cluster # 485

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Oryza sativa
cluster # 485 cluster # 485 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_485#0 length = 689 sequences # 1

consensus_485#1 length = 664 sequences # 1

consensusID : consensus_485#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence

                              [TTTTTTTTTTTTTGGAAACTAAACAAGGCTGCTTTGATTAGCCTGTTTTTTTCTCAGCATCAAAGGTCACTGGCAAGCAGGAAGAGGCAGGCACATGGGAACAACCAGGCAAAACAAGAATGGCTTTAACAGCTAGCTTCACATTCCCCGACAGAGTTTCTACAAGATGTGTATAGTCCATCCTTCCCTCCATTGGGGATCTAGCAAAGAAAGGTGTAGGATCGACAGCGAAAACAAAGGCATCTAACACTAGCAGAGCAAGTGGGATCGGTAGCCAACTCCATCGATCCGCCNGCTGCTCGCCCGCCACAATACGGCAGGGGCAGCAAAACTTGCTTTAGAACAAGGATACAAGACCTGTACATATGTGGAGAGAACCTGCCTGAATTCTGCTGGAGAGGCAGGAAATACAGCCCAAGAAGAACAGAAGAATTACTTTGCGGATCGCTGTGATGCAGATGGCATTTAGCATTTGAATGCTACTAGCTCGGATTTGATGAGGAACCAGCAAAAGGAGTGTGCTGGTGTGAGGGCCACTGGACCCTTTCTGGAGGGCAGGGGGCCTGGGCAGGATGAGCGATGAATGTTGGTACATCGGGTCCTGGCCCCCTTGGCTCGTGCTCTGGGCACCTAGAGCAGCTTATCGATGCCGGGGACTTCGGGGGGGGGGCCGGGAACCCATTTCGCCC]

[+] EMBL CA759751             [TTTTTTTTTTTTTGGAAACTAAACAAGGCTGCTTTGATTAGCCTGTTTTTTTCTCAGCATCAAAGGTCACTGGCAAGCAGGAAGAGGCAGGCACATGGGAACAACCAGGCAAAACAAGAATGGCTTTAACAGCTAGCTTCACATTCCCCGACAGAGTTTCTACAAGATGTGTATAGTCCATCCTTCCCTCCATTGGGGATCTAGCAAAGAAAGGTGTAGGATCGACAGCGAAAACAAAGGCATCTAACACTAGCAGAGCAAGTGGGATCGGTAGCCAACTCCATCGATCCGCCNGCTGCTCGCCCGCCACAATACGGCAGGGGCAGCAAAACTTGCTTTAGAACAAGGATACAAGACCTGTACATATGTGGAGAGAACCTGCCTGAATTCTGCTGGAGAGGCAGGAAATACAGCCCAAGAAGAACAGAAGAATTACTTTGCGGATCGCTGTGATGCAGATGGCATTTAGCATTTGAATGCTACTAGCTCGGATTTGATGAGGAACCAGCAAAAGGAGTGTGCTGGTGTGAGGGCCACTGGACCCTTTCTGGAGGGCAGGGGGCCTGGGCAGGATGAGCGATGAATGTTGGTACATCGGGTCCTGGCCCCCTTGGCTCGTGCTCTGGGCACCTAGAGCAGCTTATCGATGCCGGGGACTTCGGGGGGGGGGCCGGGAACCCATTTCGCCC]




>consensus_485#0
TTTTTTTTTTTTTGGAAACTAAACAAGGCTGCTTTGATTAGCCTGTTTTTTTCTCAGCAT
CAAAGGTCACTGGCAAGCAGGAAGAGGCAGGCACATGGGAACAACCAGGCAAAACAAGAA
TGGCTTTAACAGCTAGCTTCACATTCCCCGACAGAGTTTCTACAAGATGTGTATAGTCCA
TCCTTCCCTCCATTGGGGATCTAGCAAAGAAAGGTGTAGGATCGACAGCGAAAACAAAGG
CATCTAACACTAGCAGAGCAAGTGGGATCGGTAGCCAACTCCATCGATCCGCCNGCTGCT
CGCCCGCCACAATACGGCAGGGGCAGCAAAACTTGCTTTAGAACAAGGATACAAGACCTG
TACATATGTGGAGAGAACCTGCCTGAATTCTGCTGGAGAGGCAGGAAATACAGCCCAAGA
AGAACAGAAGAATTACTTTGCGGATCGCTGTGATGCAGATGGCATTTAGCATTTGAATGC
TACTAGCTCGGATTTGATGAGGAACCAGCAAAAGGAGTGTGCTGGTGTGAGGGCCACTGG
ACCCTTTCTGGAGGGCAGGGGGCCTGGGCAGGATGAGCGATGAATGTTGGTACATCGGGT
CCTGGCCCCCTTGGCTCGTGCTCTGGGCACCTAGAGCAGCTTATCGATGCCGGGGACTTC
GGGGGGGGGGCCGGGAACCCATTTCGCCC

