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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 811 fasta sequence
[GAAGTACAACTCTGATTTATTGGGAATTCAATGTTTAAAAAAATGTACAAAGGTATTCTAGCAACAATTACATGCTAAAAGGGACCATGATATCGTTAAGTATAACGATATAGGGTATTCTAGCAACAAGTACATGCCACAAATGACCCATATTTTGTCTGTTGTCAGAAAGAATTACAACAATCGGAGGCGACATGCCTCACACCAACTATTAAATTTTTCCTAACAACACTGTACAAAGGGTTCCCAGCAGCAACTACAAGCCAGGAGGACCCAAGTTTAGTGCAAAGCATCAAGAATACAACCATCGGAGGAGACATGCTTTAGATCTATAATTGAATTACTCCCACTGAACCCGAACCCAAAGGTTCCATCATCATATAGCCAAATTCTTCCCTCCACATTCCTCATATCATCTAAGGGAGCTGACAGATGATGATCGACAACATCATAACTGGAATTGATGCACAAGATCCGAGAGATAGCTCTGTTCTCAGTTGCTGCATGATCGGAATCCACGCCTTGAATATGTTCACGTCTAATATAATGATCCAGCTCCTTCTCAGAGAATGGTTGTTCAAGAAATGTTGTATTTGTAGTCCAAAAGATAGGGGTGAACCCTGAGTTTTGACCCCTTGTATCACTAACTTGTCGACAAGTGATACCTCCAATGTCATCATAGGTGACAAGGTAAAATTCAAGAGTCCTACTCTCACTTATTCCCTTCCACAGCCCCTGGAGAGGCCGCGCCTCCGTCGGCTCGGCATCCGCAATCCTCACGAAGTGCTCGGCCTCCATTGCACGGCCTCTT]
[+] EMBL CB650219 [GAAGTACAACTCTGATTTATTGGGAATTCAATGTTTAAAAAAATGTACAAAGGTATTCTAGCAACAATTACATGCTAAAAGGGACCATGATATCGTTAAGTATAACGATATAGGGTATTCTAGCAACAAGTACATGCCACAAATGACCCATATTTTGTCTGTTGTCAGAAAGAATTACAACAATCGGAGGCGACATGCCTCACACCAACTATTAAATTTTTCCTAACAACACTGTACAAAGGGTTCCCAGCAGCAACTACAAGCCAGGAGGACCCAAGTTTAGTGCAAAGCATCAAGAATACAACCATCGGAGGAGACATGCTTTAGATCTATAATTGAATTACTCCCACTGAACCCGAACCCAAAGGTTCCATCATCATATAGCCAAATTCTTCCCTCCACATTCCTCATATCATCTAAGGGAGCTGACAGATGATGATCGACAACATCATAACTGGAATTGATGCACAAGATCCGAGAGATAGCTCTGTTCTCAGTTGCTGCATGATCGGAATCCACGCCTTGAATATGTTCACGTCTAATATAATGATCCAGCTCCTTCTCAGAGAATGGTTGTTCAAGAAATGTTGTATTTGTAGTCCAAAAGATAGGGGTGAACCCTGAGTTTTGACCCCTTGTATCACTAACTTGTCGACAAGTGATACCTCCAATGTCATCATAGGTGACAAGGTAAAATTCAAGAGTCCTACTCTCACTTATTCCCTTCCACAGCCCCTGGAGAGGCCGCGCCTCCGTCGGCTCGGCATCCGCAATCCTCACGAAGTGCTCGGCCTCCATTGCACGGCCTCTT]
[-] EMBL CA765132 [ ACAACTCTGATTTATTGGGAATTCAATGTTTAAAAAAATGTACAAAGGTATTCTAGCAACAATTACATGCTAGAAGGGACCACGGTATCGTTAAGTATAACGATATAGGGTATTCTAGCAACAAGTACATGCCAGAAAGGACCCATATTTTGTCTGTTGTCAGAAAGAATTACAACAATCGGAGGCGACATGCCTCACACCAACTATTAAATTTTTC ]
consensusID : consensus_4741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence
[TAGTGCAAAGCATCAAGAATACAACCATCGGAGGAGACATGCTTTAGATCTATAATTGAATTACTCCCACTGAACCCGAACCCAAAGGTTCCATCATCATATAGCCAAATTCTTCCCTCCACATTCCTCATATCATCTAAGGGAGCTGACAGATGATGATCGACAACATCATAACTGGAATTGATGCACAAGATCCGAGAGATAGCTCTGTTCTCAGTTGCTGCATGATCGGAATCCACGCCTTGAATATGTTCACGTCTAATATAATGATCCAGCTCCTTCTCAGAGAATGGTTGTTCAAGAAATGTTGTATTTGTAGTCCAAAAGATAGGGGTGAACCCTGAGTTTTGACCCCTTGTATCACTAACTTGTCGACAAGTGATACCTCCAATGTCATCATAGGTGACAAGGTAAAATTCAAGAGTCCTACTCTCACTTATTCCCTTTTGATCTTTCAAGCTATGCCATTAAAAGGGGGCAAAGGTACACAAAAATGAGCATATGCCACCCAAGCAATTTGTGCAATATCTTCATTTAGCGGCAATTTTGCCACGAGAAACCAAATTAGCTGCAGAAGCTACTCCGCAGGAACTCCATGATGGCGAGTAGTGGTAGTAGTATATCATGACAATAAACCATTCCAATGAAAACGCTAGCGCTCCGACCATATGCAACAACAAAGGAGTAAGCTCTGTGTGCAAGGGAAGCACCTTCCACAGCCCCTGGAGAGGCCGCGCCTCCGTCGGCTCGGCATCCGCAATCCTCACG]
[-] EMBL CB657977 [TAGTGCAAAGCATCAAGAATACAACCATCGGAGGAGACATGCTTTAGATCTATAATTGAATTACTCCCACTGAACCCGAACCCAAAGGTTCCATCATCATATAGCCAAATTCTTCCCTCCACATTCCTCATATCATCTAAGGGAGCTGACAGATGATGATCGACAACATCATAACTGGAATTGATGCACAAGATCCGAGAGATAGCTCTGTTCTCAGTTGCTGCATGATCGGAATCCACGCCTTGAATATGTTCACGTCTAATATAATGATCCAGCTCCTTCTCAGAGAATGGTTGTTCAAGAAATGTTGTATTTGTAGTCCAAAAGATAGGGGTGAACCCTGAGTTTTGACCCCTTGTATCACTAACTTGTCGACAAGTGATACCTCCAATGTCATCATAGGTGACAAGGTAAAATTCAAGAGTCCTACTCTCACTTATTCCCTTTTGATCTTTCAAGCTATGCCATTAAAAGGGGGCAAAGGTACACAAAAATGAGCATATGCCACCCAAGCAATTTGTGCAATATCTTCATTTAGCGGCAATTTTGCCACGAGAAACCAAATTAGCTGCAGAAGCTACTCCGCAGGAACTCCATGATGGCGAGTAGTGGTAGTAGTATATCATGACAATAAACCATTCCAATGAAAACGCTAGCGCTCCGACCATATGCAACAACAAAGGAGTAAGCTCTGTGTGCAAGGGAAGCACCTTCCACAGCCCCTGGAGAGGCCGCGCCTCCGTCGGCTCGGCATCCGCAATCCTCACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4741#0 GAAGTACAACTCTGATTTATTGGGAATTCAATGTTTAAAAAAATGTACAAAGGTATTCTA 60
consensus_4741#1 ------------------------------------------------------------
consensus_4741#0 GCAACAATTACATGCTAAAAGGGACCATGATATCGTTAAGTATAACGATATAGGGTATTC 120
consensus_4741#1 ------------------------------------------------------------
consensus_4741#0 TAGCAACAAGTACATGCCACAAATGACCCATATTTTGTCTGTTGTCAGAAAGAATTACAA 180
consensus_4741#1 ------------------------------------------------------------
consensus_4741#0 CAATCGGAGGCGACATGCCTCACACCAACTATTAAATTTTTCCTAACAACACTGTACAAA 240
consensus_4741#1 ------------------------------------------------------------
consensus_4741#0 GGGTTCCCAGCAGCAACTACAAGCCAGGAGGACCCAAGTTTAGTGCAAAGCATCAAGAAT 300
consensus_4741#1 ----------------------------------------TAGTGCAAAGCATCAAGAAT 20
********************
consensus_4741#0 ACAACCATCGGAGGAGACATGCTTTAGATCTATAATTGAATTACTCCCACTGAACCCGAA 360
consensus_4741#1 ACAACCATCGGAGGAGACATGCTTTAGATCTATAATTGAATTACTCCCACTGAACCCGAA 80
