Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4509 cluster # 4509       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4509#0 length = 855 sequences # 3  

consensusID : consensus_4509#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 855
fasta sequence
                              [ATAACAGCTTATTTTTCATATGAACACGGCGTGCCTTATCAGATATGACACTGCGTTCCGATTAACTTGGTATTACAGGAGTCAATACACAGTTCAAAGACATGAGTGAACTACAACATGCTTCAACAGCACTAAGCTTTTATTGGATGTGCTGCATACAGTTCTCCAAGATGTGACAATTAATCTCAACACTTCTCACATTCTGCTCATGTCCTTGTGTGCCGGCTGCCGAACTATTAGAAGCAACACATGGTGTGTAATAATGCGGATTTGAAATAACAAATGAAACAAAGACTGAATGAATGAATTAGAACCTTGTTTCAAACTGACTAGGAAGCAAGAAAAGCTTCAAGCT-GCAAATAGACCCTAAACACCTCCGACTGGTCTAGCATCAAAACAATGGATATGAGATGAGGATGACCGTCAGGTGCACATTCAGAATGAAATAAGGATTGGATCCATAGTTACTAAGCCTTTCCAGCTCTATTCATCATTGGATGTGATTCCAGGTTCATCGTCGCTGCTCCCCTCCTGATGCAACTAATGACCACAAATAGTGGTATGACAGGGATAGCGAAGCTATGTGAAACTCACAGAATCATAAGCTGGGGGAAAAGAATCCTAAATGCGAAGGCCTGGAACAGCATCACGCCCTGAGTTGGGATCGCTGTGTTTTAGAGACATGTTTGCAAATTGCGAATCGAGGTCTCTGCTGTTACTACGACTGTGGGTAGGACCCTGCTGCTGTGGTATGTGCTGCTGCTGTTGCTGTTGCTGAAACAATGATCTGAGACGGCCAATTTCCCGTTCAAACATCTCCTGTTGTAAGNGTTTAATTAGGTGTTCTCNTNGNAA]

[+] EMBL CB618799             [ATAACAGCTTATTTTTCATATGAACACGGCGTGCCTTATCAGATATGACACTGCGTTCCGATTAACTTGGTATTACAGGAGTCAATACACAGTTCAAAGACATGAGTGAACTACAACATGCTTCAACAGCACTAAGCTTTTATTGGATGTGCTGCATACAGTTCTCCAAGATGTGACAATTAATCTCAACACTTCTCACATTCTGCTCATGTCCTTGTGTGCCGGCTGCCGAACTATTAGAAGCAACACATGGTGTGTAATAATGCGGATTTGAAATAACAAATGAAACAAAGACTGAATGAATGAATTAGAACCTTGTTTCAAACTGACTAGGAAGCAAGAAAAGCTTCAAGCT GCAAATAGACCCTAAACACCTCCGACTGGTCTAGCATCAAAACAATGGATATGAGATGAGGATGACCGTCAGGTGCACATTCAGAATGAAATAAGGATTGGATCCATAGTTACTAAGCCTTTCCAGCTCTATTCATCATTGGATGTGATTCCAGGTTCATCGTCGCTGCTCCCCTCCTGATGCAACTAATGACCACAAATAGTGGTATGACAGGGATAGCGAAGCTATGTGAAACTCACAGAATCATAAGCTGGGGGAAAAGAATCCTAAATGCGAAGGCCTGGAACAGCATCACGCCCTGAGTTGGGATCGCTGTGTTTTAGAGACATGTTTGCAAATTGCGAATCGAGGTCTCTGCTGTTACTACGACTGTGGGTAGGACCCTGCTGCTGTGGTATGTGCTGCTGCTGTTGCTGTTGCTGAA                                                                            ]
[-] EMBL C98313               [       tTTTTTTTTCATATGAACACGGCGTGCCTTATCAGATATGACACTGCGTTCCGATTAACTTGGTATTACAGGAGTCAATACACAGTTCAAAGACATGAGAGAACTACAACATGCTTCAACAGCACTAAGCTTTTATTGGATGTGCTGCATACAGTTCTCCAAGACGTGACAATTAATCTCAACACTTCTCACATTCTGCTCATGTCCTTGTGTGCCGGCTGCCGAACTATTAGAAGCAACACATGGTGTGTAATAATGCGGATTTGAAATAACAAATGAAACAAAGACTGAATGAATGAATTAGAACCTTGTTTCAAACTGACTAGGAAGCAAGAAAAGCTTCAAGCTGGCAAATAGACCCTAAACACCTCCGACTGGTCTAGCATCAAAACAATGGGTATGAGATGNGGATGACCGNCA GTGCACGTTCAGAATGAAATAAGGATTGNGTCCATAGTTACTAAGCCT                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL OS1556A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  anCGTCGCTGCNCCCCTCCTGATGCAACTAATGACCACAAATAGTGGTATGACAGGGATAGCGAAGCTATGTGAAACTCACAGAATCATAAGCTGGGGGAAAAGAATCCTAAATGCGAAGGCCTGGAACAGCATCACGCCCTGAGTTGGGATCGCCGTGTTTTAGAGACATGTTTGCAAATTGCGAATCGAGGTCTCTGCTGTTACTACGACTGTGGGTAGGACCCTGCTGCTGTGGTATGTGCTGCTGCTGTTGCTGTTGCTGAAACAATGATCTGAGACGGCCAATTTCCCGTTCAAACATCTCCTGTTGTAAGNGTTTAATTAGGTGTTCTCNTNGNAA]


>consensus_4509#0 ATAACAGCTTATTTTTCATATGAACACGGCGTGCCTTATCAGATATGACACTGCGTTCCG ATTAACTTGGTATTACAGGAGTCAATACACAGTTCAAAGACATGAGTGAACTACAACATG CTTCAACAGCACTAAGCTTTTATTGGATGTGCTGCATACAGTTCTCCAAGATGTGACAAT TAATCTCAACACTTCTCACATTCTGCTCATGTCCTTGTGTGCCGGCTGCCGAACTATTAG AAGCAACACATGGTGTGTAATAATGCGGATTTGAAATAACAAATGAAACAAAGACTGAAT GAATGAATTAGAACCTTGTTTCAAACTGACTAGGAAGCAAGAAAAGCTTCAAGCTGCAAA TAGACCCTAAACACCTCCGACTGGTCTAGCATCAAAACAATGGATATGAGATGAGGATGA CCGTCAGGTGCACATTCAGAATGAAATAAGGATTGGATCCATAGTTACTAAGCCTTTCCA GCTCTATTCATCATTGGATGTGATTCCAGGTTCATCGTCGCTGCTCCCCTCCTGATGCAA CTAATGACCACAAATAGTGGTATGACAGGGATAGCGAAGCTATGTGAAACTCACAGAATC ATAAGCTGGGGGAAAAGAATCCTAAATGCGAAGGCCTGGAACAGCATCACGCCCTGAGTT GGGATCGCTGTGTTTTAGAGACATGTTTGCAAATTGCGAATCGAGGTCTCTGCTGTTACT ACGACTGTGGGTAGGACCCTGCTGCTGTGGTATGTGCTGCTGCTGTTGCTGTTGCTGAAA CAATGATCTGAGACGGCCAATTTCCCGTTCAAACATCTCCTGTTGTAAGNGTTTAATTAG GTGTTCTCNTNGNAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)