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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4692#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 680 fasta sequence
[ACTATTAACCCCTTCGTCCCCTCTCCTCTTCTTCTACCTCGCGACCACTTCACTGGACTACACTACCACCTCTCTCTCGCTCTCTCTCGCGGCCATGGCGTCGTACAGGTTGCTCGTNATCCTCGTNTTCTNCGCGCTCGTNGCCTTGGCCGCCGGCGACACCTACCCGGCGGACTGCCCCTACCCATGCCTGCTGCCGCCGCCCACGCCGGTCACCACCGACTGTCCGNCACCGCCCTCCACGCCGTNTTCCGGCTACTCGTACCCGCCGCCGTCGTCCTCGTCTTCCAACACGCCGCCGTCGTCGTCGTCGTACTGGAACTACCCACCGCCGCAGGGCGGAGGAGGCGGCTACATTCCCTACTACCAGCCTCCCGCCGGCGGTGGCGGCGGCGGCGGCGGTTTCAACTACCCGGCGCCGCCTCCGCCCAACCCCATCGTGCCGTGGTACCCTTGGTACTACAGGTCGCCGCCGTCGTCGCCGGCGACGGCGGTGACGGCGCGGGGGCGTTCGCTGCTTGCCTCGGTGGCCGTGGTAACAGCTGCTGCTGCTGCTTTAATTACCGTGTTTTAATGTAGCTCTCTTTTTCTTCTTTTCTCTAGTTTTAATTTCTTTATTTTGGAGAAATATATGATGAGGCAGCATTGTTATTCTATACTATATACAAATATGATCTATT]
[+] EMBL C27795 [ACTATTAACCCCTTCGTCCCCTCTCCTCTTCTTCTACCTCGCGACCACTTCACTGGACTACACTACCACCTCTCTCTCGCTCTCTCTCGCGGCCATGGCGTCGTACAGGTTGCTCGTNATCCTCGTNTTCTNCGCGCTCGTNGCCTTGGCCGCCGGCGACACCTACCCGGCGGACTGCCCCTACCCATGCCTGCTGCCGCCGCCCACGCCGGTCACCACCGACTGTCCGNCACCGCCCTCCACGCCGTNTTCCG ]
[+] EMBL AK103623 [ CACTTCACTGGACTACACTACCACCTCTCTCTCGCTCTCTCTCGCGGCCATGGCGTCGTACAGGTTGCTCGTCATCCTCGTCTTCTCCGCGCTCGTCGCCTTGGCCGCCGGCGACACCTACCCAGCGGACTGCCCCTACCCATGCCTGCTGCCGCCGCCCACGCCGGTCACCACCGACTGTCCGCCACCGCCCTCCACGCCGTCTTCCGGCTACTCGTACCCGCCGCCGTCGTCCTCGTCTTCCAACACGCCGCCGTCGTCGTCGTCGTACTGGAACTACCCACCGCCGCAGGGCGGAGGAGGCGGCTACATTCCCTACTACCAGCCTCCCGCCGGCGGTGGCGGCGGCGGCGGCGGTTTCAACTACCCGGCGCCGCCTCCGCCCAACCCCATCGTGCCGTGGTACCCTTGGTACTACAGGTCGCCGCCGTCGTCGCCGGCGACGGCGGTGACGGCGCGGGGGCGTTCGCTGCTTGCCTCGGTGGCCGTGGTAACAGCTGCTGCTGCTGCTTTAATTACCGTGTTTTAATGTAGCTCTCTTTTTCTTCTTTTCTCTAGTTTTAATTTCTTTATTTTGGAGAAATATATGATGAGGCAGCATTGTTATTCTATACTATATACAAATATGATCTATT]
consensusID : consensus_4692#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence
[TCCGCGGACGCGTGCCCCCCGGTTTTAATGTAGCTCTCTTTTTCTTCTTTNCTCTAGTTTTAATTTCTTTATTTTGGAGAAATATATGATGAGGCAGCATTGTTATTCTATACTATATACAAATATGATCTATTATATTGCTCTAGTTTCTCCTCTAAATTTTTGACTTAAATAATTTAGTTTGATGTGTAGTGGAGCAACTATTTCAAGTTCTTCAAATCGTAATGCTACTGATCACAAGAATCTGGCCTTTTCCCGGTGCCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C97260 [TCCGCGGACGCGTGCCCCCCGGTTTTAATGTAGCTCTCTTTTTCTTCTTTNCTCTAGTTTTAATTTCTTTATTTTGGAGAAATATATGATGAGGCAGCATTGTTATTCTATACTATATACAAATATGATCTATTATATTGCTCTAGTTTCTCCTCTAAATTTTTGACTTAAATAATTTAGTTTGATGTGTAGTGGAGCAACTATTTCAAGTTCTTCAAATCGTAATGCTACTGATCACAAGAATCTGGCCTTTTCCCGGTGCCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4692#0 ACTATTAACCCCTTCGTCCCCTCTCCTCTTCTTCTACCTCGCGACCACTTCACTGGACTA 60
