These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 684 fasta sequence [TTTTTTTTTTTTTTTTGCCACCCACCAACCATTTTAAACAATAACGCCAAGTCGAGACTCGAGAGTGAAAAGGCACAGAAGCACTGCTCATAACTGAAATCACTCGGGCAGTAATGCCGTTATGTCAAGTTGTCAACACCTTCAGAGTTCAAAAAGAAGGCAAAGAAAACTCACGAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATAAACGGAAAAAAAA-AAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGGGAGGCTGTATAATCCGAATCCCTGATAATTAGGGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGGGACTATGCTTTGCAATAGGGCAGTGACTCCCGTAGAACACCATGATCCATACACACCACGCGCTTTCAGTTCCGGCTCC-ACAAAGGAAAAAAAACCCTCAGGAAGTCTCAGAGAGAGAGAGAAAATGGTGCTACCTTCATACTTATGGATGGTCTAACTTGAGCAGCTCACACTCAAAAGAAATGGGTTTGGCGGGCCTA] [+] EMBL CA763386 [TTTTTTTTTTTTTTTTGCCACCCACCAACCATTTTAAACAATAACGCCAAGTCGAGACTCGAGAGTGAAAAGGCACAGAAGCACTGCTCATAACTGAAATCACTCGGGCAGTAATGCCGTTATGTCAAGTTGTCAACACCTTCAGAGTTCAAAAAGAAGGCAAAGAAAACTCACGAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATAAACGGAAAAAAAA AAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGGGAGGCTGTATAATCCGAATCCCTGATAATTAGGGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGGGACTATGCTTTGCAATAGGGCAGTGACTCCCGTAGAACACCATGATCCATACACACCACGCGCTTTCAGTTCCGGCTCC ACAAAGGAAAAAAAACCCTCAGGAAGTCTCAGAGAGAGAGAGAAAATGGTGCTACCTTCATACTTATGGATGGTCTAACTTGAGCAGCTCACACTCAAAAGAAATGGGTTTGGCGGGCCTA] [+] EMBL CB636732 [ ATGCCGTTATGTTCAGTTGTCAACACCTTCAGAGTTCAGAAAGAAGGCAAAGAAAACTCACGAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATTAACGGAAAAAAAATAAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGTGAGGCTGTATAATCCGAATCCCTGATAATTAGTGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGTGACTATGCTTTGCAATAGTGCAGTGACTCCCGTAGAACACCATGATCCATGCACACCACGCGCTTTCAGTTCCGGCTCCAACAAAGGAAAAAAAACCCTCAGGAAGTCTCAAAGAAAGAGAGAAAATGTTGCTACCTTCATGCTTATGt ] consensusID : consensus_4529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATAAACGGAAAAAAAATAAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGTGAGGCTGTATAATCCGAATCCCTGATAATTAGTGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGTGGACTATGCTTTGNAATAGTGCAGTGACTCCCGTAAGAACACCATGATCCATGCACACCACGCGCTTTCAGTTCCGGCTCCAACAAAGGAAAAAAAACCCTCAGGAAGNCTCAGGAGAAAGAG] [-] EMBL C97390 [TTTTTTTTTTTTTTTTTTTTTTTTAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATAAACGGAAAAAAAATAAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGTGAGGCTGTATAATCCGAATCCCTGATAATTAGTGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGTGGACTATGCTTTGNAATAGTGCAGTGACTCCCGTAAGAACACCATGATCCATGCACACCACGCGCTTTCAGTTCCGGCTCCAACAAAGGAAAAAAAACCCTCAGGAAGNCTCAGGAGAAAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4529#0 TTTTTTTTTTTTTTTTGCCACCCACCAACCATTTTAAACAATAACGCCAAGTCGAGACTC 60 consensus_4529#1 ------------------------------------------------------------ consensus_4529#0 GAGAGTGAAAAGGCACAGAAGCACTGCTCATAACTGAAATCACTCGGGCAGTAATGCCGT 120 consensus_4529#1 ------------------------------------------------------------ consensus_4529#0 TATGTCAAGTTGTCAACACCTTCAGAGTTCAAAAAGAAGGCAAAGAAAACTCACGAGCAC 180 consensus_4529#1 -------------------------------TTTTTTTTTTTTTTTTTTTTTTTTAGCAC 29 * ***** consensus_4529#0 AGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGT 240 consensus_4529#1 AGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGT 89 ************************************************************ consensus_4529#0 TGTGCCTACATTCTTATAAACGGAAAAAAAA-AAAACAGTTCTGAAGTACCACGGCTGCG 299 consensus_4529#1 TGTGCCTACATTCTTATAAACGGAAAAAAAATAAAACAGTTCTGAAGTACCACGGCTGCG 149 ******************************* **************************** consensus_4529#0 CGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACA 359 consensus_4529#1 CGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACA 209 ************************************************************ consensus_4529#0 CGGTTACTGTATCCTCATTCTCCATTTCTCGGGGAGGCTGTATAATCCGAATCCCTGATA 419 consensus_4529#1 CGGTTACTGTATCCTCATTCTCCATTTCTCGGTGAGGCTGTATAATCCGAATCCCTGATA 269 ******************************** *************************** consensus_4529#0 ATTAGGGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACT 479 consensus_4529#1 ATTAGTGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACT 329 ***** ****************************************************** consensus_4529#0 GCAG-GGACTATGCTTTGCAATAGGGCAGTGACTCCCGTA-GAACACCATGATCCATACA 537 consensus_4529#1 GCAGTGGACTATGCTTTGNAATAGTGCAGTGACTCCCGTAAGAACACCATGATCCATGCA 389 **** ************* ***** *************** **************** ** consensus_4529#0 CACCACGCGCTTTCAGTTCCGGCTCCA-CAAAGGAAAAAAAACCCTCAGGAAGTCTCAGA 596 consensus_4529#1 CACCACGCGCTTTCAGTTCCGGCTCCAACAAAGGAAAAAAAACCCTCAGGAAGNCTCAG- 448 *************************** ************************* ***** consensus_4529#0 GAGAGAGAGAAAATGGTGCTACCTTCATACTTATGGATGGTCTAACTTGAGCAGCTCACA 656 consensus_4529#1 GAGAAAGAG--------------------------------------------------- 457 **** **** consensus_4529#0 CTCAAAAGAAATGGGTTTGGCGGGCCTA 684 consensus_4529#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||