These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1206 fasta sequence [AGCTTAAGCTTATTAGCTCCTGAGAGTGAAGCCCCTATAGCTGATCGAAGCTATGAAGAAGATGTGGCGCGCCAACGCGAGAGTGGTGGAAAGGAGAGGTGGTCGCGAGGCCGAGGAGAGAGGGGGAGTAATTAGCGTGGTGCTTGCCCATGGCTATGGCGCGAGCCAGGCGGTGTGGGACAAGCTCGTGCCCTCCCTCTCCAAGGGCCACAACCTCCTCCTCTTCGACTGGGACTTCACCGGCGCAGGCGCCGGGAAGGACGACGACGAGTACACTTACGGCAGGTTCGCCGACGAGCTCATCGCGGTGATGGAGGAGCGGGGCGTGGGCGCGTCGGGCGCGGTGGTGGTGGCGCACTCCATGTCCGCCATGGCCGCCTGCATCGCCGCCCAACGGAGACCCGACCTCTTCGCCCACATCTTCCTCGTCTGCGCCTCCCCGAGGTACATAAACTTGGAGGAGGAAGGGTATGTAGGAGGCTTTGAGGAGGCGGCGATCCACGGCATGCTGGCAGCCATGGAGTCGGACTTCGACGGCTGGGTCAGGAGCTTCCTCCCCAACGCCGCCGGCTACGCGTCCGCCGTGGAGCACCTCCTCAAGAGCTTCCTCGCCATGGACCCGACCGTCGCGCTCAAGCTGGCCAAGATGATCTTCCTCGGCGACCAGCGGGAGGTCCTCGACGGCGTGAAGACGCCGTGCACCATCGTCCAGGTGAAGGCCGACTTCGCGGCGCCGCCCAGCGTGGCGGAGTACATGCACCTCAGGATGAAGGGCGCCGCCACGGCCGTCGAGATCATCGGCTCCGTCGGGCACTTCCCCCAGCTCGTCGCGCCGCAGCAGCTGCTGGACATACTCGCCGGCGTCCTGCGCCTCCGGGAGGCGGCGGCGGAGGCGGAGCACGACGACGCCGGCACCGTGGAGATTGCCGGTGGCATCGATGTTGCCATATAGGTTGTGCATCATGCATGCATGCTTGTAAAAAGTCTGCACATATATGCGTCAGAGCTAGCTGCATGTGTGCTCCCTTGTATGTATGTTTGTTTGTTTTGTTTTCAGAGCATGCATTAGTTGTACTATTATGTTTTCCTGTGTAAACATATCATAGAGGTTATGTTACTTGTACACCTGCATGCATGGTTTGGGTATGCTGATGGATGTAAGTACCATTTTCAATGGGACATATACCTTATTTAAAATGTGTTTAA] [+] EMBL AK067788 [AGCTTAAGCTTATTAGCTCCTGAGAGTGAAGCCCCTATAGCTGATCGAAGCTATGAAGAAGATGTGGCGCGCCAACGCGAGAGTGGTGGAAAGGAGAGGTGGTCGCGAGGCCGAGGAGAGAGGGGGAGTAATTAGCGTGGTGCTTGCCCATGGCTATGGCGCGAGCCAGGCGGTGTGGGACAAGCTCGTGCCCTCCCTCTCCAAGGGCCACAACCTCCTCCTCTTCGACTGGGACTTCACCGGCGCAGGCGCCGGGAAGGACGACGACGAGTACACTTACGGCAGGTTCGCCGACGAGCTCATCGCGGTGATGGAGGAGCGGGGCGTGGGCGCGTCGGGCGCGGTGGTGGTGGCGCACTCCATGTCCGCCATGGCCGCCTGCATCGCCGCCCAACGGAGACCCGACCTCTTCGCCCACATCTTCCTCGTCTGCGCCTCCCCGAGGTACATAAACTTGGAGGAGGAAGGGTATGTAGGAGGCTTTGAGGAGGCGGCGATCCACGGCATGCTGGCAGCCATGGAGTCGGACTTCGACGGCTGGGTCAGGAGCTTCCTCCCCAACGCCGCCGGCTACGCGTCCGCCGTGGAGCACCTCCTCAAGAGCTTCCTCGCCATGGACCCGACCGTCGCGCTCAAGCTGGCCAAGATGATCTTCCTCGGCGACCAGCGGGAGGTCCTCGACGGCGTGAAGACGCCGTGCACCATCGTCCAGGTGAAGGCCGACTTCGCGGCGCCGCCCAGCGTGGCGGAGTACATGCACCTCAGGATGAAGGGCGCCGCCACGGCCGTCGAGATCATCGGCTCCGTCGGGCACTTCCCCCAGCTCGTCGCGCCGCAGCAGCTGCTGGACATACTCGCCGGCGTCCTGCGCCTCCGGGAGGCGGCGGCGGAGGCGGAGCACGACGACGCCGGCACCGTGGAGATTGCCGGTGGCATCGATGTTGCCATATAGGTTGTGCATCATGCATGCATGCTTGTAAAAAGTCTGCACATATATGCGTCAGAGCTAGCTGCATGTGTGCTCCCTTGTATGTATGTTTGTTTGTTTTGTTTTCAGAGCATGCATTAGTTGTACTATTATGTTTTCCTGTGTAAACATATCATAGAGGTTATGTTACTTGTACACCTGCATGCATGGTTTGGGTATGCTGATGGATGTAAGTACCATTTTCAATGGGACAT ] [+] EMBL BU667354 [ ATGCATGCTTGTAAAAAGTCTGCACATATATGCGTCAGAGCTAGCTGCATGTGTGCTCCCTTGTATGTATGTTTGTTTGTTTTGTTTTCAGA CATGCATTAGTTGTACTATTATGTTTTCCTGTGTAAACATATCATAGAGGTTATGTTACTTGTACACCTGCATGCATGGTTTGGGTATGCTGATGGATGTAAGTACCATTTTC ATGGGACATATACCTTATTTAAAATGTGTTTAA] consensusID : consensus_4618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence [GCTAGTATGGTTTCCCGGGGATAACATATCATAGAGGTTATGGTACTTGGACACCCCGCACTGCATGGTTTGGGTATGCTGATGGATGTAAGTACCCTTTTCCATGGGACATATCCCCTATTTTAAATGTGGTTTTATTTTCCTGGGGCTGTTAAAAAAAAAA] [+] EMBL BI812964 [GCTAGTATGGTTTCCCGGGGATAACATATCATAGAGGTTATGGTACTTGGACACCCCGCACTGCATGGTTTGGGTATGCTGATGGATGTAAGTACCCTTTTCCATGGGACATATCCCCTATTTTAAATGTGGTTTTATTTTCCTGGGGCTGTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4618#0 AGCTTAAGCTTATTAGCTCCTGAGAGTGAAGCCCCTATAGCTGATCGAAGCTATGAAGAA 60 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 GATGTGGCGCGCCAACGCGAGAGTGGTGGAAAGGAGAGGTGGTCGCGAGGCCGAGGAGAG 120 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 AGGGGGAGTAATTAGCGTGGTGCTTGCCCATGGCTATGGCGCGAGCCAGGCGGTGTGGGA 180 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 CAAGCTCGTGCCCTCCCTCTCCAAGGGCCACAACCTCCTCCTCTTCGACTGGGACTTCAC 240 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 CGGCGCAGGCGCCGGGAAGGACGACGACGAGTACACTTACGGCAGGTTCGCCGACGAGCT 300 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 CATCGCGGTGATGGAGGAGCGGGGCGTGGGCGCGTCGGGCGCGGTGGTGGTGGCGCACTC 360 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 CATGTCCGCCATGGCCGCCTGCATCGCCGCCCAACGGAGACCCGACCTCTTCGCCCACAT 420 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 CTTCCTCGTCTGCGCCTCCCCGAGGTACATAAACTTGGAGGAGGAAGGGTATGTAGGAGG 480 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 CTTTGAGGAGGCGGCGATCCACGGCATGCTGGCAGCCATGGAGTCGGACTTCGACGGCTG 540 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 GGTCAGGAGCTTCCTCCCCAACGCCGCCGGCTACGCGTCCGCCGTGGAGCACCTCCTCAA 600 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 GAGCTTCCTCGCCATGGACCCGACCGTCGCGCTCAAGCTGGCCAAGATGATCTTCCTCGG 660 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 CGACCAGCGGGAGGTCCTCGACGGCGTGAAGACGCCGTGCACCATCGTCCAGGTGAAGGC 720 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 CGACTTCGCGGCGCCGCCCAGCGTGGCGGAGTACATGCACCTCAGGATGAAGGGCGCCGC 780 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 CACGGCCGTCGAGATCATCGGCTCCGTCGGGCACTTCCCCCAGCTCGTCGCGCCGCAGCA 840 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 GCTGCTGGACATACTCGCCGGCGTCCTGCGCCTCCGGGAGGCGGCGGCGGAGGCGGAGCA 900 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 CGACGACGCCGGCACCGTGGAGATTGCCGGTGGCATCGATGTTGCCATATAGGTTGTGCA 960 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 TCATGCATGCATGCTTGTAAAAAGTCTGCACATATATGCGTCAGAGCTAGCTGCATGTGT 1020 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 GCTCCCTTGTATGTATGTTTGTTTGTTTTGTTTTCAGAGCATGCATTAGTTGTACTATTA 1080 consensus_4618#1 -----------------------------------------------------GCTAGTA 7 *** ** consensus_4618#0 TGTTTTCCTGTGTA-AACATATCATAGAGGTTATGTTACTTGTACACCT-GCA-TGCATG 1137 consensus_4618#1 TGGTTTCCCGGGGATAACATATCATAGAGGTTATGGTACTTGGACACCCCGCACTGCATG 67 ** ***** * * * ******************** ****** ***** *** ****** consensus_4618#0 GTTTGGGTATGCTGATGGATGTAAGTACCATTTTCAATGGGACATATACCTTATTTAAAA 1197 consensus_4618#1 GTTTGGGTATGCTGATGGATGTAAGTACCCTTTTCCATGGGACATATCCCCTATTTTAAA 127 ***************************** ***** *********** ** ***** *** consensus_4618#0 TGTG-TTTAA-------------------------- 1206 consensus_4618#1 TGTGGTTTTATTTTCCTGGGGCTGTTAAAAAAAAAA 163 **** *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||