These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4558#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2118 fasta sequence [CGTCGCTAAGAAACTCTTCCACGGCTACTTGCCTCTCTCGTCTTCCTCCCCACGCCACTCGCCACCGCGCGCGCCACTCTCTCGCGACTCCTCGCCACCGCCTTCGGACCACGAGATTCCGGCGACTTTATGGATGATGAATTCGTGGGAGTGGTACAGATCGACGGCGGCGGCGGGGACGGGGGCTGGGGCCCTGTTGGAGCAGCGGCGGGCGTCGGCGAGGTCGGCGACGGTGCCCTTCCTCCCGATGCGGTCGCGGGAGCCGGCGGAGCCGATGGAGTGGACGAGCTGCGCCAAGCAGAGGCGAGACTCCGAAAACTATGCTTGGAGTACACCGGCACGGGCAGCATGCCATGCGCCGGCTGCTATCTCCGACTCGATAAAGGAATTCCTCATAAGAAGTTTAAGCTTCTCCTCCTTAAGGGGAATGGAGCCAAGCGTCATTTCGAGACAGTGCATAAACTCGACAAGAATAAGAAAAATCGCTGCAAAAACTGCGGAAGCTACTTCCGCAGTAAAGAAGAATTGCGAGACCATAAAGACCGAATCCATCAATAAGCTCACCGAGGAGGCGCTGAGGATCTGGAAGAGCGGCTCGTACCTCCACGCCGACGAGGACGGGAGGTCCGTCTACATCGGCAGCCTCCCCCGCGCCGGCGGCGACTCGAGGCACGGAACGATGTGGGCCGTCGAGCCGCCGATCGACGCCGCGGCGCCGCTGCCGCAGTACGCGCGCCTCCGCGCCGCCTACGGCCGCTACCTCGGGACCCCCGACTCCTACGGCTCCCCGCTCCCCTTCCTCCCGGTGGACGCCGCGCAGCGCGACCGCGACAGGGTGGAGATGGACGCCATCATGTGGCAGCCCGTCGCGTGCTCCGGCTCCGACGTGGTCGGCGGTCGCGATGCCCGCGGCGTCGTCCTCCTGCGCGACAGGTACGGGCGCTACCTCCGCGGCAGCAACAATCTCCTGGCTCCCCGCCGCAGCGTCCCTGTCAAGCCCTACGTCGTGAACGAGCATATGTTTCGGTGGGAGGTGGTGCGTGTCCCCCTGAGTGAAGCCAGGCCGGAGCTCCCGATCGCCGCTCAGTCCGGCTTCGTCGCGGCGTGCTTCCCACCGCTGCTGCGAGTGATCGAGTTCGTGGGCGAAGACGACCTCGACAACATCGGCGAGGGAGAAATCTGGACTACGGTTGAGACCAGAGGGAGGTCGGTGAGGCTCCTGAAAGAGAAGATCGCGAAGCTTGTGGGCTACGAAGACTTCACGATGTGCGTCAGCGCCGGCCGCCATGGGCAGTTCACCCCTCTGCTCATGGATGCCAACTTCGAGGGCGAAGATACGTTGCTGTGGGAGGTGGTGCGCGTCCCCCCGAGTGGAGACATGCCGGGGCTCCCGATCGCCACTCAGCCCGGGTTCTTCGTCAGGGCGTGCTTCCCCCAGCCGCTGCGGGAGATCCAGTTCGTGGACGAAGCCGACCTCGACAACACCAGCGAGGGAGAAATCTGGACTACGGTTGAGATCAGAGGGAGGTCGGTGAGGCTCCTGAGAGAGAAGATCGCGGAGCTTGTGGGCTACGACGACTTCACGATGTGCGTCAGCGCCGGCCGCCATGGGCAGTTCACCCCTCTGCTCATCGACCTGCCTCGCAGCCGGGAGACCCTGAACATCGTCCTCCTCAGGACCAACAGCGAAGCGAATGATCAGATGATATTCCCGAATCCGAATGCATTGCCGTCAGCAGAGGCCACAGATGAAGACAATGCCACGATTGAGTGAATCCTTTTGTGCTGAAGTTCTGACAGGCTCAGGGAACTCGACAGAAGATTAGTGTGTTGGTATAGGGTGGAATTTTCAGTTCAGCCGATGCTGCAATGCAGTTTTATGTTTGCTATCAGCTGTAGAATGGCTGAAAACTCTGAAATTTTCAGTGTGTTCAATGGGTGTTTTTCGACGGTTTCACATACTTCGGAAACCGGTAAAACAGGGCCTTCTAAGGAAAATATTGGTTTTGGTGACAATTAGTATTCATGCCTAGTATGGATTGACGCCAAAAATGTGCTTATTCCTGAAGTATATTAGTGTTCATGCTAAACTTGGTAGAAATATGCATGATGTCTCTG] [+] EMBL AK106838 [CGTCGCTAAGAAACTCTTCCACGGCTACTTGCCTCTCTCGTCTTCCTCCCCACGCCACTCGCCACCGCGCGCGCCACTCTCTCGCGACTCCTCGCCACCGCCTTCGGACCACGAGATTCCGGCGACTTTATGGATGATGAATTCGTGGGAGTGGTACAGATCGACGGCGGCGGCGGGGACGGGGGCTGGGGCCCTGTTGGAGCAGCGGCGGGCGTCGGCGAGGTCGGCGACGGTGCCCTTCCTCCCGATGCGGTCGCGGGAGCCGGCGGAGCCGATGGAGTGGACGAGCTGCGCCAAGCAGAGGCGAGACTCCGAAAACTATGCTTGGAGTACACCGGCACGGGCAGCATGCCATGCGCCGGCTGCTATCTCCGACTCGATAAAGGAATTCCTCATAAGAAGTTTAAGCTTCTCCTCCTTAAGGGGAATGGAGCCAAGCGTCATTTCGAGACAGTGCATAAACTCGACAAGAATAAGAAAAATCGCTGCAAAAACTGCGGAAGCTACTTCCGCAGTAAAGAAGAATTGCGAGACCATAAAGACCGAATCCATCAATAAGCTCACCGAGGAGGCGCTGAGGATCTGGAAGAGCGGCTCGTACCTCCACGCCGACGAGGACGGGAGGTCCGTCTACATCGGCAGCCTCCCCCGCGCCGGCGGCGACTCGAGGCACGGAACGATGTGGGCCGTCGAGCCGCCGATCGACGCCGCGGCGCCGCTGCCGCAGTACGCGCGCCTCCGCGCCGCCTACGGCCGCTACCTCGGGACCCCCGACTCCTACGGCTCCCCGCTCCCCTTCCTCCCGGTGGACGCCGCGCAGCGCGACCGCGACAGGGTGGAGATGGACGCCATCATGTGGCAGCCCGTCGCGTGCTCCGGCTCCGACGTGGTCGGCGGTCGCGATGCCCGCGGCGTCGTCCTCCTGCGCGACAGGTACGGGCGCTACCTCCGCGGCAGCAACAATCTCCTGGCTCCCCGCCGCAGCGTCCCTGTCAAGCCCTACGTCGTGAACGAGCATATGTTTCGGTGGGAGGTGGTGCGTGTCCCCCTGAGTGAAGCCAGGCCGGAGCTCCCGATCGCCGCTCAGTCCGGCTTCGTCGCGGCGTGCTTCCCACCGCTGCTGCGAGTGATCGAGTTCGTGGGCGAAGACGACCTCGACAACATCGGCGAGGGAGAAATCTGGACTACGGTTGAGACCAGAGGGAGGTCGGTGAGGCTCCTGAAAGAGAAGATCGCGAAGCTTGTGGGCTACGAAGACTTCACGATGTGCGTCAGCGCCGGCCGCCATGGGCAGTTCACCCCTCTGCTCATGGATGCCAACTTCGAGGGCGAAGATACGTTGCTGTGGGAGGTGGTGCGCGTCCCCCCGAGTGGAGACATGCCGGGGCTCCCGATCGCCACTCAGCCCGGGTTCTTCGTCAGGGCGTGCTTCCCCCAGCCGCTGCGGGAGATCCAGTTCGTGGACGAAGCCGACCTCGACAACACCAGCGAGGGAGAAATCTGGACTACGGTTGAGATCAGAGGGAGGTCGGTGAGGCTCCTGAGAGAGAAGATCGCGGAGCTTGTGGGCTACGACGACTTCACGATGTGCGTCAGCGCCGGCCGCCATGGGCAGTTCACCCCTCTGCTCATCGACCTGCCTCGCAGCCGGGAGACCCTGAACATCGTCCTCCTCAGGACCAACAGCGAAGCGAATGATCAGATGATATTCCCGAATCCGAATGCATTGCCGTCAGCAGAGGCCACAGATGAAGACAATGCCACGATTGAGTGAATCCTTTTGTGCTGAAGTTCTGACAGGCTCAGGGAACTCGACAGAAGATTAGTGTGTTGGTATAGGGTGGAATTTTCAGTTCAGCCGATGCTGCAATGCAGTTTTATGTTTGCTATCAGCTGTAGAATGGCTGAAAACTCTGAAATTTTCAGTGTGTTCAATGGGTGTTTTTCGACGGTTTCACATACTTCGGAAACCGGTAAAACAGGGCCTTCTAAGGAAAATATTGGTTTTGGTGACAATTAGTATTCATGCCTAGTATGGATTGACGCCAAAAATGTGCTTATTCCTGAAGTATATTAGTGTTCATGCTAAACTTGGTAGAAATATGCATGATGTCTCTG] consensusID : consensus_4558#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence [CCGCCATGGGCAGTTCACCCCTTTGCTCATCGACCTGCGTCGCAGCCGGGAGACCCTGAACATCGTCCTCCTCAGGACCAACAGCGAAGCGGATAATCAGTTGATATTCCCCAATGTCAGTGAAATTGCTGTCAAATGGATCAAGGCGAACCAAGATTGATTTAGTGAATCCTTTTGTGCTGAAGTTTTGACAGGCTCAGGGAACTCGACAGAAGATTAGTGTGTTGGTTAGAGACATATTGAGTGAAATTTTTAGTTCAGCCGATTTTGGAATACAGTTTCATGTTTGCTCAGCTGTAGAGTGGCTGAAAAATCTCAAATTGTCAGGGTGTTCAATGGGTGTATTACCCCGGTTTACGTACTTTGTGAACAGGGTTTTTTGACGAAAATATTGGTCATGGTG-ACAATTAGTATTCATTCCTAGTATGGATTGATGGCAAGAATGTGCTTAACTACTGAAATATATACTGTTCAAGATAAGTGAACTTTGACGAGTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCCCTC] [-] EMBL CF326650 [CCGCCATGGGCAGTTCACCCCTTTGCTCATCGACCTGCGTCGCAGCCGGGAGACCCTGAACATCGTCCTCCTCAGGACCAACAGCGAAGCGGATAATCAGTTGATATTCCCCAATGTCAGTGAAATTGCTGTCAAATGGATCAAGGCGAACCAAGATTGATTTAGTGAATCCTTTTGTGCTGAAGTTTTGACAGGCTCAGGGAACTCGACAGAAGATTAGTGTGTTGGTTAGAGACATATTGAGTGAAATTTTTAGTTCAGCCGATTTTGGAATACAGTTTCATGTTTGCTCAGCTGTAGAGTGGCTGAAAAATCTCAAATTGTCAGGGTGTTCAATGGGTGTATTACCCCGGTTTACGTACTTTGTGAACAGGGTTTTTTGACGAAAATATTGGTCATGGTG ACAATTAGTATTCATTCCTAGTATGGATTGATGGCAAGAATGTGCTTAACTACTGAAATATATACTGTTCAAGATAAGTGAACTTTGACGAGTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCC ] [-] EMBL CF325778 [ CCCTGAACATCGTCCTCCTCAGGACCAACAGCGAAGCGGATAATCAGTTGATATTCCCAAATGTCAGTGAAATTGCTGTCAAATGGATCAAGGCGAACCAAGATTGATTTAGTGAATCCTTTTGTGCTGAAGTTTTGACAGGCTCAGGGAACTCGACAGAAGATTAGTGTGTTGGTTAGAGACATATTGAGTGAAATTTTTAGTTCAGCCGATTTTGGAATACAGTTTCATGTTTGCTCAGCTGTAGAGTGGCTGAAAAATCTCAAATTGTCAGGGTGTTCAATGGGTGTATTACCCCGGTTTACGTAAATTATGAACAGGGTTTTCTGACGAAAATATTGGTCATGGTGAACCATT GAATTCATTCCTAGTATGGATTGATGGCAAGAATGTGCTTAACTACTGAAATATATACTGTTCAAGATAAGTGAACTTTGACGAGTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4558#0 CGTCGCTAAGAAACTCTTCCACGGCTACTTGCCTCTCTCGTCTTCCTCCCCACGCCACTC 60 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 GCCACCGCGCGCGCCACTCTCTCGCGACTCCTCGCCACCGCCTTCGGACCACGAGATTCC 120 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 GGCGACTTTATGGATGATGAATTCGTGGGAGTGGTACAGATCGACGGCGGCGGCGGGGAC 180 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 GGGGGCTGGGGCCCTGTTGGAGCAGCGGCGGGCGTCGGCGAGGTCGGCGACGGTGCCCTT 240 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 CCTCCCGATGCGGTCGCGGGAGCCGGCGGAGCCGATGGAGTGGACGAGCTGCGCCAAGCA 300 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 GAGGCGAGACTCCGAAAACTATGCTTGGAGTACACCGGCACGGGCAGCATGCCATGCGCC 360 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 GGCTGCTATCTCCGACTCGATAAAGGAATTCCTCATAAGAAGTTTAAGCTTCTCCTCCTT 420 