cluster # 4753

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4753 cluster # 4753 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4753#0 length = 804 sequences # 2

consensus_4753#1 length = 307 sequences # 1

consensusID : consensus_4753#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 804
fasta sequence

                              [CTTTTTTTTTTAGCATAGAGTGATACTCTCATAAATGAATTCAGTTCAACATTTTTTATTACCAATAAATAAATAAAACTTATGACT-GGTTGTAACTTGTAACTAGGAAATGCATTACAACAGAAGACCAAAAAAAAAAAACACATCAAAGCAGGGTACATCAATCATTTGAACTTTTGAAGGCCACATCACAACAAATTAAGTAAAGCACAAAGAAACCCAGATGAGTTTTTCTGTGGGCCGACAGCCCGACATCCTACGAGGCCTGCGTGTCCACCTTTGGGCCGAACACCACGTCGGCGCCGTACCGGAGCACCTCGCCGTCGCGGCAGATCCTGGCCGTCACCGCCGCCGGCAGCGTCACCGCCACGTCCCTCGCGGACTCGCCCTCGGCCGAAGGCAGGACGATCACGAGACCCTCGCCGCTCGCCCCGCCGACGCGGCACGCGGCGCGCGCCGGCGCCGCCCCGGCCGCGAACTCCGCGCCGTAGAGGGGCACGTGGTCGAGCGCCATGCACGTCAGCTCCGGCCCGTACATCTGGAACGGCTCGCCGCCGGCGGCCTGGCGCGTGTGCAGCCACTCGATGGCGGGCCACAGCTCCTCCTCCGGCACGGCGGCCGCGCGCCGCTCCACCGCGGCCGCCACGCTCGCCAGCCCCGACGACAGGTCGGCGCGCGCCGTCGCGAAGTGCACCGCGGTGCCGTAGTACCCCGTCGGCAGCGGCGCCTGCATCCGCTTCCGGAAGTCCAGCGCGAGCGTCAGCTCCCTCTCCTCGGCCGCGCCGCCGCCGGCGGCGGCGTCNG]

[+] EMBL CB682956             [CTTTTTTTTTTAGCATAGAGTGATACTCTCATAAATGAATTCAGTTCAACATTTTTTATTACCAATAAATAAATAAAACTTATGACT GGTTGTAACTTGTAACTAGGAAATGCATTACAACAGAAGACCAAAAAAAAAAAACACATCAAAGCAGGGTACATCAATCATTTGAACTTTTGAAGGCCACATCACAACAAATTAAGTAAAGCACAAAGAAACCCAGATGAGTTTTTCTGTGGGCCGACAGCCCGACATCCTACGAGGCCTGCGTGTCCACCTTTGGGCCGAACACCACGTCGGCGCCGTACCGGAGCACCTCGCCGTCGCGGCAGATCCTGGCCGTCACCGCCGCCGGCAGCGTCACCGCCACGTCCCTCGCGGACTCGCCCTCGGCCGAAGGCAGGACGATCACGAGACCCTCGCCGCTCGCCCCGCCGACGCGGCACGCGGCGCGCGCCGGCGCCGCCCCGGCCGCGAACTCCGCGCCGTAGAGGGGCACGTGGTCGAGCGCCATGCACGTCAGCTCCGGCCCGTACATCTGGAACGGCTCGCCGCCGGCGGCCTGGCGCGTGTGCAGCCACTCGATGGCGGGCCACAGCTCCTCCTCCGGCACGGCGGCCGCGCGCCGCTCCACCGCGGCCGCCACGCTCGCCAGCCCCGACGACAGGTCGGCGCGCGCCGTCGCGAAGTGCACCGCGGTGCCGTAGTACCCCGTCGGCAGCGGCGCCTGCATCCGCTTCCGGAAGTCCAGCGCGAGCGTCA                                          ]
[+] EMBL CB648254             [                                                                               TTATGACTGGGTTGTAACTTGTAACTAGGAAATGCATTACAACAGAAGACC AAAAAAAAAAACACATCAAAGCAGGGTACATCAATCATTTGAACTTTTGAAGGCCACATCACAACAAATTAAGTAAAGCACAAAGAAACCCAGATGAGTTTTTCTGTGGGCCGACAGCCCGACATCCTACGAGGCCTGCGTGTCCACCTTTGGGCCGAACACCACGTCGGCGCCGTACCGGAGCACCTCGCCGTCGCGGCAGATCCTGGCCGTCACCGCCGCCGGCAGCGTCACCGCCACGTCCCTCGCGGACTCGCCCTCGGCCGAAGGCAGGACGATCACGAGACCCTCGCCGCTCGCCCCGCCGACGCGGCACGCGGCGCGCGCCGGCGCCGCCCCGGCCGCGAACTCCGCGCCGTAGAGGGGCACGTGGTCGAGCGCCATGCACGTCAGCTCCGGCCCGTACATCTGGAACGGCTCGCCGCCGGCGGCCTGGCGCGTGTGCAGCCACTCGATGGCGGGCCACAGCTCCTCCTCCGGCACGGCGGCCGCGCGCCGCTCCACCGCGGCCGCCACGCTCGCCAGCCCCGACGACAGGTCGGCGCGCGCCGTCGCGAAGTGCACCGCGGTGCCGTAGTACCCCGTCGGCAGCGGCGCCTGCATCCGCTTCCGGAAGTCCAGCGCGAGCGTCAGCTCCCTCTCCTCGGCCGCGCCGCCGCCGGCGGCGGCGTCNG]




