------------------------------------------------------------ consensus_449#0 CTCCTCATCCTCCTCGTCTTCCTCCTCGCAGCTTCCCTCGGGGCGTGCAGTTCGGCGAGA 360 consensus_449#1 ------------------------------------------------------------ consensus_449#0 AAGAGGAGCGGCGACGGCGGCGGTGCGGTGGCGGAGGAGGTGTACTACTCCAGCTGGGGA 420 consensus_449#1 ------------------------------------------------------------ consensus_449#0 TCGGCGGTGGCGGTGGCGGGGCGGCGGAGGCTGGTGGGGCCGGGGTCGTCGCCGCCGACG 480 consensus_449#1 ------------------------------------------------------------ consensus_449#0 TGCCGGAGCCGGTGCGGCGGCTGCCACCCATGCCGGCCGGTGCACGTGGCCATCCAGCCA 540 consensus_449#1 ------------------------------------------------------------ consensus_449#0 GGCCGGAGCTTCCCGCTCGAGTACTACCCGGAGGCGTGGCGCTGCAAGTGCGGCGACAAG 600 consensus_449#1 ------------------------------------------------------------ consensus_449#0 CTCTTCATGCCCTGACGGTAATTTGGGACGACCAACGCAATGCACATAAGCGTCGTTCTC 660 consensus_449#1 ------------------------------------------------------------ consensus_449#0 GTTCACCACTCCGCCATTGATGACCATTGCTGCTAAGCTGCCCAAGCTTGCTCTTCCCGG 720 consensus_449#1 ------------------------------------------------------------ consensus_449#0 CTGCGTCGCCATTGCTGCACGGAGCAAGAGACAATACTGCAGCCAAGAAGGACATTGCTG 780 consensus_449#1 -----------------------------------------------GAGTAGATGCTTG 13 ** * ** ** consensus_449#0 CGAAGATCGATCAATCACGCAGGCTTCGATGGGTTGGTGTGTGTAACGACATTGTTGAGT 840 consensus_449#1 TTTGTTGTGTACAAAAAGAGGGA-----GCGGACGAGGGCGAGAGATGTTAATGCTGCCA 68 * *** * * ** * * * * * * * ** ** consensus_449#0 TCTTGGAGATTGAACATCGAGTGTAATGCTGCTGTAAGTAGATGCTTGTTTGTTGTGTAC 900 consensus_449#1 TTTTG----TTTCTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 124 * *** ** * ** * ** ** * * * consensus_449#0 AAAAAGAGGGAGCGGACGAGGGCGAGAGATGTTAATGCTGCCATTTTGTTTCTCCTCCTC 960 consensus_449#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTCTTCCCTTTCCGTACCTT 184 ***** * * * * * * * ** ** ** **** *** consensus_449#0 CTCTCCTTTCATTTGTTTTTTTTTTTCTCTGTTGTTTGTTCTTCCCTTGCGTTTTTTTGG 1020 consensus_449#1 TTCGTTAACAGCAGGGGCAAATTCCGGGCCGTTAAATTAA-------------------- 224 ** * ** * *** * consensus_449#0 GGAGTGGTTTCCCTACTAATTTGTTC 1046 consensus_449#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||