consensusID : consensus_485#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [GGCTTTAACAGCTAGCTTCACATTCCCCGACAGAGTTTCTACAAGATGTGTATAGTCCATCCTTCCCTCCATTGGGGATCTAGCAAAGAAAGGTGTAGGATCGACAGCGAAAACAAAGGCATCTAACACTAGCAGAGCAAGTGGGATCGGTAGCCAACTCCATCGATCCGCCGGCTGCTCGCCCGCCACAATACGGCAGGGGCAGCAGAACTTGCTTTAGAACAAAGATACAAGACCTGTACATATGTGGAGAGAACCTGCCTGAATTCTGCTGGAGAGGCAGGAAATACAGCCAGAGAAGAACAGAAGAATTACTTTGCGGATCGCTGTGATGCAGATGGCATTTAGCATTTGAATGCTACTAGCTCGGATTTGATGAGGAACCAGCAAAAGGAGTGGGCTGGTGTGAGGGCCACTGGACCCTTTCTGGAGGGCAGGGTGCTGGGGCAGGATGAGCGATGAATGTTGGTACATCGTGTCCTGGCATTAAAACTGAGACACCTTTGGCGTAAACAGGTATCTCGGGGGACGCGCCGCCGTCGAGCTTCCTGGCCGCCTCGAGATCCGAGCCGCCAGGGAAGGCGGCCTCGCCGACGAGTGGAGGTGATGCAGGAGGAGTGGAGGAGACGAACTGGGAGGAGAGGAGGGGGTGGTCAGTGGTGGT]

[-] EMBL AK107834             [GGCTTTAACAGCTAGCTTCACATTCCCCGACAGAGTTTCTACAAGATGTGTATAGTCCATCCTTCCCTCCATTGGGGATCTAGCAAAGAAAGGTGTAGGATCGACAGCGAAAACAAAGGCATCTAACACTAGCAGAGCAAGTGGGATCGGTAGCCAACTCCATCGATCCGCCGGCTGCTCGCCCGCCACAATACGGCAGGGGCAGCAGAACTTGCTTTAGAACAAAGATACAAGACCTGTACATATGTGGAGAGAACCTGCCTGAATTCTGCTGGAGAGGCAGGAAATACAGCCAGAGAAGAACAGAAGAATTACTTTGCGGATCGCTGTGATGCAGATGGCATTTAGCATTTGAATGCTACTAGCTCGGATTTGATGAGGAACCAGCAAAAGGAGTGGGCTGGTGTGAGGGCCACTGGACCCTTTCTGGAGGGCAGGGTGCTGGGGCAGGATGAGCGATGAATGTTGGTACATCGTGTCCTGGCATTAAAACTGAGACACCTTTGGCGTAAACAGGTATCTCGGGGGACGCGCCGCCGTCGAGCTTCCTGGCCGCCTCGAGATCCGAGCCGCCAGGGAAGGCGGCCTCGCCGACGAGTGGAGGTGATGCAGGAGGAGTGGAGGAGACGAACTGGGAGGAGAGGAGGGGGTGGTCAGTGGTGGT]




>consensus_485#1
GGCTTTAACAGCTAGCTTCACATTCCCCGACAGAGTTTCTACAAGATGTGTATAGTCCAT
CCTTCCCTCCATTGGGGATCTAGCAAAGAAAGGTGTAGGATCGACAGCGAAAACAAAGGC
ATCTAACACTAGCAGAGCAAGTGGGATCGGTAGCCAACTCCATCGATCCGCCGGCTGCTC
GCCCGCCACAATACGGCAGGGGCAGCAGAACTTGCTTTAGAACAAAGATACAAGACCTGT
ACATATGTGGAGAGAACCTGCCTGAATTCTGCTGGAGAGGCAGGAAATACAGCCAGAGAA
GAACAGAAGAATTACTTTGCGGATCGCTGTGATGCAGATGGCATTTAGCATTTGAATGCT
ACTAGCTCGGATTTGATGAGGAACCAGCAAAAGGAGTGGGCTGGTGTGAGGGCCACTGGA
CCCTTTCTGGAGGGCAGGGTGCTGGGGCAGGATGAGCGATGAATGTTGGTACATCGTGTC
CTGGCATTAAAACTGAGACACCTTTGGCGTAAACAGGTATCTCGGGGGACGCGCCGCCGT
CGAGCTTCCTGGCCGCCTCGAGATCCGAGCCGCCAGGGAAGGCGGCCTCGCCGACGAGTG
GAGGTGATGCAGGAGGAGTGGAGGAGACGAACTGGGAGGAGAGGAGGGGGTGGTCAGTGG
TGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_485#0      TTTTTTTTTTTTTGGAAACTAAACAAGGCTGCTTTGATTAGCCTGTTTTTTTCTCAGCAT 60
consensus_485#1      ------------------------------------------------------------
                                                                                 

