These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1306 fasta sequence [GGCGCATGCAGCGGCAGAAGCAGCCACAGCCGTCACATATCGTACGCCCATCCCTGACCCCAAATCTTGGTCCCTTGGATACTACTACTACCACCAGAAACGTCGACGAGAGAAGGGAAGCTAAGCTAGGAGAAATGGCTGCCACAGCCATGCAATGCAGGGGAGGTGAGCGCAGCGAGGACGGCGGTGGCGGTGGCATGAGGACAGTGGAGTGCCTGAGAGGGAGGCTGCTTGCAGAGAGGGTAGCATCCAAGGCTGCCAAGGAGGAGGCTGATTCACTCGCCAAAAGGCTGGATGAGCTGGAGAAGAAGCTCTCCGACGAGGTCAAGATCAGGAACAAGGCGGAGAGGAGGCTCAGGAGGGCCATAAAGAAGCTGGAGTCCCTCAAGATTTTGGATGTGGAGCTCTCGGACAGCTCCATCGGGTCACTCTCCTCCAATAGCTGCTCCGGTCACCGCGCGCCGGAGACGGAGGCGGACGTGAACAATCCTGGCTCCTCGGCTGGTTCATGCACTCAGGTGAACTCCTCCCAGGAAGGGAGCTGGTGCTCTGTTGTGTCCGAGCAATCACCATCTGTTCA-TTGCAAGGAGGAGGAGGAGAATGGCTTGGACCCTGAAGATGCTAAGAACTGCGGCTCTGGGG--AGGAGGCT-GGTGACCA-TGACTCAGAGAGAACACATGGAACGCTCCCATGTAGCAGGGATGATGAACCTGTTCATGTGCCATCCGACTTCGGCTCATCAAAATCCCAAGATAACCAACGCGACGAGGACGACGACAGGCTAGCGCTGGTGCTGGTAGACCCGCAGCCGAATGCAGAAACAGGCAACGAAGACTATATGCGTATCGATATCCAAGCACGGAAGGCTCAGGCCGAGCCCAGAGAGGGAGACGGCGAAATGGAGGAGGCGAATGAGCTCGCGATCGTGCTCGCGGACCCGCAACCCGAGCCCAAGGCGGAGCCTGCGGCGACGGCGAGGCCGCGCAACGACGTGCAGTCCGTGCTCCTCGCGCTGCGGCAGGTGAAGGAGCAGCTGCGGTACACGATCGAGAGGAGGTCGGAGCTCGTCGCCCACCAGGAGCTTTGCGGCCACTGTTGAGAGCGCTGCACCTCGTCAGTTTTGAGCAGCGGCTCTTGCTAGTATTTGCCACGATACTACTAGAGTTCTTGACAGTGATAGTGTAGTAGAGTATTTGTAGAGAAATTGGAATAAGATTTTGCTCCCGTGGCTGTGTTACATACACGGGAGACAAACTGAGATAATTCAGTTGTGTACAATTTGTTCTCCATCTGTCAATGTTATATATG] [+] EMBL AK064670 [GGCGCATGCAGCGGCAGAAGCAGCCACAGCCGTCACATATCGTACGCCCATCCCTGACCCCAAATCTTGGTCCCTTGGATACTACTACTACCACCAGAAACGTCGACGAGAGAAGGGAAGCTAAGCTAGGAGAAATGGCTGCCACAGCCATGCAATGCAGGGGAGGTGAGCGCAGCGAGGACGGCGGTGGCGGTGGCATGAGGACAGTGGAGTGCCTGAGAGGGAGGCTGCTTGCAGAGAGGGTAGCATCCAAGGCTGCCAAGGAGGAGGCTGATTCACTCGCCAAAAGGCTGGATGAGCTGGAGAAGAAGCTCTCCGACGAGGTCAAGATCAGGAACAAGGCGGAGAGGAGGCTCAGGAGGGCCATAAAGAAGCTGGAGTCCCTCAAGATTTTGGATGTGGAGCTCTCGGACAGCTCCATCGGGTCACTCTCCTCCAATAGCTGCTCCGGTCACCGCGCGCCGGAGACGGAGGCGGACGTGAACAATCCTGGCTCCTCGGCTGGTTCATGCACTCAGGTGAACTCCTCCCAGGAAGGGAGCTGGTGCTCTGTTGTGTCCGAGCAATCACCATCTGTTCA TTGCAAGGAGGAGGAGGAGAATGGCTTGGACCCTGAAGATGCTAAGAACTGCGGCTCTGGGG AGGAGGCT GGTGACCA TGACTCAGAGAGAACACATGGAACGCTCCCATGTAGCAGGGATGATGAACCTGTTCATGTGCCATCCGACTTCGGCTCATCAAAATCCCAAGATAACCAACGCGACGAGGACGACGACAGGCTAGCGCTGGTGCTGGTAGACCCGCAGCCGAATGCAGAAACAGGCAACGAAGACTATATGCGTATCGATATCCAAGCACGGAAGGCTCAGGCCGAGCCCAGAGAGGGAGACGGCGAAATGGAGGAGGCGAATGAGCTCGCGATCGTGCTCGCGGACCCGCAACCCGAGCCCAAGGCGGAGCCTGCGGCGACGGCGAGGCCGCGCAACGACGTGCAGTCCGTGCTCCTCGCGCTGCGGCAGGTGAAGGAGCAGCTGCGGTACACGATCGAGAGGAGGTCGGAGCTCGTCGCCCACCAGGAGCTTTGCGGCCACTGTTGAGAGCGCTGCACCTCGTCAGTTTTGAGCAGCGGCTCTTGCTAGTATTTGCCACGATACTACTAGAGTTCTTGACAGTGATAGTGTAGTAGAGTATTTGTAGAGAAATTGGAATAAGATTTTGCTCCCGTGGCTGTGTTACATACACGGGAGACAAACTGAGATAATTCAGTTGTGTACAATTTGTTCTCCATCTGTCAATGTTATATATG] [+] EMBL C72413 [ caGCTGGATGAGCTGGAGAAGAAGCTCTCCGACGAGGTCAAGATCAGGAACAAGGCGGAGAGGAGGCTCAGGAGGGCCATAAAGAAGCTGGAGTCCCTCAAGATTTTGGATGTGGAGCTCTCGGACAGCTCCATCGGGTCACTCTCCTCCAATAGCTGCTCCGGTCACCGCGCGCCGGAGACGGAGGCGTACGTGAACAATCCTGGCTCCTCGGCTGGTTCATGCACTCAGGTGAACTCCTCCCAGGAAGGGAGCTGGTGCTCTGTTGTGTCCGAGCAATCACCATCTGTTCATTTGCAAGGAGGAGGAGGAGAATGGCTTGGACCCTGAAGATGCTAAGAACTGCGGCTCTGGGGGAANGAGGCTGGGTNACCATTGACTCAGAGA ] consensusID : consensus_4621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [GCACCCCAAGCCCAAAAGCAGAGGCGCATGCAGCGGCAGAAGCAGCCACAGCCGTCACATATCGTACGCCCATCCCTGACCCCAAATCTTGGTCCCTTGGATACTACTACTACCACCAGAAACGTCGACGAGAGAAGGGAAGCTAAGCTAGGAGAAATGGCTGCCACAGCCATGCAATGCAGGGGAGGTGAGCGCAGTGNGNACGGCGGTGGCGGTGGCATGAGGACAGTGGAGTGCCTNANAGGGAGGCTGCTTGCAGAGAGGGTAGCATCCAAGGCTGCCAAGGAGGAGGCTGATTCACTCGCCAAAAGGTTGGATGAGTTGGAGAAGAAGCTNTTCCGACGGGGTCAAGGTCAGGGACAAGGCGGAGGAGGNGGGTTCAAGAGGGGCCATTAAAGAAGCTTGGAGTCCCTCAAGATTTTTGGTTTTGGGCTNTTGGACAAGTTCATCGGGTAATTTTCCTCCAAT] [+] EMBL OSS14551A [GCACCCCAAGCCCAAAAGCAGAGGCGCATGCAGCGGCAGAAGCAGCCACAGCCGTCACATATCGTACGCCCATCCCTGACCCCAAATCTTGGTCCCTTGGATACTACTACTACCACCAGAAACGTCGACGAGAGAAGGGAAGCTAAGCTAGGAGAAATGGCTGCCACAGCCATGCAATGCAGGGGAGGTGAGCGCAGTGNGNACGGCGGTGGCGGTGGCATGAGGACAGTGGAGTGCCTNANAGGGAGGCTGCTTGCAGAGAGGGTAGCATCCAAGGCTGCCAAGGAGGAGGCTGATTCACTCGCCAAAAGGTTGGATGAGTTGGAGAAGAAGCTNTTCCGACGGGGTCAAGGTCAGGGACAAGGCGGAGGAGGNGGGTTCAAGAGGGGCCATTAAAGAAGCTTGGAGTCCCTCAAGATTTTTGGTTTTGGGCTNTTGGACAAGTTCATCGGGTAATTTTCCTCCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4621#0 ----------------------GGCGCATGCAGCGGCAGAAGCAGCCACAGCCGTCACAT 38 consensus_4621#1 GCACCCCAAGCCCAAAAGCAGAGGCGCATGCAGCGGCAGAAGCAGCCACAGCCGTCACAT 60 ************************************** consensus_4621#0 ATCGTACGCCCATCCCTGACCCCAAATCTTGGTCCCTTGGATACTACTACTACCACCAGA 98 consensus_4621#1 ATCGTACGCCCATCCCTGACCCCAAATCTTGGTCCCTTGGATACTACTACTACCACCAGA 120 ************************************************************ consensus_4621#0 AACGTCGACGAGAGAAGGGAAGCTAAGCTAGGAGAAATGGCTGCCACAGCCATGCAATGC 158 consensus_4621#1 AACGTCGACGAGAGAAGGGAAGCTAAGCTAGGAGAAATGGCTGCCACAGCCATGCAATGC 180 ************************************************************ consensus_4621#0 AGGGGAGGTGAGCGCAGCGAGGACGGCGGTGGCGGTGGCATGAGGACAGTGGAGTGCCTG 218 consensus_4621#1 AGGGGAGGTGAGCGCAGTGNGNACGGCGGTGGCGGTGGCATGAGGACAGTGGAGTGCCTN 240 ***************** * * ************************************* consensus_4621#0 AGAGGGAGGCTGCTTGCAGAGAGGGTAGCATCCAAGGCTGCCAAGGAGGAGGCTGATTCA 278 consensus_4621#1 ANAGGGAGGCTGCTTGCAGAGAGGGTAGCATCCAAGGCTGCCAAGGAGGAGGCTGATTCA 300 * ********************************************************** consensus_4621#0 CTCGCCAAAAGGCTGGATGAGCTGGAGAAGAAGCTCT-CCGACGAGGTCAAGATCAGGAA 337 consensus_4621#1 CTCGCCAAAAGGTTGGATGAGTTGGAGAAGAAGCTNTTCCGACGGGGTCAAGGTCAGGGA 360 ************ ******** ************* * ****** ******* ***** * consensus_4621#0 