These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1096 fasta sequence [TCGTGCCGAATTCGGCACGAGCACAATGGACAGTACAGAATTTGTAAGTTGTTGATTTGCGCCATGAGAAGGCTTCTCCCGCTCGCCGGCGCCACGCTGCTGATCGCGGCGGCCGGCGGCGCCAGCGGGCAACAAGCGGGTGTTGGGTCGATCATCACGCGGGCGATGTTCGAGTCGATGCTGAACCACCGTGGGGACCAAGGTTGCCAAGGCGCCTTCTACACCTACGACGCGTTCATCAAGGCCGCCGGAGATTTCCCTAGATTCGGCACGACCGGCAACGACGAAACGCGCCGGCGCGAGCTCGCCGCTTTCTTTGGCCAGACCTCCCACGAAACTACAGGTGGATGGGCAACTGCTCCTGATGGACCCTTTGCTTGGGGATACTGCCGGGTGAACGAAATCACGCCGTCGGAACCGCCCTACTACGGGCGAAGACCATACACCTTACTCATAAGTACAACTACCAGCTACCGGGGACCCTTGGGTCTGGAACTGGTGAACAACCCCGACCTGGTGTCAAGGACCCCGTGGTGGGTGTTCAGGACGCCCATTTGTTTTTGGATGACGGCGCAGTCACCCAAGCCGTTGTGCCAGGATGTAATCACCAACCAGTGGACCCCTTCCGGCGATGACCGTCTCCGGGAGGTCCCCGGGTACGGCATGCCCACCAACATCATCAACGGCGGTGAAGAGTGCGGCAAGGGTTATTCCACCGACAACGCCAAGGACCGGGTCGGTTACTACAAGAGGTACTGCGACATGTTCCGCGTAGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACTGGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTGCTGGTTGCTTGCTAATGGCTAGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACTAGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCATGTAACAGATATGAGTATATGACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAACGATGCCCCTAGTTAAACTGAAAAAAAA] [+] EMBL OSAF1501 [TCGTGCCGAATTCGGCACGAGCACAATGGACAGTACAGAATTTGTAAGTTGTTGATTTGCGCCATGAGAAGGCTTCTCCCGCTCGCCGGCGCCACGCTGCTGATCGCGGCGGCCGGCGGCGCCAGCGGGCAACAAGCGGGTGTTGGGTCGATCATCACGCGGGCGATGTTCGAGTCGATGCTGAACCACCGTGGGGACCAAGGTTGCCAAGGCGCCTTCTACACCTACGACGCGTTCATCAAGGCCGCCGGAGATTTCCCTAGATTCGGCACGACCGGCAACGACGAAACGCGCCGGCGCGAGCTCGCCGCTTTCTTTGGCCAGACCTCCCACGAAACTACAGGTGGATGGGCAACTGCTCCTGATGGACCCTTTGCTTGGGGATACTGCCGGGTGAACGAAATCACGCCGTCGGAACCGCCCTACTACGGGCGAAGACCATACACCTTACTCATAAGTACAACTACCAGCTACCGGGGACCCTTGGGTCTGGAACTGGTGAACAACCCCGACCTGGTGTCAAGGACCCCGTGGTGGGTGTTCAGGACGCCCATTTGTTTTTGGATGACGGCGCAGTCACCCAAGCCGTTGTGCCAGGATGTAATCACCAACCAGTGGACCCCTTCCGGCGATGACCGTCTCCGGGAGGTCCCCGGGTACGGCATGCCCACCAACATCATCAACGGCGGTGAAGAGTGCGGCAAGGGTTATTCCACCGACAACGCCAAGGACCGGGTCGGTTACTACAAGAGGTACTGCGACATGTTCCGCGTAGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACTGGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTGCTGGTTGCTTGCTAATGGCTAGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACTAGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCATGTAACAGATATGAGTATATGACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAACGATGCCCCTAGTTAAACTGAAAAAAAA] consensusID : consensus_4495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1081 fasta sequence [ACACGATCGAGAAACACAATTGACAGTACAGAATTTGTAAGTTGTTGATTTGCGCCATGAGAAGGCTTCTCCCGCTCGCCGGCGCCACGCTGCTGATCGCGGCGGCCGGCGGCGCCAGCGGGCAGCAGGCGGGTGTTGGGTCGATCATCACGCGGGCGATGTTCGAGTCGATGCTGAGCCACCGTGGGGACCAAGGTTGCCAGGGCGCCTTCTACACCTACGACGCGTTCATCAAGGCCGCCGGAGATTTCCCTAGATTCGGCACGACCGGCAACGACGAAACGCGCCGGCGCGAGCTCGCCGCTTTCTTTGGCCAGACCTCCCACGAAACTACAGGTGGATGGGCAACTGCTCCTGATGGACCCTTTGCTTGGGGATACTGCCGGGTGAACGAGATCACGCCGTCGGACCCGCCCTACTACGGCCGAGGACCCATACAGCTTACTCATAAGTACAACTACCAGCTAGCCGGGGACGCGTTGGGTCTGGACCTGGTGAACAACCCCGACCTGGTGTCAAGCGACCCCGTGGTGGCGTTCAGGACGGCCATCTGGTTCTGGATGACGGCGCAGTCACCCAAGCCGTCGTGCCACGACGTAATCACCAACCAGTGGACGCCGTCCGGCGATGACCGTAGCTCCGGGAGGCTCCCCGGCTACGGCATGGCCACCAACATCATCAACGGCGGTGAAGAGTGCGGCAAGGGCTACTCCACCGACAACGCCAAGGACCGGGTCGGCTACTACAAGAGGTACTGCGACATGTTCCGCGTAGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACTGGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTGCTGGTTGCTTGCTAATGGCTAGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACTAGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCATGTAACAGATATGAGTATATGACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAACGATGCCCCTAGTT] [+] EMBL