consensus_485#0      CAAAGGTCACTGGCAAGCAGGAAGAGGCAGGCACATGGGAACAACCAGGCAAAACAAGAA 120
consensus_485#1      ------------------------------------------------------------
                                                                                 

consensus_485#0      TGGCTTTAACAGCTAGCTTCACATTCCCCGACAGAGTTTCTACAAGATGTGTATAGTCCA 180
consensus_485#1      -GGCTTTAACAGCTAGCTTCACATTCCCCGACAGAGTTTCTACAAGATGTGTATAGTCCA 59
                      ***********************************************************

consensus_485#0      TCCTTCCCTCCATTGGGGATCTAGCAAAGAAAGGTGTAGGATCGACAGCGAAAACAAAGG 240
consensus_485#1      TCCTTCCCTCCATTGGGGATCTAGCAAAGAAAGGTGTAGGATCGACAGCGAAAACAAAGG 119
                     ************************************************************

consensus_485#0      CATCTAACACTAGCAGAGCAAGTGGGATCGGTAGCCAACTCCATCGATCCGCCNGCTGCT 300
consensus_485#1      CATCTAACACTAGCAGAGCAAGTGGGATCGGTAGCCAACTCCATCGATCCGCCGGCTGCT 179
                     ***************************************************** ******

consensus_485#0      CGCCCGCCACAATACGGCAGGGGCAGCAAAACTTGCTTTAGAACAAGGATACAAGACCTG 360
consensus_485#1      CGCCCGCCACAATACGGCAGGGGCAGCAGAACTTGCTTTAGAACAAAGATACAAGACCTG 239
                     **************************** ***************** *************

consensus_485#0      TACATATGTGGAGAGAACCTGCCTGAATTCTGCTGGAGAGGCAGGAAATACAGCCCAAGA 420
consensus_485#1      TACATATGTGGAGAGAACCTGCCTGAATTCTGCTGGAGAGGCAGGAAATACAGCCAGAGA 299
                     *******************************************************  ***

consensus_485#0      AGAACAGAAGAATTACTTTGCGGATCGCTGTGATGCAGATGGCATTTAGCATTTGAATGC 480
consensus_485#1      AGAACAGAAGAATTACTTTGCGGATCGCTGTGATGCAGATGGCATTTAGCATTTGAATGC 359
                     ************************************************************

consensus_485#0      TACTAGCTCGGATTTGATGAGGAACCAGCAAAAGGAGTGTGCTGGTGTGAGGGCCACTGG 540
consensus_485#1      TACTAGCTCGGATTTGATGAGGAACCAGCAAAAGGAGTGGGCTGGTGTGAGGGCCACTGG 419
                     *************************************** ********************

consensus_485#0      ACCCTTTCTGGAGGGCAGGGGGCCTGGGCAGGATGAGCGATGAATGTTGGTACATCGGGT 600
consensus_485#1      ACCCTTTCTGGAGGGCAGGGTGCTGGGGCAGGATGAGCGATGAATGTTGGTACATCGTGT 479
                     ******************** **  ******************************** **

consensus_485#0      CCTGGCCCCC---TTGGCTCGTGCTCTGGGCACCTAGAGCAGCTTATCGATGCCGGGGAC 657
consensus_485#1      CCTGGCATTAAAACTGAGACACCTTTGGCGTAAACAG-GTATCTCGGGGGACGCGCCGCC 538
                     ******        **   *    *  * * *   ** * * **    *    **  * *

consensus_485#0      TTCGGGG-----GGGGGGCCGGGAACCCATTTCGCCC----------------------- 689
consensus_485#1      GTCGAGCTTCCTGGCCGCCTCGAGATCCGAGCCGCCAGGGAAGGCGGCCTCGCCGACGAG 598
                      *** *      **  * *  *  * **    ****                        

consensus_485#0      ------------------------------------------------------------
consensus_485#1      TGGAGGTGATGCAGGAGGAGTGGAGGAGACGAACTGGGAGGAGAGGAGGGGGTGGTCAGT 658
                                                                                 

consensus_485#0      ------
consensus_485#1      GGTGGT 664