These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4869#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 812 fasta sequence [TCTTTTAAGGTTCCATCATTTGTAGTATCTTATATATCATACCTTATTACATGAAGATATATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTCCAGGAGTCATCTCTTCTTATACGTGCTTCTTGAGATGAATGCTCCATGAAAACCATAGGGTACTCTGTGTTTCAATACTATCTTAGCAACTGGTCCATTCTCAAATCTTTGTGCATCGATGATATGTGCCTGTGAATTGTTGATTTCCTCGTCATGTACAAAAGAGATTATCCATCCGTCATCCTCATTTGCTCCATTGACCTTCGGAACAAAAGTTGCTCCTGAGCAAAATTTGTTTCTACCAAGATGATGGGACTCTACATTTATTAGATCTTGACAGGGCTTAATTTTGTCTTCAAGATATAGTTTTGCAAAACCTCCAAATTTTGGTCGCACTATTCCACAACCACCTGCCAAGCTCCCTTGGAAATCCACCACTTGTGCATATGCATACTTGTGATTCAAGCCAACATATTTGTCATTGATGACTGGGAATTCCATATCAATACCTGCTCCAGTTAAGTATTTTTCTATAACAGACATGCTTTTCATGTTTAACCTCCACTCGTACAAGCGAGAAAAATATTCCTCATTGAGTCCTTGGTTAGCTGGTTCTTCATCAACAGAGTGCTCAAGTACTGTAGGACCCATAAGAATGGAACCTGGCACTCGAAATCCCCTTATAACAACCTCATTATGTTCCTCAAAGCAGTTGACAAGATGGATAGTGCAGAATGGTTCTACGTCAAACCAAATTACTG] [+] EMBL CB625952 [TCTTTTAAGGTTCCATCATTTGTAGTATCTTATATATCATACCTTATTACATGAAGATATATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTCCAGGAGTCATCTCTTCTTATACGTGCTTCTTGAGATGAATGCTCCATGAAAACCATAGGGTACTCTGTGTTTCAATACTATCTTAGCAACTGGTCCATTCTCAAATCTTTGTGCATCGATGATATGTGCCTGTGAATTGTTGATTTCCTCGTCATGTACAAAAGAGATTATCCATCCGTCATCCTCATTTGCTCCATTGACCTTCGGAACAAAAGTTGCTCCTGAGCAAAATTTGTTTCTACCAAGATGATGGGACTCTACATTTATTAGATCTTGACAGGGCTTAATTTTGTCTTCAAGATATAGTTTTGCAAAACCTCCAAATTTTGGTCGCACTATTCCACAACCACCTGCCAAGCTCCCTTGGAAATCCACCACTTGTGCATATGCATACTTGTGATTCAAGCCAACATATTTGTCATTGATGACTGGGAATTCCATATCAATACCTGCTCCAGTTAAGTATTTTTCTATAACAGACATGCTTTTCATGTTTAACCTCCACTCGTACAAGCGAGAAAAATATTCCTCATTGAGTCCTTGGTTAGCTGGTTCTTCATCAACAGAGTGCTCAAGTACTGTAGGACCCATAAGAATGGAACCTGGCACTCGAAATCCCCTTATAACAACCTCATTATGTTCCTCAAAGCAGTTGACAAGATGGATAGTGCAGAATGGTTCTACGTCAAACCAAATTACTG] consensusID : consensus_4869#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence [GGATTAAATTTTGATATATTGCTTACAATTGTAAATAGAAACATATATTCAAGTTCTATACTTGCTTATGTTGCAGTTTCATGTTGGATCCCGTTATATGTTTCGCATCTAGAACTTGATTTCCTAGGTACGTCCCTAAAGAGAAACACAATCAATCACATCATTTGTAGTATCTTATATATCATATCAAATTACATGAAGATATATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTCCAGGAGTCATCTCTTCTTATACGTGCTTCTTGAGATGAATGCTCCATGAAAACCATAGGGTACTCTGTGTTTCAATACTATCTTAGCAACTGGTCCATTCTCAAATCTTTGTGCATCGATGATATGTGCCTGTGAATTGTTGATTTCCTCGTCATGTACAAAAGAGATTATCCATCCGTCATCCTCATTTGCTCCATTGACCTTCGGAACAAAAGTTGCTCCTGAGCAAAATTTGTTTCTACCAAGATGATGGTACTCTACATTTATTAGATCTTGACAGGGCTTAATTTTGTCTTCAAGATATAGTTTTGCAAAACCTCCAAATTTTGGTCGCACTATTCCACAACCACCTGCCAAGCTCCCTTGGAAATCCACCACTTGTGCATATGCATACTTGTGATTCAAGCCAACATATTTGTCATTGATGACTGGGAATTCCATATCAATACCTGCTCCAGTTAAGTATTTTTCTATAACAGACAT] [+] EMBL