Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4633 cluster # 4633       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4633#0 length = 1597 sequences # 3  

consensusID : consensus_4633#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1597
fasta sequence
                              [CCTGTTCTTTCCTTCCTCCTCTTCTCGTGGGCCTTCTTCTCTCTCCCCCTCCCCGTGGCGCTGACGCGACGCGCTCTCCTCCGGCGAGGTCTCTGACTCTCCAGCGCTGCGCGGCGCCGTATCGCCGGCCGCGAACTCGAGGCTGGGCTGGGCGGGCGTATCGTTCCTGCTCCCGGAGAAGACTGTTATGATGATTTGAACTACTGCTTGGTATTACAATGGAGAACCTTGAATGCACAGTTGGGAAAGATGGCTTAAATTTTCAGTGCAACCTGTGTGATTCAGATGTAGTGCATTCCATGGCAGAAATCCTGCTTCGTGGATTGGCAACTGCCTCAGTTGACAGCACTACTGGTGATATCTTCAAGAGCCCATCTTCTGTAGCTGTTGGAATGAAGAGCGAGCTAGCAGAATATTTGATTCAGGGGTCCATGACGCTTGTTCGTGAGGCTGTCGACGGAGGCGAGGATCACTCAGAACAATTAATAAAAGCATCCACCATGCCGACGGAGTTCCTCTCAGACTTGATCGAT-GGTTTTGTAGCATCAAAACGGAACTTGTTGAGCCATGTGTCTGGG--TTTTTGTCTAGCGAAACCCGCTTGAACAAAATTAAAGACTTCATACAGAAGCTGGAGATGGAGAACTTCTGGGCACCAGATGTTAGAGAGGCTACTGCAGGGACTATTCTTAAGAGTATAGACATGAAATGCATTATCCATTGCCCTGAGAGATTTGACACACAAGATAAGCTGGCTGAACACAGGAATCTGTGTAGATTTAGGATAGTAAACTGCAAAAATGATGGATGTTTAGCTTCCTTTTCTGCTAATCACATTGAGAAGCATGACTCTGTCTGCCCATTCAAAGTCCTACCATGTGAGCAGTTGTGCGAGCAGCATGTTATGCGGTGTGAGATGGACAGGCATTGTGCATCAGTTTGCCCTATGAAGCTTATTAACTGCCCTTTTTACCAGGTTGGCTGTGAATCAGCCTTTCCGCAGTGTGTTCTTGATAAGCATTGTTCAGAGCGCCTTCAAATCCATCTGATGTATATTCTTGAGCTAACTACAAGACATGATGCTTTTGTTAATGATATGAATCAACGATTACACCTCCTTGAGAAGGCCCAGTCACTGAATGAACTCTCTGGGGCTTTAGATAACAGAA-CCCTCACTCTAACAGCAAAGGAGCAAGAAGCAAAGATCAAGAAACTCGAACAGGATCTCAAAGTGCAAGAGACAAAGCTGGAGAAACTTGAAAGCGAGTTTAAGTCAGGGAAAGTGTGAATACATCCTTCGGCCATCCCGGCTAAAAAGAAGTGTGAATGCGTGATGTTGTGATTATAGTGTTACTGTAAAAAACCAGGGCGTCATACTTTAGTAGCTGTAAATAATAATTAGCACCTCCTTACAGTTTACCATACTTCTGTGTGTTGTTCATGTACGATAAGAAAATAAGGTTTAGAAAAGTCAGCTTCTCTTGAATTCTTTTGTTAGTTTGAAGTAACAGTGTTTGATCTTTTCTGTATCATGCAGTAAGTACATATATATTGTGGAGATGAAGTTCATTTGGATCATCTGCCATCTTCTTCAAAAAA]

