|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1893 fasta sequence
[CGCAGACACACACCCCCCATACTGCCACAAGGGCCGCCGCCGCCGCCGGGAGCGATGGCCGCCGCCACCTCCATCAACGCCGTCCCCTGCTCCGCTGGTCGGCCGAAGCGGAGGAGCCAGCGCCGCGGCGCCTCTACGGTCGCCGTGCGCGCGTCCGGCGACGCTAGCACCGTGACGCTGCTGGACTACGGCGCGGGCAACGTGCGCAGCGTGCGCAATGCCATCCGCCACCTCGGCTTCGGCATCCGCGACGTGCGCAGCCCGGAGGACATCCTCGCCGCCGACCGCCTCGTCTTCCCGGGGGTCGGCGCCTTCGGCTCAGCCATGGACGTCCTCACCCGCTCCGGGATGGCCGACGCGCTCCGCGAGTACATCCGCAGGGACCGCCCCTTCCTCGGCATCTGCCTCGGCCTCCAGCTTCTCTTCGACTCTAGCGAGGAGAATGGCCCGATAAGCGGCCTTGGTGTGATACCTGGAGTTGTCAGGCGATTTGACTCTTCGAAGGGTCTCATTGTGCCTCACATTGGCTGGAATGCTTTGGAGATCACCAAAGACACGCAGCTGCTCAAGGGAGCTGAAGGCCACCATGTGTACTTTGTTCACTCCTATCATGCTCTGCCTTCAGATGAAAACAAAGAGTGGATTTCTTCTGTGTGCAACTATGGCGAGAGTTTCATATCATCCATCTCAATGGGCAACATTCAGGCAGTTCAGTTTCACCCAGAAAAGAGCGGAGCTACTGGGCTTTCAATTTTGAAAAATTTTCTCAGTCCAAACACTTCAGGATCAAAGGTCCCATCTCGTAGGAAAGCATCGAACCTTGCAAAGAGAGTCATTGCATGTCTTGATGTTCGGTCAAATGATAGTGGGGATCTTGTGGTAACAAAAGGTGACCAGTATGATGTAAGAGACCATAGTAGTAGCAAAGAGGTAAGAAACCTCGGGAAGCCAGTGGATTTAGCAAGCCAGTACTACATAGATGGTGCTGATGAGGTTAGCTTCTTGAATATAACTGGTTTCCGTGACTTTCCGTTGGGAGATTTGCCAATGCTAGAGGTATTACGTTGTGCATCTGAGAAAGTATTTGTGCCACTTACAGTTGGTGGAGGTATAAGAGACTTCACAGATGCAAATGGGAGATACTACTCAAGTTTGGAAGTAGCGTCAGAGTACTTCAGGTCTGGTGCTGACAAGATTTCAATTGGTAGTGATGCCGTTTTTGCTGCTGAAGCCTATTTGCAGACTGGTGTAAAGACAGGAAAAAGCAGCTTGGAGCAAATCTCTAGAGTATATGGCAACCAGGCAGTTGTTGTAAGTATTGACCCTCGAAGAGTATATGTCAAGAATCCGGAAGAGGTGCAATTCAAAACTGTAAAGGTGTCCAATAAAGGTCCATTAGGAGAAGAATATGCATGGTACCAGTGCACAGTAAGTGGTGGGCGTGACAGCCGTCCTATAGGAGCATATGAACTAGCCAAAGCAGTTGAAGAATTGGGTGCTGGAGAAATACTTCTTAATTGCATTGATTGTGATGGCCAGGGCTGCGGATTTGACATAGATCTGGTAAAAATGGTGTCAGATGCTGTGACTATCCCTGTCATTGCAAGCAGTGGTGCTGGTACTGTCGAACATTTTTCTGAGGTCTTTGAGAAAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCAGAGTGTAGGATGGAAATCCTTTGATCTATTGGGAAAATAAATCAGGGCTTTGTAACAGTTGTGTGTTCTATTTTGGGAATAAGATGGTAATTCATAGGCCATGGATTGGAAATGCAATTTCGTAATAAATTGTTTGAAAT]
[+] EMBL AK073854 [CGCAGACACACACCCCCCATACTGCCACAAGGGCCGCCGCCGCCGCCGGGAGCGATGGCCGCCGCCACCTCCATCAACGCCGTCCCCTGCTCCGCTGGTCGGCCGAAGCGGAGGAGCCAGCGCCGCGGCGCCTCTACGGTCGCCGTGCGCGCGTCCGGCGACGCTAGCACCGTGACGCTGCTGGACTACGGCGCGGGCAACGTGCGCAGCGTGCGCAATGCCATCCGCCACCTCGGCTTCGGCATCCGCGACGTGCGCAGCCCGGAGGACATCCTCGCCGCCGACCGCCTCGTCTTCCCGGGGGTCGGCGCCTTCGGCTCAGCCATGGACGTCCTCACCCGCTCCGGGATGGCCGACGCGCTCCGCGAGTACATCCGCAGGGACCGCCCCTTCCTCGGCATCTGCCTCGGCCTCCAGCTTCTCTTCGACTCTAGCGAGGAGAATGGCCCGATAAGCGGCCTTGGTGTGATACCTGGAGTTGTCAGGCGATTTGACTCTTCGAAGGGTCTCATTGTGCCTCACATTGGCTGGAATGCTTTGGAGATCACCAAAGACACGCAGCTGCTCAAGGGAGCTGAAGGCCACCATGTGTACTTTGTTCACTCCTATCATGCTCTGCCTTCAGATGAAAACAAAGAGTGGATTTCTTCTGTGTGCAACTATGGCGAGAGTTTCATATCATCCATCTCAATGGGCAACATTCAGGCAGTTCAGTTTCACCCAGAAAAGAGCGGAGCTACTGGGCTTTCAATTTTGAAAAATTTTCTCAGTCCAAACACTTCAGGATCAAAGGTCCCATCTCGTAGGAAAGCATCGAACCTTGCAAAGAGAGTCATTGCATGTCTTGATGTTCGGTCAAATGATAGTGGGGATCTTGTGGTAACAAAAGGTGACCAGTATGATGTAAGAGACCATAGTAGTAGCAAAGAGGTAAGAAACCTCGGGAAGCCAGTGGATTTAGCAAGCCAGTACTACATAGATGGTGCTGATGAGGTTAGCTTCTTGAATATAACTGGTTTCCGTGACTTTCCGTTGGGAGATTTGCCAATGCTAGAGGTATTACGTTGTGCATCTGAGAAAGTATTTGTGCCACTTACAGTTGGTGGAGGTATAAGAGACTTCACAGATGCAAATGGGAGATACTACTCAAGTTTGGAAGTAGCGTCAGAGTACTTCAGGTCTGGTGCTGACAAGATTTCAATTGGTAGTGATGCCGTTTTTGCTGCTGAAGCCTATTTGCAGACTGGTGTAAAGACAGGAAAAAGCAGCTTGGAGCAAATCTCTAGAGTATATGGCAACCAGGCAGTTGTTGTAAGTATTGACCCTCGAAGAGTATATGTCAAGAATCCGGAAGAGGTGCAATTCAAAACTGTAAAGGTGTCCAATAAAGGTCCATTAGGAGAAGAATATGCATGGTACCAGTGCACAGTAAGTGGTGGGCGTGACAGCCGTCCTATAGGAGCATATGAACTAGCCAAAGCAGTTGAAGAATTGGGTGCTGGAGAAATACTTCTTAATTGCATTGATTGTGATGGCCAGGGCTGCGGATTTGACATAGATCTGGTAAAAATGGTGTCAGATGCTGTGACTATCCCTGTCATTGCAAGCAGTGGTGCTGGTACTGTCGAACATTTTTCTGAGGTCTTTGAGAAAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCAGAGTGTAGGATGGAAATCCTTTGATCTATTGGGAAAATAAATCAGGGCTTTGTAACAGTTGTGTGTTCTATTTTGGGAATAAGATGGTAATTCATAGGCCATGGATTGGAAATGCAATTTCGTAATAAATTGTTTGAAAT]
consensusID : consensus_4801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[TCTCATGTACTTTTTTCAGGTCCATTAGGAGAAGAATATGCATGGTACCAGTGCACAGTAAGTGGTGGGCGTGACAGCCCGTCCTATAGGAGCATATGAACTAGCCAAAGCAGTTGAAGAATTGGGTGCTGGAGAAATACTTCTTAATTGCATTGATTGTGATGGCCAGGGCTGCGGATTTGACATAGATCTGGTAAAAATGGTGTCAGATGCTGTGACTATCCCTGTCATTGCAAGCAGTGGTGCTGGTACTGTCGAACATTTTTCTGAGGTCTTTGAGAAAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCAGAGTGTAGGATGGAAATCCTTTGATCTATTGGGAAAATAAATCAGGGCTTTGTAACAGTTGTGTGTTCTATTTTGGGAATAAGATGGTAATTCATAGGCCATGGATTGGAAATGCAATTTCGTAATAAATTGTTTGAAATCTTCTGTTAAAAAA]
[-] EMBL CF330345 [TCTCATGTACTTTTTTCAGGTCCATTAGGAGAAGAATATGCATGGTACCAGTGCACAGTAAGTGGTGGGCGTGACAGCCCGTCCTATAGGAGCATATGAACTAGCCAAAGCAGTTGAAGAATTGGGTGCTGGAGAAATACTTCTTAATTGCATTGATTGTGATGGCCAGGGCTGCGGATTTGACATAGATCTGGTAAAAATGGTGTCAGATGCTGTGACTATCCCTGTCATTGCAAGCAGTGGTGCTGGTACTGTCGAACATTTTTCTGAGGTCTTTGAGAAAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCAGAGTGTAGGATGGAAATCCTTTGATCTATTGGGAAAATAAATCAGGGCTTTGTAACAGTTGTGTGTTCTATTTTGGGAATAAGATGGTAATTCATAGGCCATGGATTGGAAATGCAATTTCGTAATAAATTGTTTGAAATCTTCTGTTAAAAAA]
