These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4778#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1054 fasta sequence [GCGCGCTTTTCGGCGTGCCGGATGAGGCGCGGGACGCCGACCGTTTCCCCTCCGCCATAGCCCGGCGGTTCGTCTCGGCCTTCCGGAGCAGCGAGCTTCTCGCCGTGCGGAGCTGCGTGGAGTTCGAGCCCGAGTCGGTGCCTCTCCTGTCGAACATCTTCGGCAAGCCGGTCGTCCCCATCGGCCTTCTCCCGCCGCCGCAGGTTGACGGCGACGGCGACGGCGACACAGCTCTCATGTCCTCGTGGCTCGACAGGCAGCCGCCCAAGTCCGTCGTCTACGTCGCGCTCGGGAGCGAGGCGCCGCTGACCGCGGAGCAGCGGCGCGAGCTGGCGCTCGGGCTGGAGCTCTCCGGCGCGCCCTTCCTCTGGGCCCTGAGGAAGCCTCACGGCGGCGACGACGACGGCGGCCTCCTGCCTCCGGGATTCGAGGAGCGGACGCGCGGGCGCGGGATGGTGAAGACGGAGTGGGTGCCCCAGCTCAAGATCCTGGCGCACGCCGCCGTGGGCGCCTTCCTGACGCACTGCGGCCACAGCTCCGTCATCGAGGGGCTCCGGTTCGGCCATCCTCTCGTCATGCTGCCACTGTTCCTCGACCAGTTCACTAACGCGAGCTACTTGGAAGGGGCGAGAGGGGTTGGGGTGCAGGTGGCCA-GGGATGGCGAGCACGGCGGCGCCTTCGACCGGGACGGCGTCGCCGCAGCCGTCCGGGCCGCCGTGGTGGATGAAGAGAGCA-AGAAAGCGCTCGCCGCCAACGCCGGGAAGATGGGGGAGTGGTGCCGACACGGAGTGTCACGAGAGGTGCATCGACGCTTTCATTCAGCAGCTCAGGTCCTATACAACGACAAGGACTGGTTATTAGTACGTACCTCCACTTGGACACATCATCCCTGCCTAAGATTCGCATGTCCGTTTTATTTGTTGTTCCATCAAAGATTTGATTCGTTTAGTATATTCACCATGTTTTACTATGTACGGATCAATGTTGCAGTGAATTGAAACACTTCTTTTGCAATAAATTACCCATATATTATGGATATTATGGAAAAAAAAAA] [+] EMBL CB684577 [GCGCGCTTTTCGGCGTGCCGGATGAGGCGCGGGACGCCGACCGTTTCCCCTCCGCCATAGCCCGGCGGTTCGTCTCGGCCTTCCGGAGCAGCGAGCTTCTCGCCGTGCGGAGCTGCGTGGAGTTCGAGCCCGAGTCGGTGCCTCTCCTGTCGAACATCTTCGGCAAGCCGGTCGTCCCCATCGGCCTTCTCCCGCCGCCGCAGGTTGACGGCGACGGCGACGGCGACACAGCTCTCATGTCCTCGTGGCTCGACAGGCAGCCGCCCAAGTCCGTCGTCTACGTCGCGCTCGGGAGCGAGGCGCCGCTGACCGCGGAGCAGCGGCGCGAGCTGGCGCTCGGGCTGGAGCTCTCCGGCGCGCCCTTCCTCTGGGCCCTGAGGAAGCCTCACGGCGGCGACGACGACGGCGGCCTCCTGCCTCCGGGATTCGAGGAGCGGACGCGCGGGCGCGGGATGGTGAAGACGGAGTGGGTGCCCCAGCTCAAGATCCTGGCGCACGCCGCCGTGGGCGCCTTCCTGACGCACTGCGGCCACAGCTCCGTCATCGAGGGGCTCCGGTTCGGCCATCCTCTCGTCATGCTGCCACTGTTCCTCGACCAGTTCACTAACGCGAGCTACTTGGAAGGGGCGAGAGGGGTTGGGGTGCAGGTGGCCA GGGATGGCGAGCACGGCGGCGCCTTCGACCGGGACGGCGTCGCCGCAGCCGTCCGGGCCGCCGTGGTGGATGAAGAGAGCA AGAAAGCGCTCGCCGC ] [+] EMBL BI811822 [ CCGTCATCGAGGGGCT CGGTTCGGCCATCCTCTCGTCATGCTGCCACTGTTCCTCGACCAGTTCACGAACGCGAGCTACTTGGAAGGGGCGAGAGGGGTTGGGGTTCAGGTGGCCACGGGATGGCGAGCACGGCAGCGCCTTCGACCGGGACGGCGTCGCCGCAGCCGTCC GGCC CCGTGGTGGATGAAGAGAGCACAGAAGGCGCTCGCCGCCAACGCCGGGAAGATGGGGGAGTGGTGCCGACACGGAGTGTCACGAGAGGTGCATCGACGCTTTCATTCAGCAGCTCAGGTCCTATACAACGACAAGGACTGGTTATTAGTACGTACCTCCACTTGGACACATCATCCCTGCCTAAGATTCGCATGTCCGTTTTATTTGTTGTTCCATCAAAGATTTGATTCGTTTAGTATATTCACCATGTTTTACTATGTACGGATCAATGTTGCAGTGAATTGAAACACTTCTTTTGCAATAAATTACCCATATATTATGGATATTATGGAAAAAAAAAA] consensusID : consensus_4778#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [CAGCTCTCATGTCCTCGTGGCTCGACAGGCAGCCGCCAAGTCCGTCGTCTACGTCGCGCTCGGGAGCAGGCCCGCTGACCGCGACCGAGCACGGCTGGCCCTCGGCTGGAGCTCTCCGGCCCCCTTCCTCTGGCCCTGAGGAAGCCTCACGGCGCGACGAGACGGCGCCTCCTCCGG] [+] EMBL AA749993 [CAGCTCTCATGTCCTCGTGGCTCGACAGGCAGCCGCCAAGTCCGTCGTCTACGTCGCGCTCGGGAGCAGGCCCGCTGACCGCGACCGAGCACGGCTGGCCCTCGGCTGGAGCTCTCCGGCCCCCTTCCTCTGGCCCTGAGGAAGCCTCACGGCGCGACGAGACGGCGCCTCCTCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4778#0 