[+] EMBL AK067496             [CCTGTTCTTTCCTTCCTCCTCTTCTCGTGGGCCTTCTTCTCTCTCCCCCTCCCCGTGGCGCTGACGCGACGCGCTCTCCTCCGGCGAGGTCTCTGACTCTCCAGCGCTGCGCGGCGCCGTATCGCCGGCCGCGAACTCGAGGCTGGGCTGGGCGGGCGTATCGTTCCTGCTCCCGGAGAAGACTGTTATGATGATTTGAACTACTGCTTGGTATTACAATGGAGAACCTTGAATGCACAGTTGGGAAAGATGGCTTAAATTTTCAGTGCAACCTGTGTGATTCAGATGTAGTGCATTCCATGGCAGAAATCCTGCTTCGTGGATTGGCAACTGCCTCAGTTGACAGCACTACTGGTGATATCTTCAAGAGCCCATCTTCTGTAGCTGTTGGAATGAAGAGCGAGCTAGCAGAATATTTGATTCAGGGGTCCATGACGCTTGTTCGTGAGGCTGTCGACGGAGGCGAGGATCACTCAGAACAATTAATAAAAGCATCCACCATGCCGACGGAGTTCCTCTCAGACTTGATCGAT GGTTTTGTAGCATCAAAACGGAACTTGTTGAGCCATGTGTCTGGG  TTTTTGTCTAGCGAAACCCGCTTGAACAAAATTAAAGACTTCATACAGAAGCTGGAGATGGAGAACTTCTGGGCACCAGATGTTAGAGAGGCTACTGCAGGGACTATTCTTAAGAGTATAGACATGAAATGCATTATCCATTGCCCTGAGAGATTTGACACACAAGATAAGCTGGCTGAACACAGGAATCTGTGTAGATTTAGGATAGTAAACTGCAAAAATGATGGATGTTTAGCTTCCTTTTCTGCTAATCACATTGAGAAGCATGACTCTGTCTGCCCATTCAAAGTCCTACCATGTGAGCAGTTGTGCGAGCAGCATGTTATGCGGTGTGAGATGGACAGGCATTGTGCATCAGTTTGCCCTATGAAGCTTATTAACTGCCCTTTTTACCAGGTTGGCTGTGAATCAGCCTTTCCGCAGTGTGTTCTTGATAAGCATTGTTCAGAGCGCCTTCAAATCCATCTGATGTATATTCTTGAGCTAACTACAAGACATGATGCTTTTGTTAATGATATGAATCAACGATTACACCTCCTTGAGAAGGCCCAGTCACTGAATGAACTCTCTGGGGCTTTAGATAACAGAA CCCTCACTCTAACAGCAAAGGAGCAAGAAGCAAAGATCAAGAAACTCGAACAGGATCTCAAAGTGCAAGAGACAAAGCTGGAGAAACTTGAAAGCGAGTTTAAGTCAGGGAAAGTGTGAATACATCCTTCGGCCATCCCGGCTAAAAAGAAGTGTGAATGCGTGATGTTGTGATTATAGTGTTACTGTAAAAAACCAGGGCGTCATACTTTAGTAGCTGTAAATAATAATTAGCACCTCCTTACAGTTTACCATACTTCTGTGTGTTGTTCATGTACGATAAGAAAATAAGGTTTAGAAAAGTCAGCTTCTCTTGAATTCTTTTGTTAGTTTGAAGTAACAGTGTTTGATCTTTTCTGTATCATGCAGTAAGTACATATATATTGTGGAGATGAAGTT                                ]
[+] EMBL CF327110             [                                  TCTTCTCTCTCCCCCTCCCCGTGGCGCTGACGCGACGCGCTCTCCTCCGGCGAGGTCTCTGACTCTCCAGCGCTGCGCGGCGCCGTATCGCCGGCCGCGAACTCGAGGCTGGGCTGGGCGGGCGTATCGTTCCTGCTCCCGGAGAAGACTGTTATGATGATTTGAACTACTGCTTGGTATTACAATGGAGAACCTTGAATGCACAGTTGGGAAAGATGGCTTAAATTTTCAGTGCAACCTGTGTGATTCAGATGTAGTGCATTCCATGGCAGAAATCCTGCTTCGTGGATTGGCAACTGCCTCAGTTGACAGCACTACTGGTGATATCTTCAAGAGCCCATCTTCTGTAGCTGTTGGAATGAAGAGCGAGCTAGCAGAATATTTGATTCAGAGGTCCATGACGCTTGTTCGTGAGGCTGTCGACGGAGGCGAGGATCACTCAGAACAATTAATAAAAGCATCCACCATGCCGACGGAGTTCCTCTCAGACTTGATCGATGGGTTNTGTAGCATCAAAACGGAACTTGTTGAGCCATGTGTCTGGGTTTTTTTGTCTAGCGAAACCCGCTTGAACAAAATTAAAGACTTCATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CF327109             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGATAAGCATTGTTCAGAGCGCCTTCAAATCCATCTGATGTATATTCTTGAACTAACTACAAGACATGATGCTTTTGTTAATGATATGAATCAACGATTACACCT