These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 501 fasta sequence [ACCACCTCGACGATGGCTGCGGCGCCGGCGAGGTCGGCGGGGGCGGCGGCGGAGAAGAGGATGGTGGATCCGCCGCGG-GTGGTCG-GGGAGTACAAGCTG-CTGGAGGAGATTGGGGTGGGCTCGTTCGCGAAGGTGTACCTCGCGACGCACCTCCGCACCGGCGATGTCGTGGCGGTGAAGGAGATCGACCCCAGGAGGATCGACGAGCGCGTCCGCGGCGGAATCCTCGAGGAGAAGGCCATCCTCTCCACCCTCTCCCACCCCAACATCCTTCGCCTCATCGACACCATCCAGGAGGAGAATCTGTACCTGATTCTGGAGTACTGCAATGGAGGCGACCTCGAGGGGTACAGGACGAAGGGCGGCGAGGACGCCCGGTTGCCGGACGCCACCGCGAGGGACTTCATGCGGCAGCTCGCGGAAGGGCTCAAGATGCTGAGGGGAAGATCAATCGTGCACCGCGACCTCAAGCCTCAGAATCTTCTGCTATCAACTAATGGT] [+] EMBL CB632289 [ACCACCTCGACGATGGCTGCGGCGCCGGCGAGGTCGGCGGGGGCGGCGGCGGAGAAGAGGATGGTGGATCCGCCGCGG GTGGTCG GGGAGTACAAGCTG CTGGAGGAGATTGGGGTGGGCTCGTTCGCGAAGGTGTACCTCGCGACGCACCTCCGCACCGGCGATGTCGTGGCGGTGAAGGAGATCGACCCCAGGAGGATCGACGAGCGCGTCCGCGGCGGAATCCTCGAGGAGAAGGCCATCCTCTCCACCCTCTCCCACCCCAACATCCTTCGCCTCATCGACACCATCCAGGAGGAGAATCTGTACCTGATTCTGGAGTACTGCAATGGAGGCGACCTCGAGGGGTACAGGACGAAGGGCGGCGAGGACGCCCGGTTGCCGGACGCCACCGCGAGGGACTTCATGCGGCAGCTCGCGGAAGGGCTCAAGATGCTGAGGGGAAGATCAATCGTGCACCGCGACCTCAAGCCTCAGAATCTTCTGCTATCAACTAATGGT] [+] EMBL CB620762 [ CCACCACGATGGCTGCGGCGCCGGCGAGGTCGGCGGGGGCGGCGGCGGAGAAGAGGATGGTGGATCCGCCGCGGAGTGGTCGTGGGAGTACAAGCTGACTGGAGGAGATTGGGGTGGGCTCGTTCGCGAAGGTGTACCTCGCGACCCACCTCCGCACCGGCGATGTCGTGGCGGTGAAGGAGATCGACCCCACGAGGATCGACGAGCGCGTCCGCGGCGGAATCCTCGAGGAGAAGGCCATCCTCTCCACCCTCTCCCACCCCAACATCCTTCGCCTCATCGGCACCATCCAGGAGGAGAATCTGTACCTGATTCTGGAGTACTGCAATGGAGGCGACCTCGAGGGGTACAGGACGAAGGGCGGCGAGGACGCCCGGTTGCCGGACGCCACCGCGAGGGACTTCATGCGGCAGCTCGCGGAAGGGCTCAAGATGCTGAGGGGAAGATCAATCGTGCACCGCGACCTCAAGCCTCAGAATCTTCTGCTATCAACTAATGGT] consensusID : consensus_4579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [ACACGCNTCGCCGACCACCATGACGATGGCTGCGGCGCCGGCAAGGTCGGCGGGGGCGGCGGCGGAGAAGAGGATGGTGGATCCNCCGCGGGTGGTCGGGGAGTACAAGCTGCTGGAGGAGATTGGGGTGGGCTCGTNCGCAAAGGTNTACCTCGCAACGNACCTCCGCACCGGCAATGTCGTGGCGGTNAAGGANATCNACCCCAGGAGGNTCGACGAGCGCTTCCGGGCGGAATCCTCGAGGAGAAGGCCATCCTCTCCACCCTTTCCCACCCCAACATCCTTCGCTTCATCGACACCATCCAGGAGGAGAATCTGTACCTAATTCTGGAGTACTTNAATGGAGGCGACCTNGAGGGGTACAGACGAAGGGCGGCGAGACGCCCGGTTTCNGACCGCACC] [+] EMBL AU162165 [ACACGCNTCGCCGACCACCATGACGATGGCTGCGGCGCCGGCAAGGTCGGCGGGGGCGGCGGCGGAGAAGAGGATGGTGGATCCNCCGCGGGTGGTCGGGGAGTACAAGCTGCTGGAGGAGATTGGGGTGGGCTCGTNCGCAAAGGTNTACCTCGCAACGNACCTCCGCACCGGCAATGTCGTGGCGGTNAAGGANATCNACCCCAGGAGGNTCGACGAGCGCTTCCGGGCGGAATCCTCGAGGAGAAGGCCATCCTCTCCACCCTTTCCCACCCCAACATCCTTCGCTTCATCGACACCATCCAGGAGGAGAATCTGTACCTAATTCTGGAGTACTTNAATGGAGGCGACCTNGAGGGGTACAGACGAAGGGCGGCGAGACGCCCGGTTTCNGACCGCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4579#0 -------------ACCACCTCGACGATGGCTGCGGCGCCGGCGAGGTCGGCGGGGGCGGC 47 consensus_4579#1 ACACGCNTCGCCGACCACCATGACGATGGCTGCGGCGCCGGCAAGGTCGGCGGGGGCGGC 60 ****** ********************* ***************** consensus_4579#0 GGCGGAGAAGAGGATGGTGGATCCGCCGCGGGTGGTCGGGGAGTACAAGCTGCTGGAGGA 107 consensus_4579#1 GGCGGAGAAGAGGATGGTGGATCCNCCGCGGGTGGTCGGGGAGTACAAGCTGCTGGAGGA 120 ************************ *********************************** consensus_4579#0 GATTGGGGTGGGCTCGTTCGCGAAGGTGTACCTCGCGACGCACCTCCGCACCGGCGATGT 167 consensus_4579#1 GATTGGGGTGGGCTCGTNCGCAAAGGTNTACCTCGCAACGNACCTCCGCACCGGCAATGT 180 ***************** *** ***** ******** *** ************** **** consensus_4579#0 CGTGGCGGTGAAGGAGATCGACCCCAGGAGGATCGACGAGCGCGTCCGCGGCGGAATCCT 227 consensus_4579#1 CGTGGCGGTNAAGGANATCNACCCCAGGAGGNTCGACGAGCGCTTCCG-GGCGGAATCCT 239 ********* ***** *** *********** *********** **** *********** consensus_4579#0 CGAGGAGAAGGCCATCCTCTCCACCCTCTCCCACCCCAACATCCTTCGCCTCATCGACAC 287 consensus_4579#1 CGAGGAGAAGGCCATCCTCTCCACCCTTTCCCACCCCAACATCCTTCGCTTCATCGACAC 299 *************************** ********************* ********** consensus_4579#0 CATCCAGGAGGAGAATCTGTACCTGATTCTGGAGTACTGCAATGGAGGCGACCTCGAGGG 347 consensus_4579#1 CATCCAGGAGGAGAATCTGTACCTAATTCTGGAGTACTTNAATGGAGGCGACCTNGAGGG 359 ************************ ************* ************** ***** consensus_4579#0 GTACAGGACGAAGGGCGGCGAGGACGCCCGGTTGCCGGACGCCACCGCGAGGGACTTCAT 407 consensus_4579#1 GTACAG-ACGAAGGGCGGCGAG-ACGCCCGGTT-TCNGACCGCACC-------------- 402 ****** *************** ********** * *** **** consensus_4579#0 GCGGCAGCTCGCGGAAGGGCTCAAGATGCTGAGGGGAAGATCAATCGTGCACCGCGACCT 467 consensus_4579#1 ------------------------------------------------------------ consensus_4579#0 CAAGCCTCAGAATCTTCTGCTATCAACTAATGGT 501 consensus_4579#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||