These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1469 fasta sequence [CCGATGACACCGCTGCCGCGCCAATGCCTCCTCGCACGCTCCTGTCGCCGCTATAGCACATGCTACGGAAGCCGCTACGCCTCCCACCACCTACCTGCAAATCGTGCGCTAGCTGCCGCCGTGCGCCTTCTCTCATCGCAAATCACGTCATCCCACCGCAGATCGCAGCCTCCCCCGCCAGCGTCGAGGTGAGAGCGCGCTTCCTGCCGTCCTACTCCGATGTGAAAAGGATCTGCTTACCCTCCTACCTGGTGTTGTTCCTCAATCTTCGCGGCAGCGTCCTCAGTCGTTGCTTCTCTGCCGGCCGCGGTGGCGCCTGCTCTTCCTTCAATCTCTCGGTTCATAACCCATGGTTCAGACTCCTCAGCCCACCGACAAGCCATCCATCTCCACCAAGAAGATGAAGGACGCTTGATTTGGCCGCCTGGCTTTGATTTGCCCGTCGATCATCCGTTGCAGGGTCAATCGTGGATACAATACTTTTTATCTGAACAAATATTGGCCTTTTGCTTTTTTGTGTGTTGATTTTCAATATGCATTTGTGTTTTATCTTCAAATTATGTGGCGAATTGTAATCCATGGGAATCTCTTAAACTGTTGATAGAATTGCTGATGCTAATTCCCTTTGCGTGAGTTGCAGGTGTTCAGCAAAATCCTGCTTAGGTACTGTCTATTGCAAGCAATTTGATCCATTGTGTTCTCCTTTCTTCACGAATTCAGGGTGCAGTCCAGTTTGCTGACACTAAACACTTCAATGTTGTACATAGTTCATACTCTTTCTCTGCAGGTGGTCACTTATTTCTACCTTTCTCTGTCTACTAAAATGGATAGCGCCACTGGAAGCTCCACACCAAATCCAGCGGATTGAACAGGCCTCCAGCGTTGTTTCCAGGGCGAAGTGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGAGAAGTCCTCCACTTCTCCCTACTATTATGTCAGGTTGACATTGTAGACAACAACTGAATATTTTGCTAAAATCTTGTCATGGTTTACCATGGCATTTCACTGTTTGGTACACTGTTTTTAAGAGCTATTACTACAGTATATATTGGAACCTTGAGAATACTCGACCCCTTGCTGCATATATACATCATGATGACGTCCAATTATGTGTTGCTCAACCCTGAAGAGAAAACCGACAAGATAATTGTGCAGGTCTACATGCTTTTGCTAACTGTGTGTTTGATAATTAGTCATGTCATGGTATAAGTCATTTCTTTGGCACATATACCAGCAGAAATGCAGGTGTTGCTGCTAAGTAACATCAGGGGTGCTAGAGCTTGGTCAAGATGCCTGGTGGCGGAGCTGATGATTTGGAGGCTTGGAGCAAACATATAGTGTGCTGACGATGACCCTGTATGCATGATTCCTATCGAGTAAATTTCTCCTTCGACAACCTTTTATTATCGATGTTTC] [+] EMBL AK108648 [CCGATGACACCGCTGCCGCGCCAATGCCTCCTCGCACGCTCCTGTCGCCGCTATAGCACATGCTACGGAAGCCGCTACGCCTCCCACCACCTACCTGCAAATCGTGCGCTAGCTGCCGCCGTGCGCCTTCTCTCATCGCAAATCACGTCATCCCACCGCAGATCGCAGCCTCCCCCGCCAGCGTCGAGGTGAGAGCGCGCTTCCTGCCGTCCTACTCCGATGTGAAAAGGATCTGCTTACCCTCCTACCTGGTGTTGTTCCTCAATCTTCGCGGCAGCGTCCTCAGTCGTTGCTTCTCTGCCGGCCGCGGTGGCGCCTGCTCTTCCTTCAATCTCTCGGTTCATAACCCATGGTTCAGACTCCTCAGCCCACCGACAAGCCATCCATCTCCACCAAGAAGATGAAGGACGCTTGATTTGGCCGCCTGGCTTTGATTTGCCCGTCGATCATCCGTTGCAGGGTCAATCGTGGATACAATACTTTTTATCTGAACAAATATTGGCCTTTTGCTTTTTTGTGTGTTGATTTTCAATATGCATTTGTGTTTTATCTTCAAATTATGTGGCGAATTGTAATCCATGGGAATCTCTTAAACTGTTGATAGAATTGCTGATGCTAATTCCCTTTGCGTGAGTTGCAGGTGTTCAGCAAAATCCTGCTTAGGTACTGTCTATTGCAAGCAATTTGATCCATTGTGTTCTCCTTTCTTCACGAATTCAGGGTGCAGTCCAGTTTGCTGACACTAAACACTTCAATGTTGTACATAGTTCATACTCTTTCTCTGCAGGTGGTCACTTATTTCTACCTTTCTCTGTCTACTAAAATGGATAGCGCCACTGGAAGCTCCACACCAAATCCAGCGGATTGAACAGGCCTCCAGCGTTGTTTCCAGGGCGAAGTGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGAGAAGTCCTCCACTTCTCCCTACTATTATGTCAGGTTGACATTGTAGACAACAACTGAATATTTTGCTAAAATCTTGTCATGGTTTACCATGGCATTTCACTGTTTGGTACACTGTTTTTAAGAGCTATTACTACAGTATATATTGGAACCTTGAGAATACTCGACCCCTTGCTGCATATATACATCATGATGACGTCCAATTATGTGTTGCTCAACCCTGAAGAGAAAACCGACAAGATAATTGTGCAGGTCTACATGCTTTTGCTAACTGTGTGTTTGATAATTAGTCATGTCATGGTATAAGTCATTTCTTTGGCACATATACCAGCAGAAATGCAGGTGTTGCTGCTAAGTAACATCAGGGGTGCTAGAGCTTGGTCAAGATGCCTGGTGGCGGAGCTGATGATTTGGAGGCTTGGAGCAAACATATAGTGTGCTGACGATGACCCTGTATGCATGATTCCTATCGAGTAAATTTCTCCTTCGACAACCTTTTATTATCGATGTTTC] consensusID : consensus_4720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1025 fasta sequence [CAAATCACTGATTCCCCATCCCCACCGAGCGGACGCGCGATTCTAGCGCAGAAACACCGCCTCTAAGCGCTATCCCTGCCGCTAGACACAGCCCGATGACACCGCTGCCGCGCCATGCCTCCTCGCACGCTCCTGTCGCCGCTATAGCACATGCTACGGAAGCCGCTACGCCTCCCACCACCTACCTGCAAATCGTGCGCTAGCTGCCGCCGTGCGCCTTCTCTCATCGCAAATCACGTCATCCCACCGCAGATCGCAGCCTCCCCCGCCAGCGTCGAGGGTGCAGTCCAGTTTGCTGACACTAAACACTTCAATGTTGTACATAGTTCATACTCTTTCTCTGCAGGTGGTCACTTATTTCTACCTTTCTCTGTCTACTAAAATGGATAGCGCCACTGGAAGCTCCACACCAAATCCAGCGGATTGAACAGGCCTCCAGCGTTGTTTCCA-GGCGAAGTGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGAGAAGTCCTCCACTTCTCCCTACTA-TTATGTCAGGTTGACATTGTAGACAACAACTGAATATTTTGCTAAAATCTTGTCATGGTTTACCATGGCATTTCACTGTTTGGTACACTGTTTTTAAGAGCTATTACTACAGTATATATTGGAACCTTGAGAATACTCGACCCCTTGCTGCATATATACATCATGATGACGTCCAATTATGTGTTGCTCAACCCTGAAGAGAAAACCGACAAGATAATTGTGCAGGTCTACATGCTTTTGCTAACTGTGTGTTTGATAATTAGTCATGTCATGGTATAAGTCATTTCTTTGGCACATATACCAGCAGAAATGCAGGTGTTGCTGCTAAGTAACATCAGGGGTGCTAGAGCTTGGTCAAGATGCCTGGTGGCGGAGCTGATGATTTGGAGGCTTGGAGCAAACATATAGTGTGCTGACGATGACCCTGTAATTTTACCTTTGTGGCATTTTAGACTACCCTCAACTTTTTCAACCACCTAAAAAA] [+] EMBL CF329151 [CAAATCACTGATTCCCCATCCCCACCGAGCGGACGCGCGATTCTAGCGCAGAAACACCGCCTCTAAGCGCTATCCCTGCCGCTAGACACAGCCCGATGACACCGCTGCCGCGCCATGCCTCCTCGCACGCTCCTGTCGCCGCTATAGCACATGCTACGGAAGCCGCTACGCCTCCCACCACCTACCTGCAAATCGTGCGCTAGCTGCCGCCGTGCGCCTTCTCTCATCGCAAATCACGTCATCCCACCGCAGATCGCAGCCTCCCCCGCCAGCGTCGAGGGTGCAGTCCAGTTTGCTGACACTAAACACTTCAATGTTGTACATAGTTCATACTCTTTCTCTGCAGGTGGTCACTTATTTCTACCTTTCTCTGTCTACTAAAATGGATAGCGCCACTGGAAGCTCCACACCAAATCCAGCGGATTGAACAGGCCTCCAGCGTTGTTTCCA GGCGAAGTGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGAGAAGTCCTCCACTTCTCCCTACTA TTATGTCAGGTTGACATTGTAGACAACAACTGAATATTTTGCTAAA ] [-] EMBL CF329152 [ CCAGGGCGAAGTGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGAGAAGTCCTCCACTTCT CCTACTANTTATGTCAGGTTGACATTGTAGACAACAACTGAATATTTTGCTAAAATCTTGTCATGGTTTACCATGGCATTTCACTGTTTGGTACACTGTTTTTAAGAGCTATTACTACAGTATATATTGGAACCTTGAGAATACTCGACCCCTTGCTGCATATATACATCATGATGACGTCCAATTATGTGTTGCTCAACCCTGAAGAGAAAACCGACAAGATAATTGTGCAGGTCTACATGCTTTTGCTAACTGTGTGTTTGATAATTAGTCATGTCATGGTATAAGTCATTTCTTTGGCACATATACCAGCAGAAATGCAGGTGTTGCTGCTAAGTAACATCAGGGGTGCTAGAGCTTGGTCAAGATGCCTGGTGGCGGAGCTGATGATTTGGAGGCTTGGAGCAAACATATAGTGTGCTGACGATGACCCTGTAATTTTACCTTTGTGGCATTTTAGACTACCCTCAACTTTTTCAACCACCTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4720#0 