These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 779 fasta sequence [TAAAAAACGGAGGTAGTATTTATTTTTATTCTTAGAGGTAATAGTATGCACACAAACTGAGCAGGTATTCTTTTCAGGCTCTTTTGAAGAGGTTAGGTGTTTTTATGTGATCTCTGCAAATTATTGATTCTATAATGAGGTTGCGTAAATATGAAGTATGATATTATCTAGATTCCAATTACATTGTGGGACATAGTAATTCTCATTGCTATTGTAGGCCATAGTGTATTGATTCCTGTGCATCGCTTCTTTCTGGAGTTCAGTTACCACGTTGGTGCTTCATATGCAACAGCATGGACCAATTTACTATGCCATGTCCTAAGAAGGTTTGTGCATGACAAGAAGGTATCTAAGATAACACTCTTTCGTTAATGCCAACTGTTAAACATAGAAATCAAAGTAATTTATTTTGCTACCATTTCCTTTAGGTGGCACTCACATATTGTTCAATTGTACTGGGGACATTAGGCTTTATTACTGTTATTGGGATCAATCAGATATGCGTTTTCTGCTGGTTTTGCTCATGGCTATGTACACAAGAAATTTTAGATTATAAAATAAATATGATGGACCAATGTTTCCAGCTACTACTTCCGGTGTACATCCTTTTTTATTATGTGTCACTTCAGATTTGGTCTTTGTTCAAACCTGCCTATAATATCAACAAGAACTAAAACTGAAAGATTTCAACAAGAATCATGTACTTGCAAAACCATTGTTCAAAATCCAAGATTTCATCCCTGAAGTGTTCGTTTAAAAGTTAAGGCAATTTTCTGTTC] [+] EMBL AK071449 [TAAAAAACGGAGGTAGTATTTATTTTTATTCTTAGAGGTAATAGTATGCACACAAACTGAGCAGGTATTCTTTTCAGGCTCTTTTGAAGAGGTTAGGTGTTTTTATGTGATCTCTGCAAATTATTGATTCTATAATGAGGTTGCGTAAATATGAAGTATGATATTATCTAGATTCCAATTACATTGTGGGACATAGTAATTCTCATTGCTATTGTAGGCCATAGTGTATTGATTCCTGTGCATCGCTTCTTTCTGGAGTTCAGTTACCACGTTGGTGCTTCATATGCAACAGCATGGACCAATTTACTATGCCATGTCCTAAGAAGGTTTGTGCATGACAAGAAGGTATCTAAGATAACACTCTTTCGTTAATGCCAACTGTTAAACATAGAAATCAAAGTAATTTATTTTGCTACCATTTCCTTTAGGTGGCACTCACATATTGTTCAATTGTACTGGGGACATTAGGCTTTATTACTGTTATTGGGATCAATCAGATATGCGTTTTCTGCTGGTTTTGCTCATGGCTATGTACACAAGAAATTTTAGATTATAAAATAAATATGATGGACCAATGTTTCCAGCTACTACTTCCGGTGTACATCCTTTTTTATTATGTGTCACTTCAGATTTGGTCTTTGTTCAAACCTGCCTATAATATCAACAAGAACTAAAACTGAAAGATTTCAACAAGAATCATGTACTTGCAAAACCATTGTTCAAAATCCAAGATTTCATCCCTGAAGTGTTCGTTTAAAAGTTAAGGCAATTTTCTGTTC] [+] EMBL AA750097 [ ACTACTTCCGGTGTACATCCTTTTTTATTATGAGACACTTCAGATTTGGTCTTTGTTCAAACCTGCCTATAATATCAACAAGAACTAAAACTGAAAGATTTCAACAAGAATCATGTACTTGCAAAACCATTGTTCAAAATCCAAGATTTCATCCCTGAAGTGTTCGTTT AAAGT CGGCA TTTCTGTcg] consensusID : consensus_4800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [TTCCGCCTTTGCTCTTTTAGTCGATATGAAACACATTTCTCAAACCTTCACTTTGTTTCCAAGGGTAATAGTAGCCCACAAACTGAGCAGGTATTCTCTTCAGGCTCTTTGAAGGAGGTTAGGCGTTTTTATGTGCTCTTTGCGAATTATTGGTTCTATAATGAGGTGGCGTAAATCTGAAGTATGATATCATCTAGATTCCAATTACATTGTGGGACATAGTAATTCTCATTGCTATTGTAGGCCATAGTGTATTGATTCCATGCTTATTACCCCTTATGGTTCCCTTCCTTTCCTTATTACCTGTGCATCGCTTCTTTCTGGAGTTCAGTTACCACGTTGGTGCTTCATATGCAACAGCATGGACCAATTTACTATGCCATGTCCTAAGAAGGTTTGTGCATGACAAGAAGGTATCTAAGATAACACTCTTTCGTTAATGCCAACTGTTAAACATAGAAATCAAAGTAATTTATTTTGCTACCCATTTCCTTTAGGTGGCACTCACAGATTGTTCAATTGTACTGGGGACATTAGGCTTTATTACTGTAATTGGAATCAATCAGATATGCGTTCTCTGGTTGTTTTGCTCATGGCTATGTATACAAGAAATTTTAGATTATAAAATAAATATGATGGACCAATGTTTCCAGCTCCTAAAAAAAAAAAAAAAAA] [-] EMBL CA761390 [TTCCGCCTTTGCTCTTTTAGTCGATATGAAACACATTTCTCAAACCTTCACTTTGTTTCCAAGGGTAATAGTAGCCCACAAACTGAGCAGGTATTCTCTTCAGGCTCTTTGAAGGAGGTTAGGCGTTTTTATGTGCTCTTTGCGAATTATTGGTTCTATAATGAGGTGGCGTAAATCTGAAGTATGATATCATCTAGATTCCAATTACATTGTGGGACATAGTAATTCTCATTGCTATTGTAGGCCATAGTGTATTGATTCCATGCTTATTACCCCTTATGGTTCCCTTCCTTTCCTTATTACCTGTGCATCGCTTCTTTCTGGAGTTCAGTTACCACGTTGGTGCTTCATATGCAACAGCATGGACCAATTTACTATGCCATGTCCTAAGAAGGTTTGTGCATGACAAGAAGGTATCTAAGATAACACTCTTTCGTTAATGCCAACTGTTAAACATAGAAATCAAAGTAATTTATTTTGCTACCCATTTCCTTTAGGTGGCACTCACAGATTGTTCAATTGTACTGGGGACATTAGGCTTTATTACTGTAATTGGAATCAATCAGATATGCGTTCTCTGGTTGTTTTGCTCATGGCTATGTATACAAGAAATTTTAGATTATAAAATAAATATGATGGACCAATGTTTCCAGCTCCTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4800#0 ------------------------TAAAAAACGGAGGTAGTA---TTTATTTTTATTCTT 33 consensus_4800#1 TTCCGCCTTTGCTCTTTTAGTCGATATGAAACACATTTCTCAAACCTTCACTTTGTTTCC 60 ** **** * * * ** *** ** consensus_4800#0 AGAGGTAATAGTATGCACACAAACTGAGCAGGTATTCTTTTCAGGCTCTTTTGAAGAGGT 93 consensus_4800#1 AAGGGTAATAGTA-GCCCACAAACTGAGCAGGTATTCTCTTCAGGCTCTTTGAAGGAGGT 119 * ********** ** ********************* ************ * ***** consensus_4800#0 TAGGTGTTTTTATGTGATCTCTGCAAATTATTGATTCTATAATGAGGTTGCGTAAATATG 153 consensus_4800#1 TAGGCGTTTTTATGTGCTCTTTGCGAATTATTGGTTCTATAATGAGGTGGCGTAAATCTG 179 **** *********** *** *** ******** ************** ******** ** consensus_4800#0 AAGTATGATATTATCTAGATTCCAATTACATTGTGGGACATAGTAATTCTCATTGCTATT 213 consensus_4800#1 AAGTATGATATCATCTAGATTCCAATTACATTGTGGGACATAGTAATTCTCATTGCTATT 239 *********** ************************************************ consensus_4800#0 GTAGGCCATAGTGTATTGATTCC------------------------------------- 236 consensus_4800#1 GTAGGCCATAGTGTATTGATTCCATGCTTATTACCCCTTATGGTTCCCTTCCTTTCCTTA 299 *********************** consensus_4800#0 -----TGTGCATCGCTTCTTTCTGGAGTTCAGTTACCACGTTGGTGCTTCATATGCAACA 291 consensus_4800#1 TTACCTGTGCATCGCTTCTTTCTGGAGTTCAGTTACCACGTTGGTGCTTCATATGCAACA 359 ******************************************************* consensus_4800#0 GCATGGACCAATTTACTATGCCATGTCCTAAGAAGGTTTGTGCATGACAAGAAGGTATCT 351 consensus_4800#1 GCATGGACCAATTTACTATGCCATGTCCTAAGAAGGTTTGTGCATGACAAGAAGGTATCT 419 ************************************************************ consensus_4800#0 AAGATAACACTCTTTCGTTAATGCCAACTGTTAAACATAGAAATCAAAGTAATTTATTTT 411 consensus_4800#1 AAGATAACACTCTTTCGTTAATGCCAACTGTTAAACATAGAAATCAAAGTAATTTATTTT 479 ************************************************************ consensus_4800#0 GCTACC-ATTTCCTTTAGGTGGCACTCACATATTGTTCAATTGTACTGGGGACATTAGGC 470 consensus_4800#1 GCTACCCATTTCCTTTAGGTGGCACTCACAGATTGTTCAATTGTACTGGGGACATTAGGC 539 ****** *********************** ***************************** consensus_4800#0 TTTATTACTGTTATTGGGATCAATCAGATATGCGTTTTCTGCTGGTTTTGCTCATGGCTA 530 consensus_4800#1 TTTATTACTGTAATTGGAATCAATCAGATATGCGTTCTCTGGTTGTTTTGCTCATGGCTA 599 *********** ***** ****************** **** * **************** consensus_4800#0 TGTACACAAGAAATTTTAGATTATAAAATAAATATGATGGACCAATGTTTCCAGCTACTA 590 consensus_4800#1 TGTATACAAGAAATTTTAGATTATAAAATAAATATGATGGACCAATGTTTCCAGCTCCTA 659 **** *************************************************** *** consensus_4800#0 CTTCCGGTGTACATCCTTTTTTATTATGTGTCACTTCAGATTTGGTCTTTGTTCAAACCT 650 consensus_4800#1 AAAAAAAAAAAAAAAA-------------------------------------------- 675 * * consensus_4800#0 GCCTATAATATCAACAAGAACTAAAACTGAAAGATTTCAACAAGAATCATGTACTTGCAA 710 consensus_4800#1 ------------------------------------------------------------ consensus_4800#0 AACCATTGTTCAAAATCCAAGATTTCATCCCTGAAGTGTTCGTTTAAAAGTTAAGGCAAT 770 consensus_4800#1 ------------------------------------------------------------ consensus_4800#0 TTTCTGTTC 779 consensus_4800#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||