These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1137 fasta sequence [ACTTGCCCGCAAAATTGCAATAACTCACCATAATATTTCAAAATAATTCGACGGAATTCATTCGCTCGCGCCGTCTCCGAAACCGAATCCATTTCCTGATCCAGCAAAGGACACAGAGAGAGATCCCATCTCGTCCTCGTCGCCTCCGCCTCGTGAGCTCCACTCACCTACCCCACTTCCTCTCCTCGCTTCGGCCGCGGCCCCAAACCCTAACCCTCCCCGCGGCGATCCCGATGGCCACCACCTCCCGCCGATCCCTCCACGCCCTCCTCGGCGGCGGCGCAGTCGCCGACTTGGTGCTGTGGCGGCGGAGGAACGTGTCCGCGGCGGCCGTGGCGGGCGCCACGGCGGTGTGGTTCCTCTTCGAGCGCGCGGGGTACAGCTTCCCGTCAGTCATGGCCAACGCCCTGCTCCTCCTCGTCGCCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGGCCTCTTCCACCACTCCCTAAACTAGAGGTCTCAGATGTGGTTGTTGAGAAAGCTGCAGATCGGGCTCTTGTATGGATCAACAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTGTTTTTATAAAGGTTATATTGATTTTATGGGTGGTTTCATACATTGGAATGCTCTTCAACTTCCTTACGCTCATTTACATTGGTGTAATGTTTTCTCTGTTAGTTCCACCATTGTATGAGAAGTACCAGGACCAAGTCGATGAAAAGATTGGTATGGCGCACAGTGTACTATCAAGGCACTTAGATACCATCATTAGCAAGACTGGAGAATCAACCAAGCAAAAGAAGACTGAGTAACCGGTGTTTTTGCTACATTGGGAACCTCTTTTGTCATATGTGGTTGGTCATGAACCTCGTCAGTTACTCTCCATACCTGTGAACCACCACTGGAAATATTCTTGGATATCGAAGATGTCATGTTTGACTGCTGATGTAGTTTACATGCACTCTGTTCAATTTGAGAAATGGAATGCTTTGTATATTTTTTCAAGTAACATGACACATGCTGAGGTTTATCATGGGCACATATCTTGTGGATAATGATATATACTTTTCCCCTGAAATCATTTTCTGTAGCCGGCATATACAAATATGTTGGTTG] [+] EMBL AK071792 [ACTTGCCCGCAAAATTGCAATAACTCACCATAATATTTCAAAATAATTCGACGGAATTCATTCGCTCGCGCCGTCTCCGAAACCGAATCCATTTCCTGATCCAGCAAAGGACACAGAGAGAGATCCCATCTCGTCCTCGTCGCCTCCGCCTCGTGAGCTCCACTCACCTACCCCACTTCCTCTCCTCGCTTCGGCCGCGGCCCCAAACCCTAACCCTCCCCGCGGCGATCCCGATGGCCACCACCTCCCGCCGATCCCTCCACGCCCTCCTCGGCGGCGGCGCAGTCGCCGACTTGGTGCTGTGGCGGCGGAGGAACGTGTCCGCGGCGGCCGTGGCGGGCGCCACGGCGGTGTGGTTCCTCTTCGAGCGCGCGGGGTACAGCTTCCCGTCAGTCATGGCCAACGCCCTGCTCCTCCTCGTCGCCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGGCCTCTTCCACCACTCCCTAAACTAGAGGTCTCAGATGTGGTTGTTGAGAAAGCTGCAGATCGGGCTCTTGTATGGATCAACAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTGTTTTTATAAAGGTTATATTGATTTTATGGGTGGTTTCATACATTGGAATGCTCTTCAACTTCCTTACGCTCATTTACATTGGTGTAATGTTTTCTCTGTTAGTTCCACCATTGTATGAGAAGTACCAGGACCAAGTCGATGAAAAGATTGGTATGGCGCACAGTGTACTATCAAGGCACTTAGATACCATCATTAGCAAGACTGGAGAATCAACCAAGCAAAAGAAGACTGAGTAACCGGTGTTTTTGCTACATTGGGAACCTCTTTTGTCATATGTGGTTGGTCATGAACCTCGTCAGTTACTCTCCATACCTGTGAACCACCACTGGAAATATTCTTGGATATCGAAGATGTCATGTTTGACTGCTGATGTAGTTTACATGCACTCTGTTCAATTTGAGAAATGGAATGCTTTGTATATTTTTTCAAGTAACATGACACATGCTGAGGTTTATCATGGGCACATATCTTGTGGATAATGATATATACTTTTCCCCTGAAATCATTTTCTGTAGCCGGCATATACAAATATGTTGGTTG] consensusID : consensus_4714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1023 fasta sequence [AATTGCAATAACTCACCATAATATTTCAAAATAATTCGACGGAATTCATTCGCTCGCGCCGTCTCCGAAACCGAATCCATTTCCTGATCCAGCAAAGGACACAGAGAGAGATCCCATCTCGTCCTCGTCGCCTCCGCCTCGTGAGCTCCACTCACCTACCCCACTTCCTCTCCTCGCTTCGGCCGCGGCCCCAAACCCTAACCCTCCCCGCGGCGATCCCGATGGCCACCACCACCTCCCGCCGATCCCTCCACGCCCTCCTCGGCGGCGGCGCAGTCGCCGACT--TGGTGCTGTGGCGGCGGAGGAACGTGTCCGCGGCGGCCGTGGCGGGCGCCACGGCGGTGTGGTTCCTCTTCGAGCGCGCGGGGTACAGCTTCCCGTCAGTCATGGCCAACGCCCTGCTCCTCCTCGTCGCCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGGCCTCTTCCACCACTCCCTAAACTAGAGGTCTCAGATGTGGTTGTTGAGAAAGCTGCAGATCGGGCTCTTGTATGGATCAACAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTGTTTTT-ATAAAGGTTAT-ATTGATTTTATGGGTGGTTTCATACATTGGAATGCTCTTCAACTTCCTTACGCTCATTTACATTGGTGT-AATGTTTTCTCTGTTAGTTCCACCATTGTATGAGAAGTACCAGGACCAAGTCGATGAAAAGATTGGTATGGCGCACAGTGTACTATCAAGGCACTTAGATACCATCATTAGCAAGACTGGAGAATCAACCAAGCAAAAGAAGACTGAGTAACCGGTGTTTTTGCTACATTGGGTGAGCTTCTAAGACGGTTTGAATCTTTTTTACTAGTTCATGGTATACTCTAAATCCAACAAACCACTAATAGCTTTTGTGTTTCACATATTTAGTATGCTACACATTTCGTTAACATGATAGCATGGACAACATTTTTGTTTAACTCTTGCAATCTCAAGTTTACATAATGTTGCAA] [+] EMBL AY164903 [AATTGCAATAACTCACCATAATATTTCAAAATAATTCGACGGAATTCATTCGCTCGCGCCGTCTCCGAAACCGAATCCATTTCCTGATCCAGCAAAGGACACAGAGAGAGATCCCATCTCGTCCTCGTCGCCTCCGCCTCGTGAGCTCCACTCACCTACCCCACTTCCTCTCCTCGCTTCGGCCGCGGCCCCAAACCCTAACCCTCCCCGCGGCGATCCCGATGGCCACCACCACCTCCCGCCGATCCCTCCACGCCCTCCTCGGCGGCGGCGCAGTCGCCGACT TGGTGCTGTGGCGGCGGAGGAACGTGTCCGCGGCGGCCGTGGCGGGCGCCACGGCGGTGTGGTTCCTCTTCGAGCGCGCGGGGTACAGCTTCCCGTCAGTCATGGCCAACGCCCTGCTCCTCCTCGTCGCCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGGCCTCTTCCACCACTCCCTAAACTAGAGGTCTCAGATGTGGTTGTTGAGAAAGCTGCAGATCGGGCTCTTGTATGGATCAACAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTGTTTTT ATAAAGGTTAT ATTGATTTTATGGGTGGTTTCATACATTGGAATGCTCTTCAACTTCCTTACGCTCATTTACATTGGTGT AATGTTTTCTCTGTTAGTTCCACCATTGTATGAGAAGTACCAGGACCAAGTCGATGAAAAGATTGGTATGGCGCACAGTGTACTATCAAGGCACTTAGATACCATCATTAGCAAGACTGGAGAATCAACCAAGCAAAAGAAGACTGAGTAACCGGTGTTTTTGCTACATTGGGTGAGCTTCTAAGACGGTTTGAATCTTTTTTACTAGTTCATGGTATACTCTAAATCCAACAAACCACTAATAGCTTTTGTGTTTCACATATTTAGTATGCTACACATTTCGTTAACATGATAGCATGGACAACATTTTTGTTTAACTCTTGCAATCTCAAGTTTACATAATGTTGCAA] [+] EMBL C26978 [ GCCGATCCCTCCACGCCCTCCTCGGCGGCGGCGCAGTCGNC