CAAGGCGGAGA--GGAGGCTCAGGAGGG-CCAT-AAAGAAGCT-GGAGTCCCTCAAGATT 392 consensus_4621#1 CAAGGCGGAGGAGGNGGGTTCAAGAGGGGCCATTAAAGAAGCTTGGAGTCCCTCAAGATT 420 ********** * ** *** ***** **** ********* **************** consensus_4621#0 TTGGATGTGGAGCTCTCGGACAGCTCCATCGGGTCACTCTCCTCCAATAGCTGCTCCGGT 452 consensus_4621#1 TTTGGTTTTGGGCTNTTGGACAAGTTCATCGGGTAATTTTCCTCCAAT------------ 468 ** * * * * *** * ***** * ******** * * ********* consensus_4621#0 CACCGCGCGCCGGAGACGGAGGCGGACGTGAACAATCCTGGCTCCTCGGCTGGTTCATGC 512 consensus_4621#1 ------------------------------------------------------------ consensus_4621#0 ACTCAGGTGAACTCCTCCCAGGAAGGGAGCTGGTGCTCTGTTGTGTCCGAGCAATCACCA 572 consensus_4621#1 ------------------------------------------------------------ consensus_4621#0 TCTGTTCATTGCAAGGAGGAGGAGGAGAATGGCTTGGACCCTGAAGATGCTAAGAACTGC 632 consensus_4621#1 ------------------------------------------------------------ consensus_4621#0 GGCTCTGGGGAGGAGGCTGGTGACCATGACTCAGAGAGAACACATGGAACGCTCCCATGT 692 consensus_4621#1 ------------------------------------------------------------ consensus_4621#0 AGCAGGGATGATGAACCTGTTCATGTGCCATCCGACTTCGGCTCATCAAAATCCCAAGAT 752 consensus_4621#1 ------------------------------------------------------------ consensus_4621#0 AACCAACGCGACGAGGACGACGACAGGCTAGCGCTGGTGCTGGTAGACCCGCAGCCGAAT 812 consensus_4621#1 ------------------------------------------------------------ consensus_4621#0 GCAGAAACAGGCAACGAAGACTATATGCGTATCGATATCCAAGCACGGAAGGCTCAGGCC 872 consensus_4621#1 ------------------------------------------------------------ consensus_4621#0 GAGCCCAGAGAGGGAGACGGCGAAATGGAGGAGGCGAATGAGCTCGCGATCGTGCTCGCG 932 consensus_4621#1 ------------------------------------------------------------ consensus_4621#0 GACCCGCAACCCGAGCCCAAGGCGGAGCCTGCGGCGACGGCGAGGCCGCGCAACGACGTG 992 consensus_4621#1 ------------------------------------------------------------ consensus_4621#0 CAGTCCGTGCTCCTCGCGCTGCGGCAGGTGAAGGAGCAGCTGCGGTACACGATCGAGAGG 1052 consensus_4621#1 ------------------------------------------------------------ consensus_4621#0 AGGTCGGAGCTCGTCGCCCACCAGGAGCTTTGCGGCCACTGTTGAGAGCGCTGCACCTCG 1112 consensus_4621#1 ------------------------------------------------------------ consensus_4621#0 TCAGTTTTGAGCAGCGGCTCTTGCTAGTATTTGCCACGATACTACTAGAGTTCTTGACAG 1172 consensus_4621#1 ------------------------------------------------------------ consensus_4621#0 TGATAGTGTAGTAGAGTATTTGTAGAGAAATTGGAATAAGATTTTGCTCCCGTGGCTGTG 1232 consensus_4621#1 ------------------------------------------------------------ consensus_4621#0 TTACATACACGGGAGACAAACTGAGATAATTCAGTTGTGTACAATTTGTTCTCCATCTGT 1292 consensus_4621#1 ------------------------------------------------------------ consensus_4621#0 CAATGTTATATATG 1306 consensus_4621#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||