AK059871 [ACACGATCGAGAAACACAATTGACAGTACAGAATTTGTAAGTTGTTGATTTGCGCCATGAGAAGGCTTCTCCCGCTCGCCGGCGCCACGCTGCTGATCGCGGCGGCCGGCGGCGCCAGCGGGCAGCAGGCGGGTGTTGGGTCGATCATCACGCGGGCGATGTTCGAGTCGATGCTGAGCCACCGTGGGGACCAAGGTTGCCAGGGCGCCTTCTACACCTACGACGCGTTCATCAAGGCCGCCGGAGATTTCCCTAGATTCGGCACGACCGGCAACGACGAAACGCGCCGGCGCGAGCTCGCCGCTTTCTTTGGCCAGACCTCCCACGAAACTACAGGTGGATGGGCAACTGCTCCTGATGGACCCTTTGCTTGGGGATACTGCCGGGTGAACGAGATCACGCCGTCGGACCCGCCCTACTACGGCCGAGGACCCATACAGCTTACTCATAAGTACAACTACCAGCTAGCCGGGGACGCGTTGGGTCTGGACCTGGTGAACAACCCCGACCTGGTGTCAAGCGACCCCGTGGTGGCGTTCAGGACGGCCATCTGGTTCTGGATGACGGCGCAGTCACCCAAGCCGTCGTGCCACGACGTAATCACCAACCAGTGGACGCCGTCCGGCGATGACCGTAGCTCCGGGAGGCTCCCCGGCTACGGCATGGCCACCAACATCATCAACGGCGGTGAAGAGTGCGGCAAGGGCTACTCCACCGACAACGCCAAGGACCGGGTCGGCTACTACAAGAGGTACTGCGACATGTTCCGCGTAGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACTGGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTGCTGGTTGCTTGCTAATGGCTAGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACTAGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCATGTAACAGATATGAGTATATGACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAA ] [+] EMBL AK099355 [ CGATCGAGAAACACAATTGACAGTACAGAATTTGTAAGTTGTTGATTTGCGCCATGAGAAGGCTTCTCCCGCTCGCCGGCGCCACGCTGCTGATCGCGGCGGCCGGCGGCGCCAGCGGGCAGCAGGCGGGTGTTGGGTCGATCATCACGCGGGCGATGTTCGAGTCGATGCTGAGCCACCGTGGGGACCAAGGTTGCCAGGGCGCCTTCTACACCTACGACGCGTTCATCAAGGCCGCCGGAGATTTCCCTAGATTCGGCACGACCGGCAACGACGAAACGCGCCGGCGCGAGCTCGCCGCTTTCTTTGGCCAGACCTCCCACGAAACTACAGGTGGATGGGCAACTGCTCCTGATGGACCCTTTGCTTGGGGATACTGCCGGGTGAACGAGATCACGCCGTCGGACCCGCCCTACTACGGCCGAGGACCCATACAGCTTACTCATAAGTACAACTACCAGCTAGCCGGGGACGCGTTGGGTCTGGACCTGGTGAACAACCCCGACCTGGTGTCAAGCGACCCCGTGGTGGCGTTCAGGACGGCCATCTGGTTCTGGATGACGGCGCAGTCACCCAAGCCGTCGTGCCACGACGTAATCACCAACCAGTGGACGCCGTCCGGCGATGACCGTAGCTCCGGGAGGCTCCCCGGCTACGGCATGGCCACCAACATCATCAACGGCGGTGAAGAGTGCGGCAAGGGCTACTCCACCGACAACGCCAAGGACCGGGTCGGCTACTACAAGAGGTACTGCGACATGTTCCGCGTAGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACTGGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTGCTGGTTGCTTGCTAATGGCTAGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACTAGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCATGTAACAGATATGAGTATATGACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAACGATGCCCCTAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4495#0 TCGTGCCGAATTCGGCACGAGCACAATGGACAGTACAGAATTTGTAAGTTGTTGATTTGC 60 consensus_4495#1 -----ACACGATCGAGA--AACACAATTGACAGTACAGAATTTGTAAGTTGTTGATTTGC 53 * *** * * ****** ******************************** consensus_4495#0 GCCATGAGAAGGCTTCTCCCGCTCGCCGGCGCCACGCTGCTGATCGCGGCGGCCGGCGGC 120 consensus_4495#1 GCCATGAGAAGGCTTCTCCCGCTCGCCGGCGCCACGCTGCTGATCGCGGCGGCCGGCGGC 113 ************************************************************ consensus_4495#0 GCCAGCGGGCAACAAGCGGGTGTTGGGTCGATCATCACGCGGGCGATGTTCGAGTCGATG 180 consensus_4495#1 GCCAGCGGGCAGCAGGCGGGTGTTGGGTCGATCATCACGCGGGCGATGTTCGAGTCGATG 173 *********** ** ********************************************* consensus_4495#0 CTGAACCACCGTGGGGACCAAGGTTGCCAAGGCGCCTTCTACACCTACGACGCGTTCATC 240 consensus_4495#1 CTGAGCCACCGTGGGGACCAAGGTTGCCAGGGCGCCTTCTACACCTACGACGCGTTCATC 233 **** ************************ ****************************** consensus_4495#0 