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Oryza sativa
cluster # 4863 cluster # 4863       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4863#0 length = 1433 sequences # 1  
consensus_4863#1 length = 940 sequences # 2  

consensusID : consensus_4863#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1433
fasta sequence
                              [CTACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGACCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGCCAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAGACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGGCCAAGAAGGTGGAGTTCGCCGGTGGAAAAGACGACGGCGACAACGACATCAACTGGCAAGATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCAACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGTTTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATGACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGATATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGGGTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATCCCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGAAGAGTAACACTTGGGTGAAAGAATATGAGATCAGTCTAAAGGAGTTGTGGAATCAACAAGAATTTTGTAATGCAAACCTGCCGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTGCATGCAGTTTGGCGCCAGTCGTCGGTGGCTCTGATTTCATAAGTTACCTCCCTCATGATACTCTTTATGACAGAGATGTGCTAAGCTCAGTTGTATCCCAAAGTATGTCAGGCTGTTATCAGTTCGGCCCTGCAACTGGTTTGGTATGAAGGGACTGCAATCTGGAGGTGGATTGGGACTGTTGGGCAACTGTAGCAATTTGGAAGGGAGGCTGCTGGTGACCATTTTGAAAGGGAAATTTTGAAAGGGAAGCTAATAGTAGTTGACACACATCTTGGTCTTTTATGTGGGAACACTTTGTTAGCTGTTACACTTGTTCTATCATCTGTTCTTAGTACTGATATGTTAATTTATGGCGCTGGCCGTCAGCCGGTTGTGGTATGTTAATCTATAGAACATAATAATCCTACCTA]

[+] EMBL AK106804             [CTACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGACCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGCCAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAGACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGGCCAAGAAGGTGGAGTTCGCCGGTGGAAAAGACGACGGCGACAACGACATCAACTGGCAAGATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCAACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGTTTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATGACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGATATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGGGTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATCCCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGAAGAGTAACACTTGGGTGAAAGAATATGAGATCAGTCTAAAGGAGTTGTGGAATCAACAAGAATTTTGTAATGCAAACCTGCCGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTGCATGCAGTTTGGCGCCAGTCGTCGGTGGCTCTGATTTCATAAGTTACCTCCCTCATGATACTCTTTATGACAGAGATGTGCTAAGCTCAGTTGTATCCCAAAGTATGTCAGGCTGTTATCAGTTCGGCCCTGCAACTGGTTTGGTATGAAGGGACTGCAATCTGGAGGTGGATTGGGACTGTTGGGCAACTGTAGCAATTTGGAAGGGAGGCTGCTGGTGACCATTTTGAAAGGGAAATTTTGAAAGGGAAGCTAATAGTAGTTGACACACATCTTGGTCTTTTATGTGGGAACACTTTGTTAGCTGTTACACTTGTTCTATCATCTGTTCTTAGTACTGATATGTTAATTTATGGCGCTGGCCGTCAGCCGGTTGTGGTATGTTAATCTATAGAACATAATAATCCTACCTA]


>consensus_4863#0 CTACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTG CTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGA CCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGC CAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAG ACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGG CCAAGAAGGTGGAGTTCGCCGGTGGAAAAGACGACGGCGACAACGACATCAACTGGCAAG ATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCA ACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGT TTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATG ACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGAT ATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGG GTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATC CCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGAAGAGTAACACTTGGGTGAAAG AATATGAGATCAGTCTAAAGGAGTTGTGGAATCAACAAGAATTTTGTAATGCAAACCTGC CGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACT TCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACT ACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTG CATGCAGTTTGGCGCCAGTCGTCGGTGGCTCTGATTTCATAAGTTACCTCCCTCATGATA CTCTTTATGACAGAGATGTGCTAAGCTCAGTTGTATCCCAAAGTATGTCAGGCTGTTATC AGTTCGGCCCTGCAACTGGTTTGGTATGAAGGGACTGCAATCTGGAGGTGGATTGGGACT GTTGGGCAACTGTAGCAATTTGGAAGGGAGGCTGCTGGTGACCATTTTGAAAGGGAAATT TTGAAAGGGAAGCTAATAGTAGTTGACACACATCTTGGTCTTTTATGTGGGAACACTTTG TTAGCTGTTACACTTGTTCTATCATCTGTTCTTAGTACTGATATGTTAATTTATGGCGCT GGCCGTCAGCCGGTTGTGGTATGTTAATCTATAGAACATAATAATCCTACCTA



consensusID : consensus_4863#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 940
fasta sequence
                              [TACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGACCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGCCAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAGACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGGCCAAGAAGGTGGAGTTCGCCGGTGGAGAAGACGACGGCGACAACGACATCAACTGGCAAGATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCAACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGTTTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATGACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGATATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGGGTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATCCCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGCCGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTGCA]