consensusID : consensus_4801#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence
[TGGACTGAAGGAGTAGAAAGGGCAACATTCAGGCAGTTCAGTTTCACCCAGAAAAGAGCGGAGCTACTGGGCTTTCAATTTTGAAAAATTTTCTCAGTCCAAACTCTTCAGGATCAAAGGTCCCATCTCGTAGGAAAGCATCGAACCTTGCAAAGAGAGTCATTGCATGTCTTGATGTTCGGTCAAATGATAGTGGGGATCTTGTGGTAACAAAAGGTGACCAGTATGATGTAAGAGACCATAGTAGTAGCAAAGAGGTAAGAAACCTCGGGAAGCCAGTGGATTTAGCAAGCCAGTACTACATAGATGGTGCTGATGAGGTTAGCTTCTTGAATATAACTGGTTTCCGTGACTTTCCGTTGGGAGATTTGCCAATGCTAGAGGTATTACCGTTGTGCATCTGAGAAAGTATTTGTGCCACTTACAGTTGGTGGAGGTATAAGAGACTTCACAGATGCAAATGGGAGATA]
[+] EMBL CF330344 [TGGACTGAAGGAGTAGAAAGGGCAACATTCAGGCAGTTCAGTTTCACCCAGAAAAGAGCGGAGCTACTGGGCTTTCAATTTTGAAAAATTTTCTCAGTCCAAACTCTTCAGGATCAAAGGTCCCATCTCGTAGGAAAGCATCGAACCTTGCAAAGAGAGTCATTGCATGTCTTGATGTTCGGTCAAATGATAGTGGGGATCTTGTGGTAACAAAAGGTGACCAGTATGATGTAAGAGACCATAGTAGTAGCAAAGAGGTAAGAAACCTCGGGAAGCCAGTGGATTTAGCAAGCCAGTACTACATAGATGGTGCTGATGAGGTTAGCTTCTTGAATATAACTGGTTTCCGTGACTTTCCGTTGGGAGATTTGCCAATGCTAGAGGTATTACCGTTGTGCATCTGAGAAAGTATTTGTGCCACTTACAGTTGGTGGAGGTATAAGAGACTTCACAGATGCAAATGGGAGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4801#0 CGCAGACACACACCCCCCATACTGCCACAAGGGCCGCCGCCGCCGCCGGGAGCGATGGCC 60
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 GCCGCCACCTCCATCAACGCCGTCCCCTGCTCCGCTGGTCGGCCGAAGCGGAGGAGCCAG 120
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 CGCCGCGGCGCCTCTACGGTCGCCGTGCGCGCGTCCGGCGACGCTAGCACCGTGACGCTG 180
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 CTGGACTACGGCGCGGGCAACGTGCGCAGCGTGCGCAATGCCATCCGCCACCTCGGCTTC 240
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 GGCATCCGCGACGTGCGCAGCCCGGAGGACATCCTCGCCGCCGACCGCCTCGTCTTCCCG 300
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 GGGGTCGGCGCCTTCGGCTCAGCCATGGACGTCCTCACCCGCTCCGGGATGGCCGACGCG 360
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 CTCCGCGAGTACATCCGCAGGGACCGCCCCTTCCTCGGCATCTGCCTCGGCCTCCAGCTT 420
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 CTCTTCGACTCTAGCGAGGAGAATGGCCCGATAAGCGGCCTTGGTGTGATACCTGGAGTT 480
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 GTCAGGCGATTTGACTCTTCGAAGGGTCTCATTGTGCCTCACATTGGCTGGAATGCTTTG 540