AAGGCCGCCGGAGATTTCCCTAGATTCGGCACGACCGGCAACGACGAAACGCGCCGGCGC 300 consensus_4495#1 AAGGCCGCCGGAGATTTCCCTAGATTCGGCACGACCGGCAACGACGAAACGCGCCGGCGC 293 ************************************************************ consensus_4495#0 GAGCTCGCCGCTTTCTTTGGCCAGACCTCCCACGAAACTACAGGTGGATGGGCAACTGCT 360 consensus_4495#1 GAGCTCGCCGCTTTCTTTGGCCAGACCTCCCACGAAACTACAGGTGGATGGGCAACTGCT 353 ************************************************************ consensus_4495#0 CCTGATGGACCCTTTGCTTGGGGATACTGCCGGGTGAACGAAATCACGCCGTCGGAACCG 420 consensus_4495#1 CCTGATGGACCCTTTGCTTGGGGATACTGCCGGGTGAACGAGATCACGCCGTCGGACCCG 413 ***************************************** ************** *** consensus_4495#0 CCCTACTACGGGCGAAGACC-ATACACCTTACTCATAAGTACAACTACCAGCTA-CCGGG 478 consensus_4495#1 CCCTACTACGGCCGAGGACCCATACAGCTTACTCATAAGTACAACTACCAGCTAGCCGGG 473 *********** *** **** ***** *************************** ***** consensus_4495#0 GACCC-TTGGGTCTGGAACTGGTGAACAACCCCGACCTGGTGTCAAG-GACCCCGTGGTG 536 consensus_4495#1 GACGCGTTGGGTCTGGACCTGGTGAACAACCCCGACCTGGTGTCAAGCGACCCCGTGGTG 533 *** * *********** ***************************** ************ consensus_4495#0 GGTGTTCAGGACGCCCATTTGTTTTTGGATGACGGCGCAGTCACCCAAGCCGTTGTGCCA 596 consensus_4495#1 G-CGTTCAGGACGGCCATCTGGTTCTGGATGACGGCGCAGTCACCCAAGCCGTCGTGCCA 592 * ********** **** ** ** **************************** ****** consensus_4495#0 GGATGTAATCACCAACCAGTGGACCCCTTCCGGCGATGACCGT--CTCCGGGAGG-TCCC 653 consensus_4495#1 CGACGTAATCACCAACCAGTGGACGCCGTCCGGCGATGACCGTAGCTCCGGGAGGCTCCC 652 ** ******************** ** *************** ********** **** consensus_4495#0 CGGGTACGGCATGCCCACCAACATCATCAACGGCGGTGAAGAGTGCGGCAAGGGTTATTC 713 consensus_4495#1 CGGCTACGGCATGGCCACCAACATCATCAACGGCGGTGAAGAGTGCGGCAAGGGCTACTC 712 *** ********* **************************************** ** ** consensus_4495#0 CACCGACAACGCCAAGGACCGGGTCGGTTACTACAAGAGGTACTGCGACATGTTCCGCGT 773 consensus_4495#1 CACCGACAACGCCAAGGACCGGGTCGGCTACTACAAGAGGTACTGCGACATGTTCCGCGT 772 *************************** ******************************** consensus_4495#0 AGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACT 833 consensus_4495#1 AGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACT 832 ************************************************************ consensus_4495#0 GGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTG 893 consensus_4495#1 GGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTG 892 ************************************************************ consensus_4495#0 CTGGTTGCTTGCTAATGGCTAGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACT 953 consensus_4495#1 CTGGTTGCTTGCTAATGGCTAGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACT 952 ************************************************************ consensus_4495#0 AGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCATGTAACAGATATGAGTATATG 1013 consensus_4495#1 AGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCATGTAACAGATATGAGTATATG 1012 ************************************************************ consensus_4495#0 ACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAACGATG 1073 consensus_4495#1 ACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAACGATG 1072 ************************************************************ consensus_4495#0 CCCCTAGTTAAACTGAAAAAAAA 1096 consensus_4495#1 CCCCTAGTT-------------- 1081 ********* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||