ACTTNTGGTGCTGTGGCGGCGGAGGAACGTGTCCGCGGCGGCCGTGGCGGGCGCCA GTGGNTGTGGTTCCTCTTCGAGCGCGCGGGGTACAGCTTCCCGTCAGTNATGGCCAACGCCCTGCTCCTCCTCGTNGCCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGGCCTCTTCCACCACTCCCTAAACTAGAGGTCTCAGATGTGGTTGTTGAGAAAGCTGCAGATCGGGCTCTTGTATGGNTCAACAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTGTTTTTAATAAAGGTTATAATTGATTTTATGGGTGGTTTCATACATTGGAATGCTCTTTAACTTCCTTAAGNTCATTTACATTGGTGTAAATGTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4714#0 ACTTGCCCGCAAAATTGCAATAACTCACCATAATATTTCAAAATAATTCGACGGAATTCA 60 consensus_4714#1 ------------AATTGCAATAACTCACCATAATATTTCAAAATAATTCGACGGAATTCA 48 ************************************************ consensus_4714#0 TTCGCTCGCGCCGTCTCCGAAACCGAATCCATTTCCTGATCCAGCAAAGGACACAGAGAG 120 consensus_4714#1 TTCGCTCGCGCCGTCTCCGAAACCGAATCCATTTCCTGATCCAGCAAAGGACACAGAGAG 108 ************************************************************ consensus_4714#0 AGATCCCATCTCGTCCTCGTCGCCTCCGCCTCGTGAGCTCCACTCACCTACCCCACTTCC 180 consensus_4714#1 AGATCCCATCTCGTCCTCGTCGCCTCCGCCTCGTGAGCTCCACTCACCTACCCCACTTCC 168 ************************************************************ consensus_4714#0 TCTCCTCGCTTCGGCCGCGGCCCCAAACCCTAACCCTCCCCGCGGCGATCCCGATGGCCA 240 consensus_4714#1 TCTCCTCGCTTCGGCCGCGGCCCCAAACCCTAACCCTCCCCGCGGCGATCCCGATGGCCA 228 ************************************************************ consensus_4714#0 CCACC---TCCCGCCGATCCCTCCACGCCCTCCTCGGCGGCGGCGCAGTCGCCGACTTGG 297 consensus_4714#1 CCACCACCTCCCGCCGATCCCTCCACGCCCTCCTCGGCGGCGGCGCAGTCGCCGACTTGG 288 ***** **************************************************** consensus_4714#0 TGCTGTGGCGGCGGAGGAACGTGTCCGCGGCGGCCGTGGCGGGCGCCACGGCGGTGTGGT 357 consensus_4714#1 TGCTGTGGCGGCGGAGGAACGTGTCCGCGGCGGCCGTGGCGGGCGCCACGGCGGTGTGGT 348 ************************************************************ consensus_4714#0 TCCTCTTCGAGCGCGCGGGGTACAGCTTCCCGTCAGTCATGGCCAACGCCCTGCTCCTCC 417 consensus_4714#1 TCCTCTTCGAGCGCGCGGGGTACAGCTTCCCGTCAGTCATGGCCAACGCCCTGCTCCTCC 408 ************************************************************ consensus_4714#0 TCGTCGCCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGGCCTCTTCCAC 477 consensus_4714#1 TCGTCGCCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGGCCTCTTCCAC 468 ************************************************************ consensus_4714#0 CACTCCCTAAACTAGAGGTCTCAGATGTGGTTGTTGAGAAAGCTGCAGATCGGGCTCTTG 537 