consensus_4692#1 -----------------------------------TCCGCGGACGCGTGCCCCCCGGTTT 25
** ** * * * * *
consensus_4692#0 CACTACCACCTCTCTCTCGCTCTCTCTCGCGGCCATGGCGTCGTACAGGTTGCTCGTNAT 120
consensus_4692#1 TAATGTAGCTCTCTTTTTCTTCTTTNCTCTAGTTTTAATTTC-TTTATTTTGGA-GAAAT 83
* * * * * *** * * * ** * * *** * **
consensus_4692#0 CCTCGTNTTCTNCGCGCTCGTNGCCTTGGCCGCCGGCGACACCTACCCGGCGGACTGCCC 180
consensus_4692#1 ATATGATGAGGCAGCATTGTTATTCTATACTATATACAAATATGATCTATTATATTGCTC 143
* ** * * ** * * * * * * *** *
consensus_4692#0 CTACCCATGCCTGCTGCCGCCGCCCACGCCGGTCACCACCGACTGTCCGNCACCGCCCTC 240
consensus_4692#1 TAGTTTCTCCTCTAAATTTTTGACTTAAATAATTTAGTTTGA-TGTGTAGTGGAGCAA-C 201
* * * * * ** *** ** *
consensus_4692#0 CACGCCGTNTTCCGGCTACTCGTACCCGCCGCCGTCGTCCTCGTCTTCCAACACGCCGCC 300
consensus_4692#1 TATTTCAAGTTCTT-CAAATCGTAAT-GCTACTG--ATCACAAGAATCTGGCCTTTTCCC 257
* * *** * * ***** ** * * ** ** * **
consensus_4692#0 GTCGTCGTCGTCGTACTGGAACTACCCACCGCCGCAGGGCGGAGGAGGCGGCTACATTCC 360
consensus_4692#1 GGTGCCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 303
* * * * ** * * * * *
consensus_4692#0 CTACTACCAGCCTCCCGCCGGCGGTGGCGGCGGCGGCGGCGGTTTCAACTACCCGGCGCC 420
consensus_4692#1 ------------------------------------------------------------
consensus_4692#0 GCCTCCGCCCAACCCCATCGTGCCGTGGTACCCTTGGTACTACAGGTCGCCGCCGTCGTC 480
consensus_4692#1 ------------------------------------------------------------
consensus_4692#0 GCCGGCGACGGCGGTGACGGCGCGGGGGCGTTCGCTGCTTGCCTCGGTGGCCGTGGTAAC 540
consensus_4692#1 ------------------------------------------------------------
consensus_4692#0 AGCTGCTGCTGCTGCTTTAATTACCGTGTTTTAATGTAGCTCTCTTTTTCTTCTTTTCTC 600
consensus_4692#1 ------------------------------------------------------------
consensus_4692#0 TAGTTTTAATTTCTTTATTTTGGAGAAATATATGATGAGGCAGCATTGTTATTCTATACT 660
consensus_4692#1 ------------------------------------------------------------
consensus_4692#0 ATATACAAATATGATCTATT 680
consensus_4692#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||