These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4814#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2248 fasta sequence [ATTCCCCCCATTCCCTTCTCCCCCTTCTGCACGACTCCACCCACCTCCAATGCCCTCCAAACCCTAGCCCATAACCCCTCCCGCCTCGCTGCCATGCCAGATCTGAGCACCGTCTGCCTCCCCCTCTCGCCGCAACCCCCCTCCACCGCCGCCGCCGCCGGCGGGGAGCTAGCAGGCGAGCAGCCCGCCGCCGCCGCCGTCACCACCGCCGCGGCGGCGGTGTCTGCGTCGGCAGAGGCGGAGGCGGCGGGGGAAGCAGAATCCGCCTCCGGTGGCGACGGCGCGCCCGTTCTCCCGGTGGAATGCCGATGGAGCGGCCGAGTTCGCAGCTTCGCGGGCGCTGGCGAGGGCGCGGGCGCGGCCGCTGTCCCCGCGTGCCCCGCCCCGCGCCGCGGGGGCGGGAAAAAGCCGTCCTCCGCGCCGTCGCCTTCGTCCACGGTGGCGACCGCGCCGGCTCATCCATCGGGTCGGCCGTTCGAGGAGTACGTTAAGGAGTGGAAGGCGAAGAAGGCGGCGCTCGGCGTGCCGGCCGGACGCTGCGAGCTGCCTTTCCTAACCGGCACGCCTAAGGCGGTTGAATGTCGATTATGTTCTAAGATTATTCATCCTGGAGAAGAAATAAAGTGTTCGGTTAGTAGATGTGGAGAATTGTTCCACCTGACTTGTGCAGCAGAAGATACCACAAATTTCATTGCTGAAAGCTTCAAATGCCCTCAACATGGCTGTATGGTCTGTAAGCAAAAGATGTTTTTTTGGCGTTGTGGACGGTGTACGGTTGCAGCACATACAAAATGTGCACCATGGCCAGTAATTCATTTAAAAGATGACCAAGGAAGTGCTATCTGTTGGAGGCATCCCTCTGATTGGCTCCTTCAAAATGAGGACTACTTTGTTTAATGGTGGCAGAATGCTGACTTGACGAACAGCATAGAGTATTTTGCCGACTACCTGTTCCATATGTTAATGAAGACTTCAAGATTGATTCAACCATCAGGGATTTCACTGCAGCTGTCTGCAAACCACCACACTTTACGTTTATCAGACGCAATGTATATTTAATCAAGAAAAAACGTCCTGATTCTCGCGCGGAAGCTGGGTGCACAAACTGCAGTGCTGATTCTACGTGCAAAGATGACTGCGAATGCAGGGGCCTTTACATGAGTTGTTCCAAGAATTGCCACTGCTCAGATATGTGTACGAACAAGCCATTCCGCAAGGATAAAAAAATAAAAGCTGTCAAGACAAAACGTTGTGGATGGGGTGCTATTTCATTGGAGCCATTGGAAAAAGGTGATTTTATAATTGAGTATGTTGGTGAAGTCATCAATGATGCAACATGTGAACAAAGGCTTTGGGACATGAAACGGCGAGGTGATAAAAATTTCTACATGTGTGAAATCAGCAAAGATTTTACAATAGATGCAACATTTAAAGGAAACACATCACGTTTTCTGAACCACGGTTGTGATCCCAACTGTAAATTAGAAAAATGGCAAGTTGATGGTGAGACAAGAGTTGGTGTTTTCGCCTCTCGTTCCATCCAAGTTGGAGAACACTTAACTTATGACTACAGGTTTGTGCATTTCGGGGAGAAGGTTAAATGCTATTGCGGGGCACAAAATTGTCAAGGTTACCTGGGCAACCAAATAAAGAATCCTACGCAGCGTGCTCTCGCAATTGCAGCATTGGAGAACGAGTGGCTTGAATCTTTGAAGATACAACAGGACACCTCTGCTTCAAGACACAAACCGATGACACATTTGTTACCTTGGACCAACTGTATAGAGGTACCATTTAACTTGAGAAGCAAACGGAAAATACACCGGATATGCTGGGGATGCAAAAGGAGGAGATCAGCCGTTGCCGTTACATCTCCAACAAGCATACAAGCGTCAGTTACTGAAGCTGCTGCTGCTGCTGCTGCTGCATCCCTGCCCGCTTTGCCATGAAGTGGCAATAGCTGAAGTCGCTTCTCATCTGTATAATATAG-GATGACACATTTCTCACATGAAATTGATTTTTGAACGACGATTCTTTTGCATTGCTCCTCCCCACCACCACCAAAACTCCCTGTTGTAATTTGTTACAATATTCATTTGATTACATAGTTTGTTTAATTTACAGTTGTTCGCTGAGAATACTCGACTATCTCATGTAATCAATGTTGTGCTCCAACTCTCGATTGCCTCAGCCCTCAAGTTGAGGCGAGTACATGAGGGCTATTATTGTCTTAGAGAATCTTATACTA] [+] EMBL AK067083 [ATTCCCCCCATTCCCTTCTCCCCCTTCTGCACGACTCCACCCACCTCCAATGCCCTCCAAACCCTAGCCCATAACCCCTCCCGCCTCGCTGCCATGCCAGATCTGAGCACCGTCTGCCTCCCCCTCTCGCCGCAACCCCCCTCCACCGCCGCCGCCGCCGGCGGGGAGCTAGCAGGCGAGCAGCCCGCCGCCGCCGCCGTCACCACCGCCGCGGCGGCGGTGTCTGCGTCGGCAGAGGCGGAGGCGGCGGGGGAAGCAGAATCCGCCTCCGGTGGCGACGGCGCGCCCGTTCTCCCGGTGGAATGCCGATGGAGCGGCCGAGTTCGCAGCTTCGCGGGCGCTGGCGAGGGCGCGGGCGCGGCCGCTGTCCCCGCGTGCCCCGCCCCGCGCCGCGGGGGCGGGAAAAAGCCGTCCTCCGCGCCGTCGCCTTCGTCCACGGTGGCGACCGCGCCGGCTCATCCATCGGGTCGGCCGTTCGAGGAGTACGTTAAGGAGTGGAAGGCGAAGAAGGCGGCGCTCGGCGTGCCGGCCGGACGCTGCGAGCTGCCTTTCCTAACCGGCACGCCTAAGGCGGTTGAATGTCGATTATGTTCTAAGATTATTCATCCTGGAGAAGAAATAAAGTGTTCGGTTAGTAGATGTGGAGAATTGTTCCACCTGACTTGTGCAGCAGAAGATACCACAAATTTCATTGCTGAAAGCTTCAAATGCCCTCAACATGGCTGTATGGTCTGTAAGCAAAAGATGTTTTTTTGGCGTTGTGGACGGTGTACGGTTGCAGCACATACAAAATGTGCACCATGGCCAGTAATTCATTTAAAAGATGACCAAGGAAGTGCTATCTGTTGGAGGCATCCCTCTGATTGGCTCCTTCAAAATGAGGACTACTTTGTTTAATGGTGGCAGAATGCTGACTTGACGAACAGCATAGAGTATTTTGCCGACTACCTGTTCCATATGTTAATGAAGACTTCAAGATTGATTCAACCATCAGGGATTTCACTGCAGCTGTCTGCAAACCACCACACTTTACGTTTATCAGACGCAATGTATATTTAATCAAGAAAAAACGTCCTGATTCTCGCGCGGAAGCTGGGTGCACAAACTGCAGTGCTGATTCTACGTGCAAAGATGACTGCGAATGCAGGGGCCTTTACATGAGTTGTTCCAAGAATTGCCACTGCTCAGATATGTGTACGAACAAGCCATTCCGCAAGGATAAAAAAATAAAAGCTGTCAAGACAAAACGTTGTGGATGGGGTGCTATTTCATTGGAGCCATTGGAAAAAGGTGATTTTATAATTGAGTATGTTGGTGAAGTCATCAATGATGCAACATGTGAACAAAGGCTTTGGGACATGAAACGGCGAGGTGATAAAAATTTCTACATGTGTGAAATCAGCAAAGATTTTACAATAGATGCAACATTTAAAGGAAACACATCACGTTTTCTGAACCACGGTTGTGATCCCAACTGTAAATTAGAAAAATGGCAAGTTGATGGTGAGACAAGAGTTGGTGTTTTCGCCTCTCGTTCCATCCAAGTTGGAGAACACTTAACTTATGACTACAGGTTTGTGCATTTCGGGGAGAAGGTTAAATGCTATTGCGGGGCACAAAATTGTCAAGGTTACCTGGGCAACCAAATAAAGAATCCTACGCAGCGTGCTCTCGCAATTGCAGCATTGGAGAACGAGTGGCTTGAATCTTTGAAGATACAACAGGACACCTCTGCTTCAAGACACAAACCGATGACACATTTGTTACCTTGGACCAACTGTATAGAGGTACCATTTAACTTGAGAAGCAAACGGAAAATACACCGGATATGCTGGGGATGCAAAAGGAGGAGATCAGCCGTTGCCGTTACATCTCCAACAAGCATACAAGCGTCAGTTACTGAAGCTGCTGCTGCTGCTGCTGCTGCATCCCTGCCCGCTTTGCCATGAAGTGGCAATAGCTGAAGTCGCTTCTCATCTGTATAATATAG GATGACACATTTCTCACATGAAATTGATTTTTGAACGACGATTCTTTTGCATTGCTCCTCCCCACCACCACCAAAACTCCCTGTTGTAATTTGTTACAATATTCATTTGATTACATAGTTTGTTTAATTTACAGTTGTTCGCTGAGAATACTCGACTATCTCATGTAATCAATGTTGTGCTCCAACTCTCGATTGCCTCAGCCCTCAAGTTGAGGCGAGTACATGAGGGCTATTATTGTCTTAGAGAATCTTATACTA] [-] EMBL CB637686 [ AAGGAGGAGATCAGCCGTTGCCGTTACATCTCCAACAAGCAGACAAGCGTCAGTTACTGAAGCTGCTGCTGCTGCTGCTGCTGCATCCCTGCCCGCTTTGCCATGAAGTGGCAATAGCTGAAGTCGATTCTCATCTGTATAAAAAAGAAAAGACACATTTCTCACATGAAATTGATTTTTGAACGACGATTCTTTTGCATTGCTCCTCCCCACCACCACCAAAACTCCCTGTTGTAATTTGTTACAATATTCATTTGATTACATAGTTTGTTTAATTTACAGTTGTT ] consensusID : consensus_4814#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CACAAAAAGTGTCACGGGGTATGTGCGCGAGAGACAATGTAAGATTCCGGGCCCCACCGTGGCTCTCCCCCCTTTCGAGCCTTGGGACGCACCGAGTGCGCTTGGAACCTGCGAACGGTCCACACGGGCCGCCTCTGCTTCCAACGCCACAAACGCGATGGCCCCATTTGTTCCCCTGGGCCCCACTGTATAGAGGTACCCTTTACCCTGAGAAGCAAACGGAAAATAACCCGGATATGCTGGGGATGCAAAAGGAGGAGATCACCCGTTGCCGTTCCATCTCCAGCAAGCATGCAAGCGTCAGTTATTGAAGCTGCTGCTCTCGCTGCTGCATCCCTGCCCGCTTTGCCATGAAGTGGCAATAGCTGAAGTCGCTTCTCATCTGTATAATATAGGATGACCCATTTCTCACATGAAATTGATTTTTGAACGACGATTCTTTTGCATTGCTCCTCCCCACCACCACCAAAACTCCCTGTTGTAATTTGTTACAATATTCATTTGATTACATAGTTTGTTTAATTTACAGTTGTTCGCTGAGAATACTCGACTATCTCATGTAATCAATGTTGTGCTCCAACTCTCGATTGCCTCAGCCCTCAAGTTGAGGCGAGTACATGAGGGCTATTATTGTCTTAGAGAATCTTATACTATTATTTTTCCAAAAAAAAAAAAA] [-] EMBL CA761297 [CACAAAAAGTGTCACGGGGTATGTGCGCGAGAGACAATGTAAGATTCCGGGCCCCACCGTGGCTCTCCCCCCTTTCGAGCCTTGGGACGCACCGAGTGCGCTTGGAACCTGCGAACGGTCCACACGGGCCGCCTCTGCTTCCAACGCCACAAACGCGATGGCCCCATTTGTTCCCCTGGGCCCCACTGTATAGAGGTACCCTTTACCCTGAGAAGCAAACGGAAAATAACCCGGATATGCTGGGGATGCAAAAGGAGGAGATCACCCGTTGCCGTTCCATCTCCAGCAAGCATGCAAGCGTCAGTTATTGAAGCTGCTGCTCTCGCTGCTGCATCCCTGCCCGCTTTGCCATGAAGTGGCAATAGCTGAAGTCGCTTCTCATCTGTATAATATAGGATGACCCATTTCTCACATGAAATTGATTTTTGAACGACGATTCTTTTGCATTGCTCCTCCCCACCACCACCAAAACTCCCTGTTGTAATTTGTTACAATATTCATTTGATTACATAGTTTGTTTAATTTACAGTTGTTCGCTGAGAATACTCGACTATCTCATGTAATCAATGTTGTGCTCCAACTCTCGATTGCCTCAGCCCTCAAGTTGAGGCGAGTACATGAGGGCTATTATTGTCTTAGAGAATCTTATACTATTATTTTTCCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4814#0 ATTCCCCCCATTCCCTTCTCCCCCTTCTGCACGACTCCACCCACCTCCAATGCCCTCCAA 60 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 ACCCTAGCCCATAACCCCTCCCGCCTCGCTGCCATGCCAGATCTGAGCACCGTCTGCCTC 120 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 CCCCTCTCGCCGCAACCCCCCTCCACCGCCGCCGCCGCCGGCGGGGAGCTAGCAGGCGAG 180 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 CAGCCCGCCGCCGCCGCCGTCACCACCGCCGCGGCGGCGGTGTCTGCGTCGGCAGAGGCG 240 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 GAGGCGGCGGGGGAAGCAGAATCCGCCTCCGGTGGCGACGGCGCGCCCGTTCTCCCGGTG 300 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 GAATGCCGATGGAGCGGCCGAGTTCGCAGCTTCGCGGGCGCTGGCGAGGGCGCGGGCGCG 360 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 GCCGCTGTCCCCGCGTGCCCCGCCCCGCGCCGCGGGGGCGGGAAAAAGCCGTCCTCCGCG 420 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 CCGTCGCCTTCGTCCACGGTGGCGACCGCGCCGGCTCATCCATCGGGTCGGCCGTTCGAG 480 