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 AAGGGGAATGGAGCCAAGCGTCATTTCGAGACAGTGCATAAACTCGACAAGAATAAGAAA 480 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 AATCGCTGCAAAAACTGCGGAAGCTACTTCCGCAGTAAAGAAGAATTGCGAGACCATAAA 540 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 GACCGAATCCATCAATAAGCTCACCGAGGAGGCGCTGAGGATCTGGAAGAGCGGCTCGTA 600 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 CCTCCACGCCGACGAGGACGGGAGGTCCGTCTACATCGGCAGCCTCCCCCGCGCCGGCGG 660 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 CGACTCGAGGCACGGAACGATGTGGGCCGTCGAGCCGCCGATCGACGCCGCGGCGCCGCT 720 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 GCCGCAGTACGCGCGCCTCCGCGCCGCCTACGGCCGCTACCTCGGGACCCCCGACTCCTA 780 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 CGGCTCCCCGCTCCCCTTCCTCCCGGTGGACGCCGCGCAGCGCGACCGCGACAGGGTGGA 840 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 GATGGACGCCATCATGTGGCAGCCCGTCGCGTGCTCCGGCTCCGACGTGGTCGGCGGTCG 900 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 CGATGCCCGCGGCGTCGTCCTCCTGCGCGACAGGTACGGGCGCTACCTCCGCGGCAGCAA 960 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 CAATCTCCTGGCTCCCCGCCGCAGCGTCCCTGTCAAGCCCTACGTCGTGAACGAGCATAT 1020 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 GTTTCGGTGGGAGGTGGTGCGTGTCCCCCTGAGTGAAGCCAGGCCGGAGCTCCCGATCGC 1080 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 CGCTCAGTCCGGCTTCGTCGCGGCGTGCTTCCCACCGCTGCTGCGAGTGATCGAGTTCGT 1140 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 GGGCGAAGACGACCTCGACAACATCGGCGAGGGAGAAATCTGGACTACGGTTGAGACCAG 1200 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 AGGGAGGTCGGTGAGGCTCCTGAAAGAGAAGATCGCGAAGCTTGTGGGCTACGAAGACTT 1260 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 CACGATGTGCGTCAGCGCCGGCCGCCATGGGCAGTTCACCCCTCTGCTCATGGATGCCAA 1320 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 CTTCGAGGGCGAAGATACGTTGCTGTGGGAGGTGGTGCGCGTCCCCCCGAGTGGAGACAT 1380 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 GCCGGGGCTCCCGATCGCCACTCAGCCCGGGTTCTTCGTCAGGGCGTGCTTCCCCCAGCC 1440 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 GCTGCGGGAGATCCAGTTCGTGGACGAAGCCGACCTCGACAACACCAGCGAGGGAGAAAT 1500 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 CTGGACTACGGTTGAGATCAGAGGGAGGTCGGTGAGGCTCCTGAGAGAGAAGATCGCGGA 1560 consensus_4558#1 ------------------------------------------------------------ consensus_4558#0 GCTTGTGGGCTACGACGACTTCACGATGTGCGTCAGCGCCGGCCGCCATGGGCAGTTCAC 1620 consensus_4558#1 ------------------------------------------CCGCCATGGGCAGTTCAC 18 ****************** consensus_4558#0 CCCTCTGCTCATCGACCTGCCTCGCAGCCGGGAGACCCTGAACATCGTCCTCCTCAGGAC 1680 consensus_4558#1 CCCTTTGCTCATCGACCTGCGTCGCAGCCGGGAGACCCTGAACATCGTCCTCCTCAGGAC 78 **** *************** *************************************** consensus_4558#0 CAACAGCGAAGCGAATGATCAGATGATATTCCCGAATCCGAATGCA-TTGCCGTCAGCAG 1739 consensus_4558#1 CAACAGCGAAGCGGATAATCAGTTGATATTCCCCAATGTCAGTGAAATTGCTGTCAA-AT 137 ************* ** ***** ********** *** * ** * **** **** * consensus_4558#0 AGGCCACAGATGAAGACAATGCCACGATTGAGTGAATCCTTTTGTGCTGAAGTTCTGACA 1799 consensus_4558#1 GGATCA-AGGCGAAC-CAAGAT--TGATTTAGTGAATCCTTTTGTGCTGAAGTTTTGACA 193 * ** ** *** *** **** ************************ ***** consensus_4558#0 GGCTCAGGGAACTCGACAGAAGATTAGTGTGTTGGT---------ATAGGGTGGAATTTT 1850 consensus_4558#1 GGCTCAGGGAACTCGACAGAAGATTAGTGTGTTGGTTAGAGACATATTGAGTGAAATTTT 253 ************************************ ** * *** ****** consensus_4558#0 CAGTTCAGCCGATGCTGCAATGCAGTTTTATGTTTGCTATCAGCTGTAGAATGGCTGAAA 1910 consensus_4558#1 TAGTTCAGCCGATTTTGGAATACAGTTTCATGTTTGCT--CAGCTGTAGAGTGGCTGAAA 311 ************ ** *** ****** ********* ********** ********* consensus_4558#0 ACTCTGAAATTTTCAGTGTGTTCAATGGGTGTTTTTCGACGGTTTCACATACTTCGGAAA 1970 consensus_4558#1 AATCTCAAATTGTCAGGGTGTTCAATGGGTGTATTACCCCGGTTT-ACGTACTTTGTGAA 370 * *** ***** **** *************** ** * ****** ** ***** * ** consensus_4558#0 CCGGTAAAACAGGGCCTTCTAAGGAAAATATTGGTTTTGGTGACAATTAGTATTCATGCC 2030 consensus_4558#1 C---------AGGGTTTTTTGACGAAAATATTGGTCATGGTGACAATTAGTATTCATTCC 421 * **** ** * * ************ ******************** ** consensus_4558#0 TAGTATGGATTGACGCCAAAAATGTGCTTA-TTCCTGAAGTATATTAGTGTTCATGCTAA 2089 consensus_4558#1 TAGTATGGATTGATGGCAAGAATGTGCTTAACTACTGAAATATAT-ACTGTTCAAGATAA 480 ************* * *** ********** * ***** ***** * ****** * *** consensus_4558#0 ACTTGGTAGAAATATGCATGATGTCTCTG------------------------------- 2118 consensus_4558#1 GT------GAACTTTGACGAGTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 534 *** * ** *** * consensus_4558#0 ---------------------- consensus_4558#1 CTCGAGACTAGTTCTCTCCCTC 556 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||