[-] EMBL AK105547             [TACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGACCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGCCAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAGACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGGCCAAGAAGGTGGAGTTCGCCGGTGGAGAAGACGACGGCGACAACGACATCAACTGGCAAGATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCAACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGTTTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATGACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGATATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGGGTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATCCCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGCCGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTGCA]
[+] EMBL AA750163             [     CATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCAT  CGCGNSGCCACCCCGGCTAT ATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_4863#1 TACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGC TGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGAC CAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGCC AAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAGA CGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGGC CAAGAAGGTGGAGTTCGCCGGTGGAGAAGACGACGGCGACAACGACATCAACTGGCAAGA TGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCAA CCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGTT TGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATGA CCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGATA TCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGGG TTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATCC CGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGCCGATGAGTATGACACCAATGTA CCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCA AGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAG CTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4863#0      CTACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTG 60
consensus_4863#1      -TACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTG 59
                       ***********************************************************

consensus_4863#0      CTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGA 120
consensus_4863#1      CTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGA 119
                      ************************************************************

consensus_4863#0      CCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGC 180
consensus_4863#1      CCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGC 179
                      ************************************************************

consensus_4863#0      CAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAG 240
consensus_4863#1      CAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAG 239
                      ************************************************************

consensus_4863#0      ACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGG 300
consensus_4863#1      ACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGG 299
                      ************************************************************

consensus_4863#0      CCAAGAAGGTGGAGTTCGCCGGTGGAAAAGACGACGGCGACAACGACATCAACTGGCAAG 360
consensus_4863#1      CCAAGAAGGTGGAGTTCGCCGGTGGAGAAGACGACGGCGACAACGACATCAACTGGCAAG 359
                      ************************** *********************************

consensus_4863#0      ATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCA 420
consensus_4863#1      ATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCA 419
                      ************************************************************

consensus_4863#0      ACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGT 480
consensus_4863#1      ACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGT 479
                      ************************************************************

consensus_4863#0      TTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATG 540
consensus_4863#1      TTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATG 539
                      ************************************************************

consensus_4863#0      ACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGAT 600
consensus_4863#1      ACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGAT 599
                      ************************************************************

consensus_4863#0      ATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGG 660
consensus_4863#1      ATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGG 659
                      ************************************************************

consensus_4863#0      GTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATC 720
consensus_4863#1      GTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATC 719
                      ************************************************************

consensus_4863#0      CCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGAAGAGTAACACTTGGGTGAAAG 780
consensus_4863#1      CCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTG---------------------- 757
                      **************************************                      

consensus_4863#0      AATATGAGATCAGTCTAAAGGAGTTGTGGAATCAACAAGAATTTTGTAATGCAAACCTGC 840
consensus_4863#1      -----------------------------------------------------------C 758
                                                                                 *

consensus_4863#0      CGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACT 900
consensus_4863#1      CGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACT 818
                      ************************************************************

consensus_4863#0      TCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACT 960
consensus_4863#1      TCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACT 878
                      ************************************************************

consensus_4863#0      ACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTG 1020
consensus_4863#1      ACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTG 938
                      ************************************************************

consensus_4863#0      CATGCAGTTTGGCGCCAGTCGTCGGTGGCTCTGATTTCATAAGTTACCTCCCTCATGATA 1080
consensus_4863#1      CA---------------------------------------------------------- 940
                      **                                                          

consensus_4863#0      CTCTTTATGACAGAGATGTGCTAAGCTCAGTTGTATCCCAAAGTATGTCAGGCTGTTATC 1140
consensus_4863#1      ------------------------------------------------------------
                                                                                  

consensus_4863#0      AGTTCGGCCCTGCAACTGGTTTGGTATGAAGGGACTGCAATCTGGAGGTGGATTGGGACT 1200
consensus_4863#1      ------------------------------------------------------------
                                                                                  

consensus_4863#0      GTTGGGCAACTGTAGCAATTTGGAAGGGAGGCTGCTGGTGACCATTTTGAAAGGGAAATT 1260
consensus_4863#1      ------------------------------------------------------------
                                                                                  

consensus_4863#0      TTGAAAGGGAAGCTAATAGTAGTTGACACACATCTTGGTCTTTTATGTGGGAACACTTTG 1320
consensus_4863#1      ------------------------------------------------------------
                                                                                  

consensus_4863#0      TTAGCTGTTACACTTGTTCTATCATCTGTTCTTAGTACTGATATGTTAATTTATGGCGCT 1380
consensus_4863#1      ------------------------------------------------------------
                                                                                  

consensus_4863#0      GGCCGTCAGCCGGTTGTGGTATGTTAATCTATAGAACATAATAATCCTACCTA 1433
consensus_4863#1      -----------------------------------------------------
                                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)