CTTGAGAAGGCCCAGTCACTGAATGAACTCTCTGGGGCTTTAGATAACAGAACCCCTCACTCTAACAGCAAAGGAGCAAGAAGCAAAGATCAAGAAACTCGAACAGGATCTCAAAGTGCAAGAGACAAAGCTGAAGAAACTTGAAAGCGAGTTTAAGTCAGGGAAAGTGTGAATACATCCTTCGGCCATCCCGGCTAAAAAGAAGTGTGAATGCGTGATGTTGTGATTATAGTGTTACTGTAAAAAACCAGGGCGTCATACTTTAGTAGCTGTAAATAATAATTAGCACCTCCTTACAGTTTACCATACTTCTGTGTGTTGCTCATGTACGATAAGAAAATAAGGTTTAGAAAAGTCAGCTTCTCTTGAATTCTTTTGTTAGTTTGAAGTAACAGTGTTTGATCTTTTCTGTATCATGCAGTAAGTACATATATATTGTGGAGATGAAGTTCATTTGGATCATCTGCCATCTTCTTCAAAAAA]


>consensus_4633#0 CCTGTTCTTTCCTTCCTCCTCTTCTCGTGGGCCTTCTTCTCTCTCCCCCTCCCCGTGGCG CTGACGCGACGCGCTCTCCTCCGGCGAGGTCTCTGACTCTCCAGCGCTGCGCGGCGCCGT ATCGCCGGCCGCGAACTCGAGGCTGGGCTGGGCGGGCGTATCGTTCCTGCTCCCGGAGAA GACTGTTATGATGATTTGAACTACTGCTTGGTATTACAATGGAGAACCTTGAATGCACAG TTGGGAAAGATGGCTTAAATTTTCAGTGCAACCTGTGTGATTCAGATGTAGTGCATTCCA TGGCAGAAATCCTGCTTCGTGGATTGGCAACTGCCTCAGTTGACAGCACTACTGGTGATA TCTTCAAGAGCCCATCTTCTGTAGCTGTTGGAATGAAGAGCGAGCTAGCAGAATATTTGA TTCAGGGGTCCATGACGCTTGTTCGTGAGGCTGTCGACGGAGGCGAGGATCACTCAGAAC AATTAATAAAAGCATCCACCATGCCGACGGAGTTCCTCTCAGACTTGATCGATGGTTTTG TAGCATCAAAACGGAACTTGTTGAGCCATGTGTCTGGGTTTTTGTCTAGCGAAACCCGCT TGAACAAAATTAAAGACTTCATACAGAAGCTGGAGATGGAGAACTTCTGGGCACCAGATG TTAGAGAGGCTACTGCAGGGACTATTCTTAAGAGTATAGACATGAAATGCATTATCCATT GCCCTGAGAGATTTGACACACAAGATAAGCTGGCTGAACACAGGAATCTGTGTAGATTTA GGATAGTAAACTGCAAAAATGATGGATGTTTAGCTTCCTTTTCTGCTAATCACATTGAGA AGCATGACTCTGTCTGCCCATTCAAAGTCCTACCATGTGAGCAGTTGTGCGAGCAGCATG TTATGCGGTGTGAGATGGACAGGCATTGTGCATCAGTTTGCCCTATGAAGCTTATTAACT GCCCTTTTTACCAGGTTGGCTGTGAATCAGCCTTTCCGCAGTGTGTTCTTGATAAGCATT GTTCAGAGCGCCTTCAAATCCATCTGATGTATATTCTTGAGCTAACTACAAGACATGATG CTTTTGTTAATGATATGAATCAACGATTACACCTCCTTGAGAAGGCCCAGTCACTGAATG AACTCTCTGGGGCTTTAGATAACAGAACCCTCACTCTAACAGCAAAGGAGCAAGAAGCAA AGATCAAGAAACTCGAACAGGATCTCAAAGTGCAAGAGACAAAGCTGGAGAAACTTGAAA GCGAGTTTAAGTCAGGGAAAGTGTGAATACATCCTTCGGCCATCCCGGCTAAAAAGAAGT GTGAATGCGTGATGTTGTGATTATAGTGTTACTGTAAAAAACCAGGGCGTCATACTTTAG TAGCTGTAAATAATAATTAGCACCTCCTTACAGTTTACCATACTTCTGTGTGTTGTTCAT GTACGATAAGAAAATAAGGTTTAGAAAAGTCAGCTTCTCTTGAATTCTTTTGTTAGTTTG AAGTAACAGTGTTTGATCTTTTCTGTATCATGCAGTAAGTACATATATATTGTGGAGATG AAGTTCATTTGGATCATCTGCCATCTTCTTCAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)