These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 929 fasta sequence [ATATAGCTGAAGAATTATGAACACATACTGGCCTGCTGCTCTGAGCCTTGAAAATTATCTTCTCCGTGTTGAGCAACCTCCTGTTCATGCTCCCCAAATCCTCCACAGAGTGAGGATCGTCCACAAGCCGGATCGAGAAGCTCGACGGTATCTAAAAGCACAAAAATGCCTTCAAGAACAAGAAGAAGCATCAATGGTGAAACAAGGAGGCCTCATTTCCCTAGTTTTCTGAACCAATGGGGGTCAGTCAGTTCGTACGGAGGCCGGGTAGGAGATCTTGACTTCGTACCACGCGGACGGCCGCGTCCCGTCGAGCCTGTACAGCCGGCTTCCGTGGCGCAGCGGCATCGTCTCACCCATCAGCTCCTCGCCGACGGTGAGGACCCTCCCCTCCTCCAAGCTGCAGGGCAAAACACACACACACGGGGAGGTTGAGAAACAGCACGGTGAGGCAGCGTGGATCGTGGCAGAGGAAGGGGACCGACCTGCTTGCTGAAGAGAGCAGCAGCCTGGAGAGCAGGAGGAGCAGGAGGCAGCGGCGTCGGCGGCATGGTGAGGGGAGGGGATGCGGCGGCGGCGGCGGCGGCATGGCCGCGGGATCTCCTGGTCGCCGGCGTCGTCGATGCGTCGAGGCGGCCGGGAGGCGAAGGGCTCTACTGCCTTTGGATAGTTCGTGGGCTATTCGTGGGCTGGTACGGACAGATTATTTTACTTGGGCCTTATTTGGATAGGCTGAGATCATGGCCCATAGCATATGGATGGGCTGGGTTATGGCGCCTTTCGTGGATCTGCAATTCGGCCTTTTCTGGGCTTAGGGTGCTAACGTCAACTTTTTTTTCTCTCTTTTCATTTTGTCCCATCTCATCTGGACACTCCATTTTCACCCACGGACTTTACTTGTAAATTAGTTTTTCGTTGATGAAAATTCT] [+] EMBL AK059908 [ATATAGCTGAAGAATTATGAACACATACTGGCCTGCTGCTCTGAGCCTTGAAAATTATCTTCTCCGTGTTGAGCAACCTCCTGTTCATGCTCCCCAAATCCTCCACAGAGTGAGGATCGTCCACAAGCCGGATCGAGAAGCTCGACGGTATCTAAAAGCACAAAAATGCCTTCAAGAACAAGAAGAAGCATCAATGGTGAAACAAGGAGGCCTCATTTCCCTAGTTTTCTGAACCAATGGGGGTCAGTCAGTTCGTACGGAGGCCGGGTAGGAGATCTTGACTTCGTACCACGCGGACGGCCGCGTCCCGTCGAGCCTGTACAGCCGGCTTCCGTGGCGCAGCGGCATCGTCTCACCCATCAGCTCCTCGCCGACGGTGAGGACCCTCCCCTCCTCCAAGCTGCAGGGCAAAACACACACACACGGGGAGGTTGAGAAACAGCACGGTGAGGCAGCGTGGATCGTGGCAGAGGAAGGGGACCGACCTGCTTGCTGAAGAGAGCAGCAGCCTGGAGAGCAGGAGGAGCAGGAGGCAGCGGCGTCGGCGGCATGGTGAGGGGAGGGGATGCGGCGGCGGCGGCGGCGGCATGGCCGCGGGATCTCCTGGTCGCCGGCGTCGTCGATGCGTCGAGGCGGCCGGGAGGCGAAGGGCTCTACTGCCTTTGGATAGTTCGTGGGCTATTCGTGGGCTGGTACGGACAGATTATTTTACTTGGGCCTTATTTGGATAGGCTGAGATCATGGCCCATAGCATATGGATGGGCTGGGTTATGGCGCCTTTCGTGGATCTGCAATTCGGCCTTTTCTGGGCTTAGGGTGCTAACGTCAACTTTTTTTTCTCTCTTTTCATTTTGTCCCATCTCATCTGGACACTCCATTTTCACCCACGGACTTTACTTGTAAATTAGTTTTTCGTTGATGAAAATTCT] consensusID : consensus_4816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [GTTCTGTGGCTTCGTAGTTAAGTAGCTTGTGCAGAGGGAGAAAATAGGGAGCCACAGATGCCAGCGCAATACAGAACAGAGATCCAATTCCAACCCACCAGGCAAAATGTGGGATCCCAAGCATAAGTTCGTCGCAAACAATGTTGAACATCGCAAGCTCTCTCTCCGGCACATTTGGCTTTGCAACTACCCCTTCAGGCTCCACCGTGACAAGAACATAAACTGGCCTGCTGCTCTGAGCCTTGAAAATTATCTTCTCCGTGTTGAGCAACCTCCTGTTCATGCTCCCCAAATCCTCCACAGAGTGAGGATCGTCCACA] [+] EMBL CF279526 [GTTCTGTGGCTTCGTAGTTAAGTAGCTTGTGCAGAGGGAGAAAATAGGGAGCCACAGATGCCAGCGCAATACAGAACAGAGATCCAATTCCAACCCACCAGGCAAAATGTGGGATCCCAAGCATAAGTTCGTCGCAAACAATGTTGAACATCGCAAGCTCTCTCTCCGGCACATTTGGCTTTGCAACTACCCCTTCAGGCTCCACCGTGACAAGAACATAAACTGGCCTGCTGCTCTGAGCCTTGAAAATTATCTTCTCCGTGTTGAGCAACCTCCTGTTCATGCTCCCCAAATCCTCCACAGAGTGAGGATCGTCCACA] consensusID : consensus_4816#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [AGGAGATCTTGGCTTCGTACCACGCGGACGGCCGCGTCCCGTCGAGCCTGTACAGCCGGCTTCCGTGGCGCAGCGGCATCGTCTCGCCCATCAGCTCCTCGCCGACGGTGAGGACCCTCCCCTCCTCCAAGCTGCTTGCTGAAGAGAGCAGCAGCCTGGAGAGCAGGAGGAGCAGGAGGCAGCGGCGTCGGCGGCATGGTGAGGGGAGGGGATGCGGCGGCGGCGGCGGCGGCATGGCCGCGGGATCTCCTGGTCGCCGGCGTCGTCGATGCGTCGAGGCTTTCTA] [-] EMBL CF279525 [AGGAGATCTTGGCTTCGTACCACGCGGACGGCCGCGTCCCGTCGAGCCTGTACAGCCGGCTTCCGTGGCGCAGCGGCATCGTCTCGCCCATCAGCTCCTCGCCGACGGTGAGGACCCTCCCCTCCTCCAAGCTGCTTGCTGAAGAGAGCAGCAGCCTGGAGAGCAGGAGGAGCAGGAGGCAGCGGCGTCGGCGGCATGGTGAGGGGAGGGGATGCGGCGGCGGCGGCGGCGGCATGGCCGCGGGATCTCCTGGTCGCCGGCGTCGTCGATGCGTCGAGGCTTTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4816#0 ATATAGCTGAAGAATTATGAACACATACTGGCCTGCTGCTCTGAGCCTTGAAAATTATCT 60 consensus_4816#2 ------------------------------------------------------------ consensus_4816#1 ------------------------------------------------------------ consensus_4816#0 TCTCCGTGTTGAGCAACCTCCTGTTCATGCTCCCCAAATCCTCCACAGAGTGAGGATCGT 120 consensus_4816#2 ------------------------------------------------------------ consensus_4816#1 ------------------------------------------------------------ consensus_4816#0 CCACAAGCCGGATCGAGAAGCTCGACGGTATCTAAAAGCACAAAAATGCCTTCAAGAACA 180 consensus_4816#2 ------------------------------------------------------------ consensus_4816#1 ------------------------------------------------------------ consensus_4816#0 AGAAGAAGCATCAATGGTGAAACAAGGAGGCCTCATTTCCCTAGTTTTCTGAACCAATGG 240 consensus_4816#2 ------------------------------------------------------------ consensus_4816#1 ---------------------------------------------------------GTT 3 consensus_4816#0 GGGTCAGTCAGTTCGTACGGAGGCCGGGTAGGAGATCTTGACTTCGTACCACGCGGACGG 300 consensus_4816#2 -----------------------------AGGAGATCTTGGCTTCGTACCACGCGGACGG 31 consensus_4816#1 CTGTGGCTTCGTAGTTAAGTAGCTTGTGCAGAGGGAGAAAATAGGGAGCCACAGATGCCA 63 ** * * **** * consensus_4816#0 CCGCGTCCCGTCGAGCCTGTACAG--CCGGCTTCCGTGGCGCAGCGGCATCGTCTCACCC 358 consensus_4816#2 CCGCGTCCCGTCGAGCCTGTACAG--CCGGCTTCCGTGGCGCAGCGGCATCGTCTCGCCC 89 consensus_4816#1 GCGCAATACAGAACAGAGATCCAATTCCAACCCACCAGGCAAAATG-TGGGATCCCAAGC 122 *** * * ** ** * * *** * * ** * * consensus_4816#0 