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 GAGTACGTTAAGGAGTGGAAGGCGAAGAAGGCGGCGCTCGGCGTGCCGGCCGGACGCTGC 540 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 GAGCTGCCTTTCCTAACCGGCACGCCTAAGGCGGTTGAATGTCGATTATGTTCTAAGATT 600 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 ATTCATCCTGGAGAAGAAATAAAGTGTTCGGTTAGTAGATGTGGAGAATTGTTCCACCTG 660 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 ACTTGTGCAGCAGAAGATACCACAAATTTCATTGCTGAAAGCTTCAAATGCCCTCAACAT 720 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 GGCTGTATGGTCTGTAAGCAAAAGATGTTTTTTTGGCGTTGTGGACGGTGTACGGTTGCA 780 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 GCACATACAAAATGTGCACCATGGCCAGTAATTCATTTAAAAGATGACCAAGGAAGTGCT 840 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 ATCTGTTGGAGGCATCCCTCTGATTGGCTCCTTCAAAATGAGGACTACTTTGTTTAATGG 900 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 TGGCAGAATGCTGACTTGACGAACAGCATAGAGTATTTTGCCGACTACCTGTTCCATATG 960 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 TTAATGAAGACTTCAAGATTGATTCAACCATCAGGGATTTCACTGCAGCTGTCTGCAAAC 1020 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 CACCACACTTTACGTTTATCAGACGCAATGTATATTTAATCAAGAAAAAACGTCCTGATT 1080 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 CTCGCGCGGAAGCTGGGTGCACAAACTGCAGTGCTGATTCTACGTGCAAAGATGACTGCG 1140 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 AATGCAGGGGCCTTTACATGAGTTGTTCCAAGAATTGCCACTGCTCAGATATGTGTACGA 1200 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 ACAAGCCATTCCGCAAGGATAAAAAAATAAAAGCTGTCAAGACAAAACGTTGTGGATGGG 1260 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 GTGCTATTTCATTGGAGCCATTGGAAAAAGGTGATTTTATAATTGAGTATGTTGGTGAAG 1320 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 TCATCAATGATGCAACATGTGAACAAAGGCTTTGGGACATGAAACGGCGAGGTGATAAAA 1380 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 ATTTCTACATGTGTGAAATCAGCAAAGATTTTACAATAGATGCAACATTTAAAGGAAACA 1440 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 CATCACGTTTTCTGAACCACGGTTGTGATCCCAACTGTAAATTAGAAAAATGGCAAGTTG 1500 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 ATGGTGAGACAAGAGTTGGTGTTTTCGCCTCTCGTTCCATCCAAGTTGGAGAACACTTAA 1560 consensus_4814#1 ------------------------------------------------------------ consensus_4814#0 CTTATGACTACAGGTTTGTGCATTTCGGGGAGAAGGTTAAATGCTATTGCGGGGCACAAA 1620 consensus_4814#1 -----------------------------------CACAAAAAGTGTCACGGGGTATGTG 25 *** * * ***** * consensus_4814#0 ATTGTCAAGGTTACCTGGGCAACCAAATAAAGAATCCTACGCAGCGTGCTCTCGCAATTG 