Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4529 cluster # 4529       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4529#0 length = 684 sequences # 2  
consensus_4529#1 length = 457 sequences # 1  

consensusID : consensus_4529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 684
fasta sequence
                              [TTTTTTTTTTTTTTTTGCCACCCACCAACCATTTTAAACAATAACGCCAAGTCGAGACTCGAGAGTGAAAAGGCACAGAAGCACTGCTCATAACTGAAATCACTCGGGCAGTAATGCCGTTATGTCAAGTTGTCAACACCTTCAGAGTTCAAAAAGAAGGCAAAGAAAACTCACGAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATAAACGGAAAAAAAA-AAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGGGAGGCTGTATAATCCGAATCCCTGATAATTAGGGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGGGACTATGCTTTGCAATAGGGCAGTGACTCCCGTAGAACACCATGATCCATACACACCACGCGCTTTCAGTTCCGGCTCC-ACAAAGGAAAAAAAACCCTCAGGAAGTCTCAGAGAGAGAGAGAAAATGGTGCTACCTTCATACTTATGGATGGTCTAACTTGAGCAGCTCACACTCAAAAGAAATGGGTTTGGCGGGCCTA]

[+] EMBL CA763386             [TTTTTTTTTTTTTTTTGCCACCCACCAACCATTTTAAACAATAACGCCAAGTCGAGACTCGAGAGTGAAAAGGCACAGAAGCACTGCTCATAACTGAAATCACTCGGGCAGTAATGCCGTTATGTCAAGTTGTCAACACCTTCAGAGTTCAAAAAGAAGGCAAAGAAAACTCACGAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATAAACGGAAAAAAAA AAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGGGAGGCTGTATAATCCGAATCCCTGATAATTAGGGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGGGACTATGCTTTGCAATAGGGCAGTGACTCCCGTAGAACACCATGATCCATACACACCACGCGCTTTCAGTTCCGGCTCC ACAAAGGAAAAAAAACCCTCAGGAAGTCTCAGAGAGAGAGAGAAAATGGTGCTACCTTCATACTTATGGATGGTCTAACTTGAGCAGCTCACACTCAAAAGAAATGGGTTTGGCGGGCCTA]
[+] EMBL CB636732             [                                                                                                                 ATGCCGTTATGTTCAGTTGTCAACACCTTCAGAGTTCAGAAAGAAGGCAAAGAAAACTCACGAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATTAACGGAAAAAAAATAAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGTGAGGCTGTATAATCCGAATCCCTGATAATTAGTGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGTGACTATGCTTTGCAATAGTGCAGTGACTCCCGTAGAACACCATGATCCATGCACACCACGCGCTTTCAGTTCCGGCTCCAACAAAGGAAAAAAAACCCTCAGGAAGTCTCAAAGAAAGAGAGAAAATGTTGCTACCTTCATGCTTATGt                                                    ]


>consensus_4529#0 TTTTTTTTTTTTTTTTGCCACCCACCAACCATTTTAAACAATAACGCCAAGTCGAGACTC GAGAGTGAAAAGGCACAGAAGCACTGCTCATAACTGAAATCACTCGGGCAGTAATGCCGT TATGTCAAGTTGTCAACACCTTCAGAGTTCAAAAAGAAGGCAAAGAAAACTCACGAGCAC AGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGT TGTGCCTACATTCTTATAAACGGAAAAAAAAAAAACAGTTCTGAAGTACCACGGCTGCGC GGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACAC GGTTACTGTATCCTCATTCTCCATTTCTCGGGGAGGCTGTATAATCCGAATCCCTGATAA TTAGGGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTG CAGGGACTATGCTTTGCAATAGGGCAGTGACTCCCGTAGAACACCATGATCCATACACAC CACGCGCTTTCAGTTCCGGCTCCACAAAGGAAAAAAAACCCTCAGGAAGTCTCAGAGAGA GAGAGAAAATGGTGCTACCTTCATACTTATGGATGGTCTAACTTGAGCAGCTCACACTCA AAAGAAATGGGTTTGGCGGGCCTA



consensusID : consensus_4529#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATAAACGGAAAAAAAATAAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGTGAGGCTGTATAATCCGAATCCCTGATAATTAGTGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGTGGACTATGCTTTGNAATAGTGCAGTGACTCCCGTAAGAACACCATGATCCATGCACACCACGCGCTTTCAGTTCCGGCTCCAACAAAGGAAAAAAAACCCTCAGGAAGNCTCAGGAGAAAGAG]