GCGCGCTTTTCGGCGTGCCGGATGAGGCGCGGGACGCCGACCGTTTCCCCTCCGCCATAG 60 consensus_4778#1 ------------------------------------------------------------ consensus_4778#0 CCCGGCGGTTCGTCTCGGCCTTCCGGAGCAGCGAGCTTCTCGCCGTGCGGAGCTGCGTGG 120 consensus_4778#1 ------------------------------------------------------------ consensus_4778#0 AGTTCGAGCCCGAGTCGGTGCCTCTCCTGTCGAACATCTTCGGCAAGCCGGTCGTCCCCA 180 consensus_4778#1 ------------------------------------------------------------ consensus_4778#0 TCGGCCTTCTCCCGCCGCCGCAGGTTGACGGCGACGGCGACGGCGACACAGCTCTCATGT 240 consensus_4778#1 ------------------------------------------------CAGCTCTCATGT 12 ************ consensus_4778#0 CCTCGTGGCTCGACAGGCAGCCGCCCAAGTCCGTCGTCTACGTCGCGCTCGGGAGCGAGG 300 consensus_4778#1 CCTCGTGGCTCGACAGGCAGCCGCC-AAGTCCGTCGTCTACGTCGCGCTCGGGAGC-AGG 70 ************************* ****************************** *** consensus_4778#0 CGCCGCTGACCGCGGAGCAGCGGCGCGAGCTGGCGCTCGGGCTGGAGCTCTCCGGCGCGC 360 consensus_4778#1 C-CCGCTGACCGCGACCGAGCAC----GGCTGGCCCTCGG-CTGGAGCTCTCCGGCC--C 122 * ************ *** ****** ***** *************** * consensus_4778#0 CCTTCCTCTGGGCCCTGAGGAAGCCTCACGGCGGCGACGACGACGGCGGCCTCCTGCCTC 420 consensus_4778#1 CCTTCCTCTGG-CCCTGAGGAAGCCTCACGGCG-CGACGA-GACGGCGCCT-----CCTC 174 *********** ********************* ****** ******* * **** consensus_4778#0 CGGGATTCGAGGAGCGGACGCGCGGGCGCGGGATGGTGAAGACGGAGTGGGTGCCCCAGC 480 consensus_4778#1 CGG--------------------------------------------------------- 177 *** consensus_4778#0 TCAAGATCCTGGCGCACGCCGCCGTGGGCGCCTTCCTGACGCACTGCGGCCACAGCTCCG 540 consensus_4778#1 ------------------------------------------------------------ consensus_4778#0 TCATCGAGGGGCTCCGGTTCGGCCATCCTCTCGTCATGCTGCCACTGTTCCTCGACCAGT 600 consensus_4778#1 ------------------------------------------------------------ consensus_4778#0 TCACTAACGCGAGCTACTTGGAAGGGGCGAGAGGGGTTGGGGTGCAGGTGGCCAGGGATG 660 consensus_4778#1 ------------------------------------------------------------ consensus_4778#0 GCGAGCACGGCGGCGCCTTCGACCGGGACGGCGTCGCCGCAGCCGTCCGGGCCGCCGTGG 720 consensus_4778#1 ------------------------------------------------------------ consensus_4778#0 TGGATGAAGAGAGCAAGAAAGCGCTCGCCGCCAACGCCGGGAAGATGGGGGAGTGGTGCC 780 consensus_4778#1 ------------------------------------------------------------ consensus_4778#0 GACACGGAGTGTCACGAGAGGTGCATCGACGCTTTCATTCAGCAGCTCAGGTCCTATACA 840 consensus_4778#1 ------------------------------------------------------------ consensus_4778#0 ACGACAAGGACTGGTTATTAGTACGTACCTCCACTTGGACACATCATCCCTGCCTAAGAT 900 consensus_4778#1 ------------------------------------------------------------ consensus_4778#0 TCGCATGTCCGTTTTATTTGTTGTTCCATCAAAGATTTGATTCGTTTAGTATATTCACCA 960 consensus_4778#1 ------------------------------------------------------------ consensus_4778#0 TGTTTTACTATGTACGGATCAATGTTGCAGTGAATTGAAACACTTCTTTTGCAATAAATT 1020 consensus_4778#1 ------------------------------------------------------------ consensus_4778#0 ACCCATATATTATGGATATTATGGAAAAAAAAAA 1054 consensus_4778#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||