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 GAGATCACCAAAGACACGCAGCTGCTCAAGGGAGCTGAAGGCCACCATGTGTACTTTGTT 600
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 CACTCCTATCATGCTCTGCCTTCAGATGAAAACAAAGAGTGGATTTCTTCTGTGTGCAAC 660
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ----------------------TCTCATGTACTTTTTTCAGGTCCATTAGGAGAAGAATA 38
consensus_4801#0 TATGGCGAGAGTTTCATATC-ATCCATCTCAATGGGCAACAT-TCAGGCAGTTCAGTTTC 718
consensus_4801#2 -------------TGGACTG-AAGGAGTAGAAAGGGCAACAT-TCAGGCAGTTCAGTTTC 45
consensus_4801#1 TGCATGGTACCAGTGCACAGTAAGTGGTGGGCGTGACAGCCCGTCCTATAGGAGCATATG 98
* * * ** * ** ** * *
consensus_4801#0 ACCCAG--AAAAGAGCGGAGCTACTGGGCTTTCAATTTTGAAAAATTTTCTCAGTCCAA- 775
consensus_4801#2 ACCCAG--AAAAGAGCGGAGCTACTGGGCTTTCAATTTTGAAAAATTTTCTCAGTCCAA- 102
consensus_4801#1 AACTAGCCAAAGCAGTTGAAGAATTGGGTGCTGGA----GAAATACTTCTTAATTGCATT 154
* * ** *** ** ** * **** * * **** * ** * * * **
consensus_4801#0 ACACTTCAGGATCAAAGGTCCCATCTCGTAGGAAAGCATCGAACCTTGCAAAGAGAGTCA 835
consensus_4801#2 ACTCTTCAGGATCAAAGGTCCCATCTCGTAGGAAAGCATCGAACCTTGCAAAGAGAGTCA 162
consensus_4801#1 GATTGTGATGGCCAGGGCTGCGGATTTGACATAGATCTGGTAAAAATGGTGTCAGATGCT 214
* * * ** * * * * * * * * ** ** *** *
consensus_4801#0 TTGCATGTCTTGATGTTCGGTCAAATGATAGTGGGGATCTTGTGGTAACAAAAGGTGACC 895
consensus_4801#2 TTGCATGTCTTGATGTTCGGTCAAATGATAGTGGGGATCTTGTGGTAACAAAAGGTGACC 222
consensus_4801#1 GTGACTATCCCTGTCATTG--CAAGCAGTGGTGCTGGTACTGTCGAACATTTTTCTGAGG 272
** * ** * * * *** * *** * * *** * * ***
consensus_4801#0 AGTATGATGTAAGAGACCATAGTAGTAGCAAAGAGGTAAGAAACCTCG---GGAAGCCAG 952
consensus_4801#2 AGTATGATGTAAGAGACCATAGTAGTAGCAAAGAGGTAAGAAACCTCG---GGAAGCCAG 279
consensus_4801#1 TCTTTGAGAAAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGG 332
* *** ** * * * * * * * * * * ** **** *
consensus_4801#0 T---GGATTTAGCA---AGCCAGTACTACATAGATGGTGCTGATGAGGTTAGCTTCTTGA 1006
consensus_4801#2 T---GGATTTAGCA---AGCCAGTACTACATAGATGGTGCTGATGAGGTTAGCTTCTTGA 333
consensus_4801#1 TTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCAGAGTGTAGG 392
* * ** **** * ** * ****** ** * ***** ** * * *
consensus_4801#0 ATATAACTGGTTTCCGTGACTTTCCGTTGGGAGATTTGCCAATGCTA-GAGGTATTAC-G 1064
consensus_4801#2 ATATAACTGGTTTCCGTGACTTTCCGTTGGGAGATTTGCCAATGCTA-GAGGTATTACCG 392
