These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2084 fasta sequence [CTCATCCTCACGCGCGGAAACTGTTTGTACTCGAGCCCACTCCAACTCCACTCCACTACGCCGATCGTGTCACACGCACGCGCGCATGGCGGCGGTCGCGCTGCTCTCGCCAGCGGCGGCTGCGGCGGTGGTGACAGAGGGTGAGGAGAAGCCGCCGCTGGAGGAGGTGGAGGTGGAGGTGGAGGTGGTGGTGCGGGCGATCGTGGCCGACGGCGACGGGAGGGAGGCGAATGCGGCGGCGCCGGGGGCGAATTGGTGCGGGGAGGAGGAGGTGCCGGCGCATGCAGCGGAGGGGGGCACGGTCGCCGCGATGGTGGACGAGAATGCGGCGGCGCCTGCAGCGGAGGGGGACACGGTGGCCGCGGCGAAGGGGGAGGCGCCTGCAGCGGAGGGGGACATGGTGGTCGCCGCGAAGGGGGCGGCGCATGCAGCGGCGGAGGGGGACACGGTGGCGGCGGCGGCGGTAGCGGGCGAGAACGAGGCGGCGCATGCACCAGCAGCGGGGGGGAACACGGTGGCCGCGGCTGCGGATGTCAAGGGCGAGTGCTTCAAGCGATTCCGGTGGCCGACGAGGCGGCGGCCGTGGCGGAGGGGGTTAACGCGATCGCCGCGGCGGAGCGGGAGGAGGACGACGAGGGGGTGAAGTGGCTGAAGCACTACTCCTCCCTCCAGAGCATACTCACCGTCGGGGACGGGGACTTCTCCTTCTCGCTGGCGCTCGCCACCGCGTTCGGCTCCGGCGACAACCTCGTCGCCACCTCGCTGGACACCATTGAGGACCTGAGGGGCAAATACAGCAAAGCAGAATCAAATATAATGGAGCTGAAAAGGATGGGGGCCACTGTTTTGCATGGCATCGATGCAAAAAGGATGAAGGATCACACCAACCTGAAGCTGAGACGGTTTGATCGAATTATCTTCAATTTTCCTCATGCTGGATTCAAAGGAAAAGAGGATGATTTGCATATGATCAATTTGCACAGGGAGTTGGTATGGGGTTTTTTTCAGAATGCAAGACACCTGCTTCGACCCTATGGTGAAATTCATGTTAGCCACAAGATAGGATTGCCATATGACAGGTGGTGTATCGAGCATCTAGCATATGAGTCTTCTCTTACAATGATTGCTAAAGTTGATTTCAGAAAAGAGGACTACCCAGGTTACAACCAAAAGAGAGGAGACAGTGCAAAGTGTGATCAACCTTTTGAACTAGGTGCTTGCTGCACTTTCATGTTCATGAGAGATTTGACGAGGCTGAAAAGGGCACGTCGGAACAGGATCAATGCATCTTCACTGGGAATCCAAGCCCAACATGACATGCCATTTCACCCACGTCCGCTTGTTCCAGCATATCCTCAGCCACATTTCCCTTCACAAGTCAATGCAGCTCACAGGCAAGTTCCTCCAGAGCATTACCCCCTCGGAATTGCTCATGGGCAAGAGCCAGGTTTTCTAGATAACTTTGGTGGCATAGAGAGGTATCCTTACCAGCGTGGCGCTATCGGGACAGTGATCGGCATGCCAGGCACTCCTTCACCAATGCGCGGAATAACCAGAAGTAGCTTCCCTGCACCTCAGGAGCAGCCTTGGCGTCAAGAGAGATATATTATGGATCCAGAAGTAAGAGATGATCACTACCATTTTGCCCGGGAATACCCGAGGAATCTGCAGGAGTATGAAATGGAGAGGCAGGTGATGCCAGGAGGAACCAGGTTGAGGTACGTCGATTTCCTGGAAAATCGTTACGAGGAATCTGTTCGGAGGCAGGAGCACCTGCGAAGGCTGATTGCAGAGTATGGTGGATACGACTGATGGTCTTCAGTGTATGGGTGTATCTTTTATCTGCTTGTAGAACAGATGAACTCGCCCTTTCAAGATGTGATATGCTCGGTCTGATATGGGTATTGAAAGATGCTTTTGGGTTGAAGCTGTACAGGTAGAGTCATTTTGTGTGGCAAATTATCGTCTAGCCACAAAAACATAGCAGCATAAGGAAATGCTCTTTAGTGTAAGAAATCCTATACTTTCAGGCAATAGTTGCTACCTGCAACAAGCCAACAACTATCTTCATATATGCACAGCGT] [+] EMBL AK109596 [CTCATCCTCACGCGCGGAAACTGTTTGTACTCGAGCCCACTCCAACTCCACTCCACTACGCCGATCGTGTCACACGCACGCGCGCATGGCGGCGGTCGCGCTGCTCTCGCCAGCGGCGGCTGCGGCGGTGGTGACAGAGGGTGAGGAGAAGCCGCCGCTGGAGGAGGTGGAGGTGGAGGTGGAGGTGGTGGTGCGGGCGATCGTGGCCGACGGCGACGGGAGGGAGGCGAATGCGGCGGCGCCGGGGGCGAATTGGTGCGGGGAGGAGGAGGTGCCGGCGCATGCAGCGGAGGGGGGCACGGTCGCCGCGATGGTGGACGAGAATGCGGCGGCGCCTGCAGCGGAGGGGGACACGGTGGCCGCGGCGAAGGGGGAGGCGCCTGCAGCGGAGGGGGACATGGTGGTCGCCGCGAAGGGGGCGGCGCATGCAGCGGCGGAGGGGGACACGGTGGCGGCGGCGGCGGTAGCGGGCGAGAACGAGGCGGCGCATGCACCAGCAGCGGGGGGGAACACGGTGGCCGCGGCTGCGGATGTCAAGGGCGAGTGCTTCAAGCGATTCCGGTGGCCGACGAGGCGGCGGCCGTGGCGGAGGGGGTTAACGCGATCGCCGCGGCGGAGCGGGAGGAGGACGACGAGGGGGTGAAGTGGCTGAAGCACTACTCCTCCCTCCAGAGCATACTCACCGTCGGGGACGGGGACTTCTCCTTCTCGCTGGCGCTCGCCACCGCGTTCGGCTCCGGCGACAACCTCGTCGCCACCTCGCTGGACACCATTGAGGACCTGAGGGGCAAATACAGCAAAGCAGAATCAAATATAATGGAGCTGAAAAGGATGGGGGCCACTGTTTTGCATGGCATCGATGCAAAAAGGATGAAGGATCACACCAACCTGAAGCTGAGACGGTTTGATCGAATTATCTTCAATTTTCCTCATGCTGGATTCAAAGGAAAAGAGGATGATTTGCATATGATCAATTTGCACAGGGAGTTGGTATGGGGTTTTTTTCAGAATGCAAGACACCTGCTTCGACCCTATGGTGAAATTCATGTTAGCCACAAGATAGGATTGCCATATGACAGGTGGTGTATCGAGCATCTAGCATATGAGTCTTCTCTTACAATGATTGCTAAAGTTGATTTCAGAAAAGAGGACTACCCAGGTTACAACCAAAAGAGAGGAGACAGTGCAAAGTGTGATCAACCTTTTGAACTAGGTGCTTGCTGCACTTTCATGTTCATGAGAGATTTGACGAGGCTGAAAAGGGCACGTCGGAACAGGATCAATGCATCTTCACTGGGAATCCAAGCCCAACATGACATGCCATTTCACCCACGTCCGCTTGTTCCAGCATATCCTCAGCCACATTTCCCTTCACAAGTCAATGCAGCTCACAGGCAAGTTCCTCCAGAGCATTACCCCCTCGGAATTGCTCATGGGCAAGAGCCAGGTTTTCTAGATAACTTTGGTGGCATAGAGAGGTATCCTTACCAGCGTGGCGCTATCGGGACAGTGATCGGCATGCCAGGCACTCCTTCACCAATGCGCGGAATAACCAGAAGTAGCTTCCCTGCACCTCAGGAGCAGCCTTGGCGTCAAGAGAGATATATTATGGATCCAGAAGTAAGAGATGATCACTACCATTTTGCCCGGGAATACCCGAGGAATCTGCAGGAGTATGAAATGGAGAGGCAGGTGATGCCAGGAGGAACCAGGTTGAGGTACGTCGATTTCCTGGAAAATCGTTACGAGGAATCTGTTCGGAGGCAGGAGCACCTGCGAAGGCTGATTGCAGAGTATGGTGGATACGACTGATGGTCTTCAGTGTATGGGTGTATCTTTTATCTGCTTGTAGAACAGATGAACTCGCCCTTTCAAGATGTGATATGCTCGGTCTGATATGGGTATTGAAAGATGCTTTTGGGTTGAAGCTGTACAGGTAGAGTCATTTTGTGTGGCAAATTATCGTCTAGCCACAAAAACATAGCAGCATAAGGAAATGCTCTTTAGTGTAAGAAATCCTATACTTTCAGGCAATAGTTGCTACCTGCAACAAGCCAACAACTATCTTCATATATGCACAGCGT] [+] EMBL CF328131 [ GCATCTAGCATATGAGTCTTCTCTTACAATGATTGCTAAAGTTGATTTCAGAAAAGAGGACTACCCAGGTTACAACCAAAAGAGAGGAGACAGTGCAAAGTGTGATCAACCTTTTGAACTAGGTGCTTGCTGCACTTTCATGTTCATGAGAGATTTGACGAGGCTGAAAAGGGCACGTCGGAACAGGATCAATGCATCTTCACTGGGAATCCAAGCCCAACATGACATGCCATTTCACCCACGTCCGCTTGTTCCAGCATATCCTCAGCCACATTTCCCTTCACAAGTCAATGCAGCTCACAGGCAAGTTCCTCCAGAGCATTACCCCCTCGGAATTGCTCATGGGCAAGAGCCAGGTTTTCTAGATAACTTTGGTGGCATAGAGAGGTATCCTTACCAGCGTGGCGCTATCGGGACAGTGATCGGCATGCCAGGCACTCCTTCACCAATGCGCGGAATAACCAGAAGTAGCTTCCCTGCACCTCAGGAGCAGCCTTGGCGTCAAGAGAGATATATTATGGATCCAGAAGTAAGAGATGATCACTACCATTTTGCCCGGGAATACCCGAGGAATCTGCAGGAGTATGAAATGGAGAGGCAGGTGATGCCAGGAGGAACCAGGTTGAGGTACGTCGATTTCCTGG ] consensusID : consensus_4637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence [TTTCAAGATGTGATATGCTCGGTCTGATATGGGTATTGAAAGATGCTTTTGGGTTGAAGCTGTACAGGTAGAGTCATCTTGTGTGGCAAATTATCGTCTAGCCACAAAAACATAGCAGCATAAGGAAATGCTCTTTAGTGTAAGAAATCCTATACTTTCAGGCAATAGTTGCTACCTGCAACAAGCCAACAACTATCTTCATAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF327321 [TTTCAAGATGTGATATGCTCGGTCTGATATGGGTATTGAAAGATGCTTTTGGGTTGAAGCTGTACAGGTAGAGTCATCTTGTGTGGCAAATTATCGTCTAGCCACAAAAACATAGCAGCATAAGGAAATGCTCTTTAGTGTAAGAAATCCTATACTTTCAGGCAATAGTTGCTACCTGCAACAAGCCAACAACTATCTTCATAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4637#0 CTCATCCTCACGCGCGGAAACTGTTTGTACTCGAGCCCACTCCAACTCCACTCCACTACG 60 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 CCGATCGTGTCACACGCACGCGCGCATGGCGGCGGTCGCGCTGCTCTCGCCAGCGGCGGC 120 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 TGCGGCGGTGGTGACAGAGGGTGAGGAGAAGCCGCCGCTGGAGGAGGTGGAGGTGGAGGT 180 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 GGAGGTGGTGGTGCGGGCGATCGTGGCCGACGGCGACGGGAGGGAGGCGAATGCGGCGGC 240 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 GCCGGGGGCGAATTGGTGCGGGGAGGAGGAGGTGCCGGCGCATGCAGCGGAGGGGGGCAC 300 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 GGTCGCCGCGATGGTGGACGAGAATGCGGCGGCGCCTGCAGCGGAGGGGGACACGGTGGC 360 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 CGCGGCGAAGGGGGAGGCGCCTGCAGCGGAGGGGGACATGGTGGTCGCCGCGAAGGGGGC 420 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 GGCGCATGCAGCGGCGGAGGGGGACACGGTGGCGGCGGCGGCGGTAGCGGGCGAGAACGA 480 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 GGCGGCGCATGCACCAGCAGCGGGGGGGAACACGGTGGCCGCGGCTGCGGATGTCAAGGG 540 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 CGAGTGCTTCAAGCGATTCCGGTGGCCGACGAGGCGGCGGCCGTGGCGGAGGGGGTTAAC 600 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 GCGATCGCCGCGGCGGAGCGGGAGGAGGACGACGAGGGGGTGAAGTGGCTGAAGCACTAC 660 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 TCCTCCCTCCAGAGCATACTCACCGTCGGGGACGGGGACTTCTCCTTCTCGCTGGCGCTC 720 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 GCCACCGCGTTCGGCTCCGGCGACAACCTCGTCGCCACCTCGCTGGACACCATTGAGGAC 780 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 CTGAGGGGCAAATACAGCAAAGCAGAATCAAATATAATGGAGCTGAAAAGGATGGGGGCC 840 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 ACTGTTTTGCATGGCATCGATGCAAAAAGGATGAAGGATCACACCAACCTGAAGCTGAGA 900 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 CGGTTTGATCGAATTATCTTCAATTTTCCTCATGCTGGATTCAAAGGAAAAGAGGATGAT 960 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 TTGCATATGATCAATTTGCACAGGGAGTTGGTATGGGGTTTTTTTCAGAATGCAAGACAC 1020 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 CTGCTTCGACCCTATGGTGAAATTCATGTTAGCCACAAGATAGGATTGCCATATGACAGG 1080 