CCGATGACACCGCTGCCGCGCCAATGCCTCCTCGCACGCTCCTGTCGCCGCTATAGCACA 60 consensus_4720#1 ------------------------------------------------------------ consensus_4720#0 TGCTACGGAAGCCGCTACGCCTCCCACCACCTACCTGCAAATCGTGCGCTAGCTGCCGCC 120 consensus_4720#1 ------------------------------------------------------------ consensus_4720#0 GTGCGCCTTCTCTCATCGCAAATCACGTCATCCCACCGCAGATCGCAGCCTCCCCCGCCA 180 consensus_4720#1 ------------------------------------------------------------ consensus_4720#0 GCGTCGAGGTGAGAGCGCGCTTCCTGCCGTCCTACTCCGATGTGAAAAGGATCTGCTTAC 240 consensus_4720#1 ------------------------------------------------------------ consensus_4720#0 CCTCCTACCTGGTGTTGTTCCTCAATCTTCGCGGCAGCGTCCTCAGTCGTTGCTTCTCTG 300 consensus_4720#1 ------------------------------------------------------------ consensus_4720#0 CCGGCCGCGGTGGCGCCTGCTCTTCCTTCAATCTCTCGGTTCATAACCCATGGTTCAGAC 360 consensus_4720#1 ------------------------------------------------------------ consensus_4720#0 TCCTCAGCCCACCGACAAGCCATCCATCTCCACCAAGAAGATGAAGGACGCTTGATTTGG 420 consensus_4720#1 --------------------------------------------CAAATCACTGATTCCC 16 * ***** consensus_4720#0 CCGCCTGGCTTTGATTTGCCCGTCGATCATCCGTTGCAGGGTCAATCGTGGATACAATAC 480 consensus_4720#1 CATCCCCACC--GAGCGGACGCGCGAT--TCTAGCGCAGAAACA-CCGCCTCTA-AGCGC 70 * ** * ** * * **** ** **** ** ** ** * * consensus_4720#0 TTTTTATCTGAACAAATATTGGCCTTTTGCTTTTTTGT-GTGTTGATTTTCAATATGCAT 539 consensus_4720#1 TATCCCTGCCGCTAGACACAGCCCGATGACACCGCTGCCGCGCCATGCCTCCTCGCACGC 130 * * * * * * * ** * * ** * * ** * consensus_4720#0 TTGTGTTTTATCTTCAAATTATGTGGCGAATTGTAATCCATGGGAATCTCTTAAACTGTT 599 consensus_4720#1 TCCTGTCGCCGCTATAGCACATGCTACGGA----AGCCGCTACGCCTCCCACCACCTACC 186 * *** ** * *** ** * * * * * ** * * ** consensus_4720#0 GATAGAATTGCTGATGCTAATTCCCTTTGCGTGAGTTGCAGGTGTTCAGCAAAATCCTGC 659 consensus_4720#1 TGCA-AATCGT--GCGCTAGCTGCCGCCGTGCGCCTT-----CTCTCATCGCAAATCACG 238 * *** * **** * ** * * * ** *** * ** * consensus_4720#0 TTAGGTACTGTCTATTGCAAGCAATTTGATCCATTGTGTTCTCCTTTCTTCACGAATTCA 719 consensus_4720#1 TCAT------CCCACCGCAG------------ATCGCAGCCTCCCCCGCCAGCG--TCGA 278 * * * * *** ** * **** ** * * consensus_4720#0 GGGTGCAGTCCAGTTTGCTGACACTAAACACTTCAATGTTGTACATAGTTCATACTCTTT 779 consensus_4720#1 GGGTGCAGTCCAGTTTGCTGACACTAAACACTTCAATGTTGTACATAGTTCATACTCTTT 338 ************************************************************ consensus_4720#0 