[-] EMBL C97390               [TTTTTTTTTTTTTTTTTTTTTTTTAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATAAACGGAAAAAAAATAAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGTGAGGCTGTATAATCCGAATCCCTGATAATTAGTGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGTGGACTATGCTTTGNAATAGTGCAGTGACTCCCGTAAGAACACCATGATCCATGCACACCACGCGCTTTCAGTTCCGGCTCCAACAAAGGAAAAAAAACCCTCAGGAAGNCTCAGGAGAAAGAG]


>consensus_4529#1 TTTTTTTTTTTTTTTTTTTTTTTTAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGA TACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATAAACGGAAAAAAAA TAAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGC CCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCG GTGAGGCTGTATAATCCGAATCCCTGATAATTAGTGAGGATCCAGCTCAAGAAACGAGTT CTACCTCAGGATCTATGCTTTGCAATACTGCAGTGGACTATGCTTTGNAATAGTGCAGTG ACTCCCGTAAGAACACCATGATCCATGCACACCACGCGCTTTCAGTTCCGGCTCCAACAA AGGAAAAAAAACCCTCAGGAAGNCTCAGGAGAAAGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4529#0      TTTTTTTTTTTTTTTTGCCACCCACCAACCATTTTAAACAATAACGCCAAGTCGAGACTC 60
consensus_4529#1      ------------------------------------------------------------
                                                                                  

consensus_4529#0      GAGAGTGAAAAGGCACAGAAGCACTGCTCATAACTGAAATCACTCGGGCAGTAATGCCGT 120
consensus_4529#1      ------------------------------------------------------------
                                                                                  

consensus_4529#0      TATGTCAAGTTGTCAACACCTTCAGAGTTCAAAAAGAAGGCAAAGAAAACTCACGAGCAC 180
consensus_4529#1      -------------------------------TTTTTTTTTTTTTTTTTTTTTTTTAGCAC 29
                                                                        *    *****

consensus_4529#0      AGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGT 240
consensus_4529#1      AGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGT 89
                      ************************************************************

consensus_4529#0      TGTGCCTACATTCTTATAAACGGAAAAAAAA-AAAACAGTTCTGAAGTACCACGGCTGCG 299
consensus_4529#1      TGTGCCTACATTCTTATAAACGGAAAAAAAATAAAACAGTTCTGAAGTACCACGGCTGCG 149
                      ******************************* ****************************

consensus_4529#0      CGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACA 359
consensus_4529#1      CGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACA 209
                      ************************************************************

consensus_4529#0      CGGTTACTGTATCCTCATTCTCCATTTCTCGGGGAGGCTGTATAATCCGAATCCCTGATA 419
consensus_4529#1      CGGTTACTGTATCCTCATTCTCCATTTCTCGGTGAGGCTGTATAATCCGAATCCCTGATA 269
                      ******************************** ***************************

consensus_4529#0      ATTAGGGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACT 479
consensus_4529#1      ATTAGTGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACT 329
                      ***** ******************************************************

consensus_4529#0      GCAG-GGACTATGCTTTGCAATAGGGCAGTGACTCCCGTA-GAACACCATGATCCATACA 537
consensus_4529#1      GCAGTGGACTATGCTTTGNAATAGTGCAGTGACTCCCGTAAGAACACCATGATCCATGCA 389
                      **** ************* ***** *************** **************** **

consensus_4529#0      CACCACGCGCTTTCAGTTCCGGCTCCA-CAAAGGAAAAAAAACCCTCAGGAAGTCTCAGA 596
consensus_4529#1      CACCACGCGCTTTCAGTTCCGGCTCCAACAAAGGAAAAAAAACCCTCAGGAAGNCTCAG- 448
                      *************************** ************************* ***** 

consensus_4529#0      GAGAGAGAGAAAATGGTGCTACCTTCATACTTATGGATGGTCTAACTTGAGCAGCTCACA 656
consensus_4529#1      GAGAAAGAG--------------------------------------------------- 457
                      **** ****                                                   

consensus_4529#0      CTCAAAAGAAATGGGTTTGGCGGGCCTA 684
consensus_4529#1      ----------------------------
                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)