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 TGGTGTATCGAGCATCTAGCATATGAGTCTTCTCTTACAATGATTGCTAAAGTTGATTTC 1140 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 AGAAAAGAGGACTACCCAGGTTACAACCAAAAGAGAGGAGACAGTGCAAAGTGTGATCAA 1200 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 CCTTTTGAACTAGGTGCTTGCTGCACTTTCATGTTCATGAGAGATTTGACGAGGCTGAAA 1260 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 AGGGCACGTCGGAACAGGATCAATGCATCTTCACTGGGAATCCAAGCCCAACATGACATG 1320 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 CCATTTCACCCACGTCCGCTTGTTCCAGCATATCCTCAGCCACATTTCCCTTCACAAGTC 1380 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 AATGCAGCTCACAGGCAAGTTCCTCCAGAGCATTACCCCCTCGGAATTGCTCATGGGCAA 1440 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 GAGCCAGGTTTTCTAGATAACTTTGGTGGCATAGAGAGGTATCCTTACCAGCGTGGCGCT 1500 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 ATCGGGACAGTGATCGGCATGCCAGGCACTCCTTCACCAATGCGCGGAATAACCAGAAGT 1560 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 AGCTTCCCTGCACCTCAGGAGCAGCCTTGGCGTCAAGAGAGATATATTATGGATCCAGAA 1620 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 GTAAGAGATGATCACTACCATTTTGCCCGGGAATACCCGAGGAATCTGCAGGAGTATGAA 1680 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 ATGGAGAGGCAGGTGATGCCAGGAGGAACCAGGTTGAGGTACGTCGATTTCCTGGAAAAT 1740 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 CGTTACGAGGAATCTGTTCGGAGGCAGGAGCACCTGCGAAGGCTGATTGCAGAGTATGGT 1800 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 GGATACGACTGATGGTCTTCAGTGTATGGGTGTATCTTTTATCTGCTTGTAGAACAGATG 1860 consensus_4637#1 ------------------------------------------------------------ consensus_4637#0 AACTCGCCCTTTCAAGATGTGATATGCTCGGTCTGATATGGGTATTGAAAGATGCTTTTG 1920 consensus_4637#1 ---------TTTCAAGATGTGATATGCTCGGTCTGATATGGGTATTGAAAGATGCTTTTG 51 *************************************************** consensus_4637#0 GGTTGAAGCTGTACAGGTAGAGTCATTTTGTGTGGCAAATTATCGTCTAGCCACAAAAAC 1980 consensus_4637#1 GGTTGAAGCTGTACAGGTAGAGTCATCTTGTGTGGCAAATTATCGTCTAGCCACAAAAAC 111 ************************** ********************************* consensus_4637#0 ATAGCAGCATAAGGAAATGCTCTTTAGTGTAAGAAATCCTATACTTTCAGGCAATAGTTG 2040 consensus_4637#1 ATAGCAGCATAAGGAAATGCTCTTTAGTGTAAGAAATCCTATACTTTCAGGCAATAGTTG 171 ************************************************************ consensus_4637#0 CTACCTGCAACAAGCCAACAACTATCTTCATATATGCACAGCGT---------- 2084 consensus_4637#1 CTACCTGCAACAAGCCAACAACTATCTTCATAAAAAAAAAAAAAAAAAAAAAAA 225 ******************************** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||