These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4661#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1094 fasta sequence [CCATTTCCATTCCCCCCACCACCGCGCAGCGGCGCAGGCAGCGATGGTGACCAACGCTCGCCGCCGCCGCCGCCTCAGGTGAGCACGACGCCCCGCGCGCGTCCCCGCACCCTGGAAGGAAGAGCAGCAGAAGACGACTCCGACGCCCACGCCCGCCATGGATCCGGCGTCCGAGGAGCTCGAGCAGCGCAGCCGCTACCTCAGCTCGCTCATCCGCCGCACCAAGCTCCACGCCGCGCCGGCGCTCGCCCCGCCCCCGCCCACGCCTCCCCCGGAGCCCGAGACGAAGCTGCAGCTGGAGATGGAGCCGCAGCCGGAGCGAGTCGAGGAGGCCGCCAAGAAGCCGGCGGCGGTGGCCGCCGTGGTGGAGAAGAGGGAGGTCAAGGGAGGGGGTGGCGGTGGCGGCCAAGCTGGGAAGGGGAAGGGGAAGGAGAAGGAGATGGAGAAGGGGAAGGAGGAGAGGAAGGTGTCGGTCCGGGTGCGCGCGGCCGACATGCCGCTGGCGATGCAGCGGCGCGCGGTCCGCCTCGCCTTCGACGCCGTCGCCGCCATGCCGCGGCTCGACAGCAAGCGCCTCGCCCTCGCCCTCAAGAAGGAATTCGACGCAACATATGGTCCTGCTTGGCACTGCATTGTTGGTACAGGCTTTGGTTCCTATGTCACCCACTCTGTGGGAGGCTTCTTGTACTTCTCCGTCGACAAGGTCTACGTTCTTCTCTTCAGAACCGCTGTCGAGCCATTAGGCCATCCACAATGAGATCAAAAATCGATTCATTACAAGGTAAAAAATTGCTGTGTATTATATGTATCTGACGTCC-AAGAGCCGTA-GAATGTTAA-GGTGAGTAGAACAATCGTGGCTCTCCATGGAAATTAATCTGCAGCCGATGTAAACATTTGGCATCCAATCCATGAACTCTGGAAGCTTTTAGTTGAGTCACTTCTCCAGCATGAAGAAAACTAGCTTTTGCTTCCGACCGTGCCTTGTATGTTGTATCTGGTTCTTATTGATCAGAGCTAGAAAACCTGAGCTGCGAGTTGTGGTACCTGAAAAATCAGGGAAATATAGCGAGTCTGATGATGCTTCCCATTTGGAC] [+] EMBL AK103053 [CCATTTCCATTCCCCCCACCACCGCGCAGCGGCGCAGGCAGCGATGGTGACCAACGCTCGCCGCCGCCGCCGCCTCAGGTGAGCACGACGCCCCGCGCGCGTCCCCGCACCCTGGAAGGAAGAGCAGCAGAAGACGACTCCGACGCCCACGCCCGCCATGGATCCGGCGTCCGAGGAGCTCGAGCAGCGCAGCCGCTACCTCAGCTCGCTCATCCGCCGCACCAAGCTCCACGCCGCGCCGGCGCTCGCCCCGCCCCCGCCCACGCCTCCCCCGGAGCCCGAGACGAAGCTGCAGCTGGAGATGGAGCCGCAGCCGGAGCGAGTCGAGGAGGCCGCCAAGAAGCCGGCGGCGGTGGCCGCCGTGGTGGAGAAGAGGGAGGTCAAGGGAGGGGGTGGCGGTGGCGGCCAAGCTGGGAAGGGGAAGGGGAAGGAGAAGGAGATGGAGAAGGGGAAGGAGGAGAGGAAGGTGTCGGTCCGGGTGCGCGCGGCCGACATGCCGCTGGCGATGCAGCGGCGCGCGGTCCGCCTCGCCTTCGACGCCGTCGCCGCCATGCCGCGGCTCGACAGCAAGCGCCTCGCCCTCGCCCTCAAGAAGGAATTCGACGCAACATATGGTCCTGCTTGGCACTGCATTGTTGGTACAGGCTTTGGTTCCTATGTCACCCACTCTGTGGGAGGCTTCTTGTACTTCTCCGTCGACAAGGTCTACGTTCTTCTCTTCAGAACCGCTGTCGAGCCATTAGGCCATCCACAATGAGATCAAAAATCGATTCATTACAAGGTAAAAAATTGCTGTGTATTATATGTATCTGACGTCC AAGAGCCGTA GAATGTTAA GGTGAGTAGAACAATCGTGGCTCTCCATGGAAATTAATCTGCAGCCGATGTAAACATTTGGCATCCAATCCATGAACTCTGGAAGCTTTTAGTTGAGTCACTTCTCCAGCATGAAGAAAACTAGCTTTTGCTTCCGACCGTGCCTTGTATGTTGTATCTGGTTCTTATTGATCAGAGCTAGAAAACCTGAGCTGCGAGTTGTGGTACCTGAAAAATCAGGGAAATATAGCGAGTCTGATGATGCTTCCCATTTGGAC] [+] EMBL OS1668A [ GCCGCTGGCGATGCAGCGGCGCGCGGTCCGCCTCGCCTTCGACGCCGTCGCCGCCATGCCGCGGCTCGACAGCAAGCGCCTCGCCCTCGCCCTCAAGAAGGAATTCGACGCAACATATGGTCCTGCTTGGCACTGCATTGTTGGTACAGGCTTTGGTTCCTATGTCACCCACTCTGTGGGAGGCTTCTTGTACTTCTCCGTCGNCAAGGTCTACGTTCTTCTCTTCAGAACCGCTGTCGAGCCATTAGGCCATCCACAATGAGATCAAAAATCGATTCATTACAAGGTAAAAAATTGCTGTGTATTATATGTATCTNACGTCCAAAGAGCCGTAGGAATGTTAAGGGTGNGTAGAcc ] consensusID : consensus_4661#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 82 fasta sequence [TCTGCAGCCGATGTAAACATTTGGCATCCAATCCATGAACTCTGGAAGCTTTAAGTTGAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF327657 [TCTGCAGCCGATGTAAACATTTGGCATCCAATCCATGAACTCTGGAAGCTTTAAGTTGAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4661#0 CCATTTCCATTCCCCCCACCACCGCGCAGCGGCGCAGGCAGCGATGGTGACCAACGCTCG 60 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 CCGCCGCCGCCGCCTCAGGTGAGCACGACGCCCCGCGCGCGTCCCCGCACCCTGGAAGGA 120 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 AGAGCAGCAGAAGACGACTCCGACGCCCACGCCCGCCATGGATCCGGCGTCCGAGGAGCT 180 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 CGAGCAGCGCAGCCGCTACCTCAGCTCGCTCATCCGCCGCACCAAGCTCCACGCCGCGCC 240 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 GGCGCTCGCCCCGCCCCCGCCCACGCCTCCCCCGGAGCCCGAGACGAAGCTGCAGCTGGA 300 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 GATGGAGCCGCAGCCGGAGCGAGTCGAGGAGGCCGCCAAGAAGCCGGCGGCGGTGGCCGC 360 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 CGTGGTGGAGAAGAGGGAGGTCAAGGGAGGGGGTGGCGGTGGCGGCCAAGCTGGGAAGGG 420 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 GAAGGGGAAGGAGAAGGAGATGGAGAAGGGGAAGGAGGAGAGGAAGGTGTCGGTCCGGGT 480 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 GCGCGCGGCCGACATGCCGCTGGCGATGCAGCGGCGCGCGGTCCGCCTCGCCTTCGACGC 540 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 CGTCGCCGCCATGCCGCGGCTCGACAGCAAGCGCCTCGCCCTCGCCCTCAAGAAGGAATT 600 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 CGACGCAACATATGGTCCTGCTTGGCACTGCATTGTTGGTACAGGCTTTGGTTCCTATGT 660 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 CACCCACTCTGTGGGAGGCTTCTTGTACTTCTCCGTCGACAAGGTCTACGTTCTTCTCTT 720 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 CAGAACCGCTGTCGAGCCATTAGGCCATCCACAATGAGATCAAAAATCGATTCATTACAA 780 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 GGTAAAAAATTGCTGTGTATTATATGTATCTGACGTCCAAGAGCCGTAGAATGTTAAGGT 840 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 GAGTAGAACAATCGTGGCTCTCCATGGAAATTAATCTGCAGCCGATGTAAACATTTGGCA 900 consensus_4661#1 ----------------------------------TCTGCAGCCGATGTAAACATTTGGCA 26 ************************** consensus_4661#0 TCCAATCCATGAACTCTGGAAGCTTTTAGTTGAGTCACTTCTCCAGCATGAAGAAAACTA 960 consensus_4661#1 TCCAATCCATGAACTCTGGAAGCTTTAAGTTGAAAAAAAAAAAAAAAAAAAAAAAA---- 82 ************************** ****** * * * ** *** consensus_4661#0 GCTTTTGCTTCCGACCGTGCCTTGTATGTTGTATCTGGTTCTTATTGATCAGAGCTAGAA 1020 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 AACCTGAGCTGCGAGTTGTGGTACCTGAAAAATCAGGGAAATATAGCGAGTCTGATGATG 1080 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 CTTCCCATTTGGAC 1094 consensus_4661#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||