CTCTGCAGGTGGTCACTTATTTCTACCTTTCTCTGTCTACTAAAATGGATAGCGCCACTG 839 consensus_4720#1 CTCTGCAGGTGGTCACTTATTTCTACCTTTCTCTGTCTACTAAAATGGATAGCGCCACTG 398 ************************************************************ consensus_4720#0 GAAGCTCCACACCAAATCCAGCGGATTGAACAGGCCTCCAGCGTTGTTTCCAGGGCGAAG 899 consensus_4720#1 GAAGCTCCACACCAAATCCAGCGGATTGAACAGGCCTCCAGCGTTGTTTCCAGG-CGAAG 457 ****************************************************** ***** consensus_4720#0 TGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGA 959 consensus_4720#1 TGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGA 517 ************************************************************ consensus_4720#0 GAAGTCCTCCACTTCTCCCTACTATTATGTCAGGTTGACATTGTAGACAACAACTGAATA 1019 consensus_4720#1 GAAGTCCTCCACTTCTCCCTACTATTATGTCAGGTTGACATTGTAGACAACAACTGAATA 577 ************************************************************ consensus_4720#0 TTTTGCTAAAATCTTGTCATGGTTTACCATGGCATTTCACTGTTTGGTACACTGTTTTTA 1079 consensus_4720#1 TTTTGCTAAAATCTTGTCATGGTTTACCATGGCATTTCACTGTTTGGTACACTGTTTTTA 637 ************************************************************ consensus_4720#0 AGAGCTATTACTACAGTATATATTGGAACCTTGAGAATACTCGACCCCTTGCTGCATATA 1139 consensus_4720#1 AGAGCTATTACTACAGTATATATTGGAACCTTGAGAATACTCGACCCCTTGCTGCATATA 697 ************************************************************ consensus_4720#0 TACATCATGATGACGTCCAATTATGTGTTGCTCAACCCTGAAGAGAAAACCGACAAGATA 1199 consensus_4720#1 TACATCATGATGACGTCCAATTATGTGTTGCTCAACCCTGAAGAGAAAACCGACAAGATA 757 ************************************************************ consensus_4720#0 ATTGTGCAGGTCTACATGCTTTTGCTAACTGTGTGTTTGATAATTAGTCATGTCATGGTA 1259 consensus_4720#1 ATTGTGCAGGTCTACATGCTTTTGCTAACTGTGTGTTTGATAATTAGTCATGTCATGGTA 817 ************************************************************ consensus_4720#0 TAAGTCATTTCTTTGGCACATATACCAGCAGAAATGCAGGTGTTGCTGCTAAGTAACATC 1319 consensus_4720#1 TAAGTCATTTCTTTGGCACATATACCAGCAGAAATGCAGGTGTTGCTGCTAAGTAACATC 877 ************************************************************ consensus_4720#0 AGGGGTGCTAGAGCTTGGTCAAGATGCCTGGTGGCGGAGCTGATGATTTGGAGGCTTGGA 1379 consensus_4720#1 AGGGGTGCTAGAGCTTGGTCAAGATGCCTGGTGGCGGAGCTGATGATTTGGAGGCTTGGA 937 ************************************************************ consensus_4720#0 GCAAACATATAGTGTGCTGACGATGACCCTGTATGCATGATTCCTATCGAGTAAATTTCT 1439 consensus_4720#1 GCAAACATATAGTGTGCTGACGATGACCCTGTA---ATTTTACCTTTGTGGCATTTTAGA 994 ********************************* ** * *** * * * ** consensus_4720#0 CCTTCGACAACCTTTT--ATTATCGATGTTTC 1469 consensus_4720#1 CTACCCTCAACTTTTTCAACCACCTAAAAAA- 1025 * * **** **** * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||