************************************************************
consensus_4741#0 CCCAAAGGTTCCATCATCATATAGCCAAATTCTTCCCTCCACATTCCTCATATCATCTAA 420
consensus_4741#1 CCCAAAGGTTCCATCATCATATAGCCAAATTCTTCCCTCCACATTCCTCATATCATCTAA 140
************************************************************
consensus_4741#0 GGGAGCTGACAGATGATGATCGACAACATCATAACTGGAATTGATGCACAAGATCCGAGA 480
consensus_4741#1 GGGAGCTGACAGATGATGATCGACAACATCATAACTGGAATTGATGCACAAGATCCGAGA 200
************************************************************
consensus_4741#0 GATAGCTCTGTTCTCAGTTGCTGCATGATCGGAATCCACGCCTTGAATATGTTCACGTCT 540
consensus_4741#1 GATAGCTCTGTTCTCAGTTGCTGCATGATCGGAATCCACGCCTTGAATATGTTCACGTCT 260
************************************************************
consensus_4741#0 AATATAATGATCCAGCTCCTTCTCAGAGAATGGTTGTTCAAGAAATGTTGTATTTGTAGT 600
consensus_4741#1 AATATAATGATCCAGCTCCTTCTCAGAGAATGGTTGTTCAAGAAATGTTGTATTTGTAGT 320
************************************************************
consensus_4741#0 CCAAAAGATAGGGGTGAACCCTGAGTTTTGACCCCTTGTATCACTAACTTGTCGACAAGT 660
consensus_4741#1 CCAAAAGATAGGGGTGAACCCTGAGTTTTGACCCCTTGTATCACTAACTTGTCGACAAGT 380
************************************************************
consensus_4741#0 GATACCTCCAATGTCATCATAGGTGACAAGGTAAAATTCAAGAGTCCTACTCTCACTTAT 720
consensus_4741#1 GATACCTCCAATGTCATCATAGGTGACAAGGTAAAATTCAAGAGTCCTACTCTCACTTAT 440
************************************************************
consensus_4741#0 TCCCTT-------------CCACAGCCCCTGGAGAGGCCGCGCCTCCGTCGGCTCG-GCA 766
consensus_4741#1 TCCCTTTTGATCTTTCAAGCTATGCCATTAAAAGGGGGCAAAGGTACACAAAAATGAGCA 500
****** * * * ** ** * * * * ***
consensus_4741#0 TCCGCAATCCTCACGAAGTGCTCGGC--CTCCATTGCACGGCCTCTT------------- 811
consensus_4741#1 TATGCCACCCAAGCAATTTGTGCAATATCTTCATTTAGCGGCAATTTTGCCACGAGAAAC 560
* ** * ** * * ** * ** **** **** **
consensus_4741#0 ------------------------------------------------------------
consensus_4741#1 CAAATTAGCTGCAGAAGCTACTCCGCAGGAACTCCATGATGGCGAGTAGTGGTAGTAGTA 620
consensus_4741#0 ------------------------------------------------------------
consensus_4741#1 TATCATGACAATAAACCATTCCAATGAAAACGCTAGCGCTCCGACCATATGCAACAACAA 680
consensus_4741#0 ------------------------------------------------------------
consensus_4741#1 AGGAGTAAGCTCTGTGTGCAAGGGAAGCACCTTCCACAGCCCCTGGAGAGGCCGCGCCTC 740
consensus_4741#0 ----------------------------
consensus_4741#1 CGTCGGCTCGGCATCCGCAATCCTCACG 768
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||