1680 consensus_4814#1 --CGCGAGAGACAAT------GTAAGATTCCGGGCCCCAC-CGTGGCTCTCCCCCCTTTC 76 * * * * * ** * ** ** * * *** * * ** consensus_4814#0 CAGCATTGGAG---AACGAGTG-GCTTG-AATCTTTGAA-GATACA-ACAGGACACCTCT 1733 consensus_4814#1 GAGCCTTGGGACGCACCGAGTGCGCTTGGAACCTGCGAACGGTCCACACGGGCCGCCTCT 136 *** **** * ****** ***** ** ** *** * * ** ** ** * ***** consensus_4814#0 GCTTCAA--GACACAAAC-CGATGACAC-ATTTGTTACCTTGGACCA-ACTGTATAGAGG 1788 consensus_4814#1 GCTTCCAACGCCACAAACGCGATGGCCCCATTTGTTCCCCTGGGCCCCACTGTATAGAGG 196 ***** * * ******* ***** * * ******* ** *** ** ************ consensus_4814#0 TACCATTTAACTTGAGAAGCAAACGGAAAATACACCGGATATGCTGGGGATGCAAAAGGA 1848 consensus_4814#1 TACCCTTTACCCTGAGAAGCAAACGGAAAATAACCCGGATATGCTGGGGATGCAAAAGGA 256 **** **** * ******************** ************************** consensus_4814#0 GGAGATCAGCCGTTGCCGTTACATCTCCAACAAGCATACAAGCGTCAGTTACTGAAGCTG 1908 consensus_4814#1 GGAGATCACCCGTTGCCGTTCCATCTCCAGCAAGCATGCAAGCGTCAGTTATTGAAGCTG 316 ******** *********** ******** ******* ************* ******** consensus_4814#0 CTGCTGCTGCTGCTGCTGCATCCCTGCCCGCTTTGCCATGAAGTGGCAATAGCTGAAGTC 1968 consensus_4814#1 CTGCTCTCGCTGCTG---CATCCCTGCCCGCTTTGCCATGAAGTGGCAATAGCTGAAGTC 373 ***** ******* ****************************************** consensus_4814#0 GCTTCTCATCTGTATAATATAGGATGACACATTTCTCACATGAAATTGATTTTTGAACGA 2028 consensus_4814#1 GCTTCTCATCTGTATAATATAGGATGACCCATTTCTCACATGAAATTGATTTTTGAACGA 433 **************************** ******************************* consensus_4814#0 CGATTCTTTTGCATTGCTCCTCCCCACCACCACCAAAACTCCCTGTTGTAATTTGTTACA 2088 consensus_4814#1 CGATTCTTTTGCATTGCTCCTCCCCACCACCACCAAAACTCCCTGTTGTAATTTGTTACA 493 ************************************************************ consensus_4814#0 ATATTCATTTGATTACATAGTTTGTTTAATTTACAGTTGTTCGCTGAGAATACTCGACTA 2148 consensus_4814#1 ATATTCATTTGATTACATAGTTTGTTTAATTTACAGTTGTTCGCTGAGAATACTCGACTA 553 ************************************************************ consensus_4814#0 TCTCATGTAATCAATGTTGTGCTCCAACTCTCGATTGCCTCAGCCCTCAAGTTGAGGCGA 2208 consensus_4814#1 TCTCATGTAATCAATGTTGTGCTCCAACTCTCGATTGCCTCAGCCCTCAAGTTGAGGCGA 613 ************************************************************ consensus_4814#0 GTACATGAGGGCTATTATTGTCTTAGAGAATCTTATACTA-------------------- 2248 consensus_4814#1 GTACATGAGGGCTATTATTGTCTTAGAGAATCTTATACTATTATTTTTCCAAAAAAAAAA 673 **************************************** consensus_4814#0 --- consensus_4814#1 AAA 676 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||