CB622792 [GGATTAAATTTTGATATATTGCTTACAATTGTAAATAGAAACATATATTCAAGTTCTATACTTGCTTATGTTGCAGTTTCATGTTGGATCCCGTTATATGTTTCGCATCTAGAACTTGATTTCCTAGGTACGTCCCTAAAGAGAAACACAATCAATCACATCATTTGTAGTATCTTATATATCATATCAAATTACATGAAGATATATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTCCAGGAGTCATCTCTTCTTATACGTGCTTCTTGAGATGAATGCTCCATGAAAACCATAGGGTACTCTGTGTTTCAATACTATCTTAGCAACTGGTCCATTCTCAAATCTTTGTGCATCGATGATATGTGCCTGTGAATTGTTGATTTCCTCGTCATGTACAAAAGAGATTATCCATCCGTCATCCTCATTTGCTCCATTGACCTTCGGAACAAAAGTTGCTCCTGAGCAAAATTTGTTTCTACCAAGATGATGGTACTCTACATTTATTAGATCTTGACAGGGCTTAATTTTGTCTTCAAGATATAGTTTTGCAAAACCTCCAAATTTTGGTCGCACTATTCCACAACCACCTGCCAAGCTCCCTTGGAAATCCACCACTTGTGCATATGCATACTTGTGATTCAAGCCAACATATTTGTCATTGATGACTGGGAATTCCATATCAATACCTGCTCCAGTTAAGTATTTTTCTATAACAGACAT] consensusID : consensus_4869#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [TTTTTTTTTTTAGGATTAAATTTTGATATATTGCTTACAATTGTAAATAGAAGCATATATTCAAGTTCTATACTTGCTTATGTTGCAGTTTCATGTTGGATCCCGTTATATGTTTCGCATCTAGAACTTGATTTCCTAGGTACGTCCCTAAAGAGAAACACAATCAATCACATCATTTGTAGTATCTTATATATCATATCAAATTACATGAAGATATATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTTGTCTCGTCCTCT] [+] EMBL CA761100 [TTTTTTTTTTTAGGATTAAATTTTGATATATTGCTTACAATTGTAAATAGAAGCATATATTCAAGTTCTATACTTGCTTATGTTGCAGTTTCATGTTGGATCCCGTTATATGTTTCGCATCTAGAACTTGATTTCCTAGGTACGTCCCTAAAGAGAAACACAATCAATCACATCATTTGTAGTATCTTATATATCATATCAAATTACATGAAGATATATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTTGTCTCGTCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4869#1 ------------------------------------------------------------ consensus_4869#2 ------------------------------------------------------------ consensus_4869#0 TCTTTTAAGGTTCCATCATTTGTAGTATCTTATATATCATACCTTATTACATGAAGATAT 60 consensus_4869#1 ------------------------------------------------------------ consensus_4869#2 ----------------------------------------------------------TT 2 consensus_4869#0 ATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTCCAGGAGTCA 120 consensus_4869#1 ----------GGATTAAATTTTGATAT-ATTGCTTAC--AATTGTAAATAGAAACATATA 47 consensus_4869#2 TTTTTTTTTAGGATTAAATTTTGATAT-ATTGCTTAC--AATTGTAAATAGAAGCATATA 59 consensus_4869#0 TCTCTTCTTATACGTGCTTCTTGAGATGAATGCTCCATGAAAACCATAGGGTACTCTGTG 180 * * **** ** * **** ** * * * * * * consensus_4869#1 TTCAAGTTCTATACTTGCTTATGTTGCAGTTTCATGTTGGATCCCGTTATATGTTTCGCA 107 consensus_4869#2 TTCAAGTTCTATACTTGCTTATGTTGCAGTTTCATGTTGGATCCCGTTATATGTTTCGCA 119 consensus_4869#0 TTTCAATACTATCTTAGCAACTGGTCCATTCTCAAATCTTTGTGCATCG-ATGATATGTG 239 ** * * **** * ** ** * ** * *** * * * *** * * consensus_4869#1 TCTA-GAACT--TGATTTCCTAGGTACGTCCCTAAAGAGAAACACAATCAATCA-CATCA 163 consensus_4869#2 