consensus_4801#1 ATGGAAAT----CCTTTGATCTATTG--GGAAAATAAATCAGGGCTTTGTAACAGTTGTG 446
** ** * * *** * * ** * ** ** *** * * * *
consensus_4801#0 TTGTGCATCTGAGAAAGTATTTGTGCCACTTACAGTTGGTGGAG-GTATAAGAGACTTCA 1123
consensus_4801#2 TTGTGCATCTGAGAAAGTATTTGTGCCACTTACAGTTGGTGGAG-GTATAAGAGACTTCA 451
consensus_4801#1 TGTTCTATTTTGGGAATAAGATG-GTAATTCATAGGCCATGGATTGGAAATGCAATTTCG 505
* * ** * * ** * ** * * * * ** **** * * * * * ***
consensus_4801#0 CAGATGCAAATGGGAGATACTACTCAAGTTTGGAAGTAGCGTCAGAGTACTTCAGGTCTG 1183
consensus_4801#2 CAGATGCAAATGGGAGATA----------------------------------------- 470
consensus_4801#1 TAATAAATTGTTTGAAATCTTCTGTTAAAAAA---------------------------- 537
* * ** **
consensus_4801#0 GTGCTGACAAGATTTCAATTGGTAGTGATGCCGTTTTTGCTGCTGAAGCCTATTTGCAGA 1243
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 CTGGTGTAAAGACAGGAAAAAGCAGCTTGGAGCAAATCTCTAGAGTATATGGCAACCAGG 1303
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 CAGTTGTTGTAAGTATTGACCCTCGAAGAGTATATGTCAAGAATCCGGAAGAGGTGCAAT 1363
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 TCAAAACTGTAAAGGTGTCCAATAAAGGTCCATTAGGAGAAGAATATGCATGGTACCAGT 1423
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 GCACAGTAAGTGGTGGGCGTGACAGCCGTCCTATAGGAGCATATGAACTAGCCAAAGCAG 1483
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 TTGAAGAATTGGGTGCTGGAGAAATACTTCTTAATTGCATTGATTGTGATGGCCAGGGCT 1543
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 GCGGATTTGACATAGATCTGGTAAAAATGGTGTCAGATGCTGTGACTATCCCTGTCATTG 1603
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 CAAGCAGTGGTGCTGGTACTGTCGAACATTTTTCTGAGGTCTTTGAGAAAACAAATGCTT 1663
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 CTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGGTTCCGATTTCAGCAGTGAAAG 1723
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 AGCATCTGGTAGATGCTGGCGTGGAGGTCAGAGTGTAGGATGGAAATCCTTTGATCTATT 1783
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 GGGAAAATAAATCAGGGCTTTGTAACAGTTGTGTGTTCTATTTTGGGAATAAGATGGTAA 1843
consensus_4801#2 ------------------------------------------------------------
consensus_4801#1 ------------------------------------------------------------
consensus_4801#0 TTCATAGGCCATGGATTGGAAATGCAATTTCGTAATAAATTGTTTGAAAT 1893
consensus_4801#2 --------------------------------------------------
consensus_4801#1 --------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||