>consensus_4753#0
CTTTTTTTTTTAGCATAGAGTGATACTCTCATAAATGAATTCAGTTCAACATTTTTTATT
ACCAATAAATAAATAAAACTTATGACTGGTTGTAACTTGTAACTAGGAAATGCATTACAA
CAGAAGACCAAAAAAAAAAAACACATCAAAGCAGGGTACATCAATCATTTGAACTTTTGA
AGGCCACATCACAACAAATTAAGTAAAGCACAAAGAAACCCAGATGAGTTTTTCTGTGGG
CCGACAGCCCGACATCCTACGAGGCCTGCGTGTCCACCTTTGGGCCGAACACCACGTCGG
CGCCGTACCGGAGCACCTCGCCGTCGCGGCAGATCCTGGCCGTCACCGCCGCCGGCAGCG
TCACCGCCACGTCCCTCGCGGACTCGCCCTCGGCCGAAGGCAGGACGATCACGAGACCCT
CGCCGCTCGCCCCGCCGACGCGGCACGCGGCGCGCGCCGGCGCCGCCCCGGCCGCGAACT
CCGCGCCGTAGAGGGGCACGTGGTCGAGCGCCATGCACGTCAGCTCCGGCCCGTACATCT
GGAACGGCTCGCCGCCGGCGGCCTGGCGCGTGTGCAGCCACTCGATGGCGGGCCACAGCT
CCTCCTCCGGCACGGCGGCCGCGCGCCGCTCCACCGCGGCCGCCACGCTCGCCAGCCCCG
ACGACAGGTCGGCGCGCGCCGTCGCGAAGTGCACCGCGGTGCCGTAGTACCCCGTCGGCA
GCGGCGCCTGCATCCGCTTCCGGAAGTCCAGCGCGAGCGTCAGCTCCCTCTCCTCGGCCG
CGCCGCCGCCGGCGGCGGCGTCNG

consensusID : consensus_4753#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTAAATGAATTCAGTTCAACATTTTTTATTACCAATAAATAAATAAAACTTATGACTGGTTGTAACTTGTAACTAGGAAATGCATTACAACAGAAGACCAAAAAAAAAAACACATCAAAGCAGGGTACATCAATCATTTGAACTTTTGAAGGCCACATCACAACAAATTAAGTAAAGCACAAAGAAACCCAGATGAGTTTTTCTGTGGGCCGACAGCCCGACATCCTACGAGGCCTGCGTGTCCACCTTTGGGCCGAACACCACGTCGGCGCCGTACCGGAGCACCTCGC]

[-] EMBL AU164948             [TTTTTTTTTTTTTTTTTTTAAATGAATTCAGTTCAACATTTTTTATTACCAATAAATAAATAAAACTTATGACTGGTTGTAACTTGTAACTAGGAAATGCATTACAACAGAAGACCAAAAAAAAAAACACATCAAAGCAGGGTACATCAATCATTTGAACTTTTGAAGGCCACATCACAACAAATTAAGTAAAGCACAAAGAAACCCAGATGAGTTTTTCTGTGGGCCGACAGCCCGACATCCTACGAGGCCTGCGTGTCCACCTTTGGGCCGAACACCACGTCGGCGCCGTACCGGAGCACCTCGC]