TCTA-GAACT--TGATTTCCTAGGTACGTCCCTAAAGAGAAACACAATCAATCA-CATCA 175 consensus_4869#0 CCTGTGAATTGTTGATTTCCTCGTCATGTACA-AAAGAGATTATCCATCCGTCATCCTCA 298 ** *** * ********* * * ** * ******* * *** *** * *** consensus_4869#1 TTTGTAGTATCTTATATATCATATCAAATTACATG-AAGATATATATATTTTTGT---AG 219 consensus_4869#2 TTTGTAGTATCTTATATATCATATCAAATTACATG-AAGATATATATATTTTTGT---AG 231 consensus_4869#0 TTTGCTCCATTGACCTTCGGAACAAAAGTTGCTCCTGAGCAAAATTTGTTTCTACCAAGA 358 **** ** * * ** ** * ** * ** * *** * consensus_4869#1 TAACACAACACGATGTTTGCAGTAATGT-ACACCCCTCC-AGGAGTCATCTCTTCTTATA 277 consensus_4869#2 TAACACAACACGATGTTTGCAGTAATGT-ACACCCCTTG-TCTCGTCCTCT--------- 280 consensus_4869#0 TGATGGGACTCTACATTTATTAGATCTTGACAGGGCTTAATTTTGTCTTCAAGATATAGT 418 * * ** * * *** * * *** ** *** ** consensus_4869#1 CGTGCTTCTTGAGATGAATGCTCCATGAAAACCATAGGGTACTCTGTGTTTCAATACTAT 337 consensus_4869#2 ------------------------------------------------------------ consensus_4869#0 TTTGCAAAACCTCCAAATTTTGGTCGCACTATTCCACAACCACCTGCCAAGCTCCCTTGG 478 consensus_4869#1 CTTAGCAACTGGTCCATTCTCAAATCTTTGTGCATCGATGATATGTGCCTGTGAATTGTT 397 consensus_4869#2 ------------------------------------------------------------ consensus_4869#0 AAATCCACCACTTGTGCATATGCATACTTGTGATTCAAGCCAACATATTTGTCATTGATG 538 consensus_4869#1 GATTTCCTCGTCATGTACAAAAGAGATTATCCATCCGTCATCCTCATTTGCTCCATTGAC 457 consensus_4869#2 ------------------------------------------------------------ consensus_4869#0 ACTGGGAATTCCATATCAATACCTGCTCCAGTTAAGTATTTTTCTATAACAGACATGCTT 598 consensus_4869#1 CTTCGGAACAAAAGTTGCTCCTGAGCAAAATTTGTTTCTACCAAGATGATGGTACTCTAC 517 consensus_4869#2 ------------------------------------------------------------ consensus_4869#0 TTCATGTTTAACCTCCACTCGTACAAGCGAGAAAAATATTCCTCATTGAGTCCTTGGTTA 658 consensus_4869#1 ATTTATTAGATCTTGACAGGGCTTAATTTTGTCTTCAAGATATAGTTTTGCAAAACCTCC 577 consensus_4869#2 ------------------------------------------------------------ consensus_4869#0 GCTGGTTCTTCATCAACAGAGTGCTCAAGTACTGTAGGACCCATAAGAATGGAACCTGGC 718 consensus_4869#1 AAATTTTGGTCGCACTATTCCACAACCACCTGCCAAGCTCCCTTGGAAATCCACCACTTG 637 consensus_4869#2 ------------------------------------------------------------ consensus_4869#0 ACTCGAAATCCCCTTATAACAACCTCATTATGTTCCTCAAAGCAGTTGACAAGATGGATA 778 consensus_4869#1 TGCATATGCATACTTGTGATTCAAGCCAACATATTTGTCATTGATGACTGGGAATTCCAT 697 consensus_4869#2 ------------------------------------------------------------ consensus_4869#0 GTGCAGAATGGTTCTACGTCAAACCAAATTACTG-------------------------- 812 consensus_4869#1 ATCAATACCTGCTCCAGTTAAGTATTTTTCTATAACAGACAT 739 consensus_4869#2 ------------------------------------------ consensus_4869#0 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||