ATCAGCTCCTCGCCGACGGTGAGGACCCTCCCCTCCTCCAAGCTGCAGGGCAAAACACAC 418 consensus_4816#2 ATCAGCTCCTCGCCGACGGTGAGGACCCTCCCCTCCTCCAAGCTGC-------------- 135 consensus_4816#1 ATAAGTTCGTCGCAAACAATGTTGAACATCGCAAGCTCTCT-CTCCGGCACA-------- 173 ** ** ** **** ** ** ** * ** * *** ** * consensus_4816#0 ACACACGGGGAGGTTGAGAAACAGCACGGTGAGGCAGCGTGGATCGTGGCAGAGGAAGGG 478 consensus_4816#2 ------------------------------------------------------------ consensus_4816#1 ------------------------------------------------------------ consensus_4816#0 GACCGACCTGCTTGCTGAAGAGAGCAGCAGCCTGGAGAGCAGGAGGAGCAGGAGGCAGCG 538 consensus_4816#2 -----------TTGCTGAAGAGAGCAGCAGCCTGGAGAGCAGGAGGAGCAGGAGGCAGCG 184 consensus_4816#1 ----------TTTGGCTTTGCAACTACCCCTTCAGGCTCCACCGTGACAAGAACATAAAC 223 *** * * * * * ** ** ** * * consensus_4816#0 GCGTCGGCGGCATGGTGAGGGGAGGGGATGCGGCGGCGGCGGCGGCGGCATGGCCGCGGG 598 consensus_4816#2 GCGTCGGCGGCATGGTGAGGGGAGGGGATGCGGCGGCGGCGGCGGCGGCATGGCCGCGGG 244 consensus_4816#1 TGGCCTGCTGCTC--TGAGCCTTGAAAAT-TATCTTCTCCG--TGTTGAGCAACCTCCTG 278 * * ** ** **** * ** * * ** * * ** * * consensus_4816#0 ATCTCCTGGTCGCCGGCGTCGTCGATGCGTCGAGGCGGCCGGGAGGCGAAGGGCTCTACT 658 consensus_4816#2 ATCTCCTGGTCGCCGGCGTCGTCGATGCGTCGAGGCTTTCTA------------------ 286 consensus_4816#1 --TTCATGCTCCCCAAATCCTCCACAGAGTGAGGATCGTCCACA---------------- 320 ** ** ** ** * * * ** * * consensus_4816#0 GCCTTTGGATAGTTCGTGGGCTATTCGTGGGCTGGTACGGACAGATTATTTTACTTGGGC 718 consensus_4816#2 ------------------------------------------------------------ consensus_4816#1 ------------------------------------------------------------ consensus_4816#0 CTTATTTGGATAGGCTGAGATCATGGCCCATAGCATATGGATGGGCTGGGTTATGGCGCC 778 consensus_4816#2 ------------------------------------------------------------ consensus_4816#1 ------------------------------------------------------------ consensus_4816#0 TTTCGTGGATCTGCAATTCGGCCTTTTCTGGGCTTAGGGTGCTAACGTCAACTTTTTTTT 838 consensus_4816#2 ------------------------------------------------------------ consensus_4816#1 ------------------------------------------------------------ consensus_4816#0 CTCTCTTTTCATTTTGTCCCATCTCATCTGGACACTCCATTTTCACCCACGGACTTTACT 898 consensus_4816#2 ------------------------------------------------------------ consensus_4816#1 ------------------------------------------------------------ consensus_4816#0 TGTAAATTAGTTTTTCGTTGATGAAAATTCT 929 consensus_4816#2 ------------------------------- consensus_4816#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||