>consensus_4753#1
TTTTTTTTTTTTTTTTTTTAAATGAATTCAGTTCAACATTTTTTATTACCAATAAATAAA
TAAAACTTATGACTGGTTGTAACTTGTAACTAGGAAATGCATTACAACAGAAGACCAAAA
AAAAAAACACATCAAAGCAGGGTACATCAATCATTTGAACTTTTGAAGGCCACATCACAA
CAAATTAAGTAAAGCACAAAGAAACCCAGATGAGTTTTTCTGTGGGCCGACAGCCCGACA
TCCTACGAGGCCTGCGTGTCCACCTTTGGGCCGAACACCACGTCGGCGCCGTACCGGAGC
ACCTCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4753#0      CTTTTTTTTTTAGCATAGAGTGATACTCTCATAAATGAATTCAGTTCAACATTTTTTATT 60
consensus_4753#1      -TTTTTTTTTT------------TTTTTTTTTAAATGAATTCAGTTCAACATTTTTTATT 47
                       **********            *  * *  *****************************

consensus_4753#0      ACCAATAAATAAATAAAACTTATGACTGGTTGTAACTTGTAACTAGGAAATGCATTACAA 120
consensus_4753#1      ACCAATAAATAAATAAAACTTATGACTGGTTGTAACTTGTAACTAGGAAATGCATTACAA 107
                      ************************************************************

consensus_4753#0      CAGAAGACCAAAAAAAAAAAACACATCAAAGCAGGGTACATCAATCATTTGAACTTTTGA 180
consensus_4753#1      CAGAAGACCAAAAAAAAAAA-CACATCAAAGCAGGGTACATCAATCATTTGAACTTTTGA 166
                      ******************** ***************************************

consensus_4753#0      AGGCCACATCACAACAAATTAAGTAAAGCACAAAGAAACCCAGATGAGTTTTTCTGTGGG 240
consensus_4753#1      AGGCCACATCACAACAAATTAAGTAAAGCACAAAGAAACCCAGATGAGTTTTTCTGTGGG 226
                      ************************************************************

consensus_4753#0      CCGACAGCCCGACATCCTACGAGGCCTGCGTGTCCACCTTTGGGCCGAACACCACGTCGG 300
consensus_4753#1      CCGACAGCCCGACATCCTACGAGGCCTGCGTGTCCACCTTTGGGCCGAACACCACGTCGG 286
                      ************************************************************

consensus_4753#0      CGCCGTACCGGAGCACCTCGCCGTCGCGGCAGATCCTGGCCGTCACCGCCGCCGGCAGCG 360
consensus_4753#1      CGCCGTACCGGAGCACCTCGC--------------------------------------- 307
                      *********************                                       

consensus_4753#0      TCACCGCCACGTCCCTCGCGGACTCGCCCTCGGCCGAAGGCAGGACGATCACGAGACCCT 420
consensus_4753#1      ------------------------------------------------------------
                                                                                  

consensus_4753#0      CGCCGCTCGCCCCGCCGACGCGGCACGCGGCGCGCGCCGGCGCCGCCCCGGCCGCGAACT 480
consensus_4753#1      ------------------------------------------------------------
                                                                                  

consensus_4753#0      CCGCGCCGTAGAGGGGCACGTGGTCGAGCGCCATGCACGTCAGCTCCGGCCCGTACATCT 540
consensus_4753#1      ------------------------------------------------------------
                                                                                  

consensus_4753#0      GGAACGGCTCGCCGCCGGCGGCCTGGCGCGTGTGCAGCCACTCGATGGCGGGCCACAGCT 600
consensus_4753#1      ------------------------------------------------------------
                                                                                  

consensus_4753#0      CCTCCTCCGGCACGGCGGCCGCGCGCCGCTCCACCGCGGCCGCCACGCTCGCCAGCCCCG 660
consensus_4753#1      ------------------------------------------------------------
                                                                                  

consensus_4753#0      ACGACAGGTCGGCGCGCGCCGTCGCGAAGTGCACCGCGGTGCCGTAGTACCCCGTCGGCA 720
consensus_4753#1      ------------------------------------------------------------
                                                                                  

consensus_4753#0      GCGGCGCCTGCATCCGCTTCCGGAAGTCCAGCGCGAGCGTCAGCTCCCTCTCCTCGGCCG 780
consensus_4753#1      ------------------------------------------------------------
                                                                                  

consensus_4753#0      CGCCGCCGCCGGCGGCGGCGTCNG 804
consensus_4753#1      ------------------------