consensus_4714#1 CACTCCCTAAACTAGAGGTCTCAGATGTGGTTGTTGAGAAAGCTGCAGATCGGGCTCTTG 528 ************************************************************ consensus_4714#0 TATGGATCAACAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTG 597 consensus_4714#1 TATGGATCAACAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTG 588 ************************************************************ consensus_4714#0 TTTTTATAAAGGTTATATTGATTTTATGGGTGGTTTCATACATTGGAATGCTCTTCAACT 657 consensus_4714#1 TTTTTATAAAGGTTATATTGATTTTATGGGTGGTTTCATACATTGGAATGCTCTTCAACT 648 ************************************************************ consensus_4714#0 TCCTTACGCTCATTTACATTGGTGTAATGTTTTCTCTGTTAGTTCCACCATTGTATGAGA 717 consensus_4714#1 TCCTTACGCTCATTTACATTGGTGTAATGTTTTCTCTGTTAGTTCCACCATTGTATGAGA 708 ************************************************************ consensus_4714#0 AGTACCAGGACCAAGTCGATGAAAAGATTGGTATGGCGCACAGTGTACTATCAAGGCACT 777 consensus_4714#1 AGTACCAGGACCAAGTCGATGAAAAGATTGGTATGGCGCACAGTGTACTATCAAGGCACT 768 ************************************************************ consensus_4714#0 TAGATACCATCATTAGCAAGACTGGAGAATCAACCAAGCAAAAGAAGACTGAGTAACCGG 837 consensus_4714#1 TAGATACCATCATTAGCAAGACTGGAGAATCAACCAAGCAAAAGAAGACTGAGTAACCGG 828 ************************************************************ consensus_4714#0 TGTTTTTGCTACATTGGG--AACCTCTTTTGTCATATGTGGTTGGTCATGAACCTCGTCA 895 consensus_4714#1 TGTTTTTGCTACATTGGGTGAGCTTCTAAGACGGTTTGAATCTTTTTTACTAGTTCATGG 888 ****************** * * *** * ** * * * ** * consensus_4714#0 GTTACTCTCCATACCTGTGAACCACCACTGGAAATATTCTT--GGATATCGAAGATGT-- 951 consensus_4714#1 TATACTCTAAAT-CCAACAAACCACTAATAGCTTTTGTGTTTCACATATTTAGTATGCTA 947 ****** ** ** ****** * * * * * ** **** * *** consensus_4714#0 CATGTTTGACTGCTGATGTAGTTT--ACATGCACTCTGTTCAATTTGAGAAATGGAATGC 1009 consensus_4714#1 CACATTTCGTTAACATGATAGCATGGACAACATTTTTGTTTAACTCTTGCAATCTCAAG- 1006 ** *** * *** * *** * **** ** * * *** * * consensus_4714#0 TTTGTATATTTTTTCAAGTAACATGACACATGCTGAGGTTTATCATGGGCACATATCTTG 1069 consensus_4714#1 TTTACATAATGTTGCAA------------------------------------------- 1023 *** *** * ** *** consensus_4714#0 TGGATAATGATATATACTTTTCCCCTGAAATCATTTTCTGTAGCCGGCATATACAAATAT 1129 consensus_4714#1 ------------------------------------------------------------ consensus_4714#0 GTTGGTTG 1137 consensus_4714#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||