These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [GGAAGAANAANCCCNNAANNNTTATNNANCCCNCCNGNNGGNCNNCCAAGGAAGNNATNCCNTANCANAANNGGNCNCGCNNTCGTCAANCGNNCGGGCACGTTCCTAAAGATGGCTAATGANCGNTGCGCNCGAANTCTCGGCGGTNCGNAGCGAGCGTNCCNGCNTCCGGATCCGAGCGNCNGGNNNNNNNCCNNNCCNNGCTTCACCGCTCGACGGTNACGACGACGACGTTGCCGGCTCCGACGATGACGACGATACGTTGCCACAGCAGGGCGGCAGCGAGCGGGTTGGCGCGCGAGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGGTTCCGTGCGGGCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCCTGCCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATNCNATTGGCTGGAGACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003554 [GGAAGAANAANCCCNNAANNNTTATNNANCCCNCCNGNNGGNCNNCCAAGGAAGNNATNCCNTANCANAANNGGNCNCGCNNTCGTCAANCGNNCGGGCACGTTCCTAAAGATGGCTAATGANCGNTGCGCNCGAANTCTCGGCGGTNCGNAGCGAGCGTNCCNGCNTCCGGATCCGAGCGNCNGGNNNNNNNCCNNNCCNNGCTTCACCGCTCGACGGTNACGACGACGACGTTGCCGGCTCCGACGATGACGACGATACGTTGCCACAGCAGGGCGGCAGCGAGCGGGTTGGCGCGCGAGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGGTTCCGTGCGGGCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCCTGCCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATNCNATTGGCTGGAGACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_4582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 491 fasta sequence [GCGGGAAAACGGAAAACGGGNCNAAGCCCNNTAACAAAGAAACNCGGANANGNNNCGGCGGCAGGCANACNGGNCGCGCTCCTCAAGCATGGNTAGATGGCCGGCGCGCACGAAATCGCGGCGGTCGAAACNAAGCGTCCGGCGACCGGATCCGGCGGNGGGAGNCCNCTTCCGCCCTCCCCCGCTCGACGGTGACGACGACGACGTTGCCGGCTCCGACGATGACG-ACGATACGTTGCCACAGC-AGGGCGGCAGCGAGCGGGTTGGCGCGCGAGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGGTTCCGTGCGGNCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCCTGCCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATACGATTGGCTGGAGACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003620 [GCGGGAAAACGGAAAACGGGNCNAAGCCCNNTAACAAAGAAACNCGGANANGNNNCGGCGGCAGGCANACNGGNCGCGCTCCTCAAGCATGGNTAGATGGCCGGCGCGCACGAAATCGCGGCGGTCGAAACNAAGCGTCCGGCGACCGGATCCGGCGGNGGGAGNCCNCTTCCGCCCTCCCCCGCTCGACGGTGACGACGACGACGTTGCCGGCTCCGACGATGACG ACGATACGTTGCCACAGC AGGGCGGCAGCGAGCGGGTTGGCGCGCGAGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGGTTCCGTGCGGNCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCCTGCCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATACGATTGGCTGGAGACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003743 [ ttCCGGGTNCGACGATGACGCCCGANNCGTTGCCCCANCAAGGGCGGCAGCGANCGGGTTGGCGCGCGAGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGGTTCCGTGCGGGCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCCTGCCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATACGATTGGCTGGAGACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4582#0 GGAAGAANAANCCCNNAANNNTTATNNANCCCNCCNGNNGGNCNNCCAAGGAAGNNATNC 60 consensus_4582#1 ---------------GCGGGAAAACGGAAAACGGGNCNAAGCCCNNTAACAAAGAAAC-- 43 * * * * * * * * ** *** * consensus_4582#0 CNTANCANAANNGGNCNCGCNNTCGTCAANCGNNCGGGCACGTTCCTAAAG-ATGGCTA- 118 consensus_4582#1 ----NCGGANANGNNNCGGCGGCAGGCANACNG---GNCGCGCTCCTCAAGCATGGNTAG 96 ** * ** * ** * ** * * * ** **** *** **** ** consensus_4582#0 ATGANCGNTGCGCNCGAANTCTCGGCGGTNCGNAGCGAGCGTNCCNGCNTCCGGATCCGA 178 consensus_4582#1 ATGGCCGGCGCGCACGAAATCGCGGCGGTCGAAACNAAGCGTCC-GGCGACCGGATCCG- 154 *** ** **** **** ** ******* * ***** * ** ********* consensus_4582#0 GCGNCNGGNNNNNNNCCNNNCCNNGCTTCACCGCTCGACGGTNACGACGACGACGTTGCC 238 consensus_4582#1 ---GCGGNGGGAGNCCNCTTCCGCCCTCCCCCGCTCGACGGTGACGACGACGACGTTGCC 211 * * * * ** ** * ************ ***************** consensus_4582#0 GGCTCCGACGATGACGACGATACGTTGCCACAGCAGGGCGGCAGCGAGCGGGTTGGCGCG 298 consensus_4582#1 GGCTCCGACGATGACGACGATACGTTGCCACAGCAGGGCGGCAGCGAGCGGGTTGGCGCG 271 ************************************************************ consensus_4582#0 CGAGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGG 358 consensus_4582#1 CGAGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGG 331 ************************************************************ consensus_4582#0 TTCCGTGCGGGCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCC 418 consensus_4582#1 TTCCGTGCGGNCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCC 391 ********** ************************************************* consensus_4582#0 TGCCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATNCNATTGGCTGG 478 consensus_4582#1 TGCCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATACGATTGGCTGG 451 ************************************************ * ********* consensus_4582#0 AGACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAAA 518 consensus_4582#1 AGACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAAA 491 **************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||