These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4872#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [AAGCTACAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACAGAAGATAAGGAGCAGATGCACGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGCAAGCGCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCCCCTGACAGCTGATTCCTTGTCGACAGATCAATGATGGTCTTACAGNTTGTTATGGCGTAAAGCCGAGNTTTGGTTCTATTATTGATACACTGTACTGCCTGGATCATNCATACNATCCGTGGAACTGATGTGAATTTTGCATTTGATTTGCTTTGGGAGCAACAGCNCGATCTGATCNCAAACNGATCTTGGCCAACACGGCTTGCTATCAATGACAAATCATTATTTTCATGN] [+] EMBL CB096534 [AAGCTACAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACAGAAGATAAGGAGCAGATGCACGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGCAAGCGCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCCCCTGACAGCTGATTCCTTGTCGACAGATCAATGATGGTCTTACAGNTTGTTATGGCGTAAAGCCGAGNTTTGGTTCTATTATTGATACACTGTACTGCCTGGATCATNCATACNATCCGTGGAACTGATGTGAATTTTGCATTTGATTTGCTTTGGGAGCAACAGCNCGATCTGATCNCAAACNGATCTTGGCCAACACGGCTTGCTATCAATGACAAATCATTATTTTCATGN] consensusID : consensus_4872#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 392 fasta sequence [CTGAAGTTAAAGAAGCTNCAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACNGAAGATAAGGAGCAGATGCNCGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGCAAGCNCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCCCCTGACAGCTGATTCCTTGTCGACAGATCAATGATGGNCTTACAGTTTGTTATGGCGTAAAGCCGAGTTTTGGTTCTATTATTTATA-CACTGTACTGCCTGGATCATCCATNCGATCCGTGGAACTGATGTGAATTTTGCATTTGATTGTTTTGGGAGCAACAGCCGATCTGATCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU175054 [CTGAAGTTAAAGAAGCTNCAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACNGAAGATAAGGAGCAGATGCNCGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGCAAGCNCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCCCCTGACAGCTGATTCCTTGTCGACAGATCAATGATGGNCTTACAGTTTGTTATGGCGTAAAGCCGAGTTTTGGTTCTATTATTTATA CACTGTACTGCCTGGATCATCCATNCGATCCGTGGAACTGATGTGAATTTTGCATTTGATTGTTTTGGGAGCAACAGCCGATCTGATCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF330992 [ GCAGATGCACGCTATCTTGACGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGCAAGCGCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCCCCTGACAGCTGGTTCCTTGTCGACAGATCAATGATGGTCTTACAGTTTGTTATGGCGTAAAGCCGAGTTTTGGTTCTATTATTTATATCACTGTACTGCCTGGATCATCCATACGATCCGTGGAACTGATGTGAATTTTGCATTTGATTGTTTTGGGAGCAACAGCCGATCTGATCGCAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4872#0 ------------AAGCTACAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACA 48 consensus_4872#1 CTGAAGTTAAAGAAGCTNCAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACN 60 ***** ***************************************** consensus_4872#0 GAAGATAAGGAGCAGATGCACGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTT 108 consensus_4872#1 GAAGATAAGGAGCAGATGCNCGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTT 120 ******************* **************************************** consensus_4872#0 TCTGTTGATGGCAAGCGCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCC 168 consensus_4872#1 TCTGTTGATGGCAAGCNCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCC 180 **************** ******************************************* consensus_4872#0 CCTGACAGCTGATTCCTTGTCGACAGATCAATGATGGTCTTACAGNTTGTTATGGCGTAA 228 consensus_4872#1 CCTGACAGCTGATTCCTTGTCGACAGATCAATGATGGNCTTACAGTTTGTTATGGCGTAA 240 ************************************* ******* ************** consensus_4872#0 AGCCGAGNTTTGGTTCTATTATTGATACACTGTACTGCCTGGATCATNCATACNATCCGT 288 consensus_4872#1 AGCCGAGTTTTGGTTCTATTATTTATACACTGTACTGCCTGGATCATCCATNCGATCCGT 300 ******* *************** *********************** *** * ****** consensus_4872#0 GGAACTGATGTGAATTTTGCATTTGATTTGCTTTGGGAGCAACAGCNCGATCTGATCNCA 348 consensus_4872#1 GGAACTGATGTGAATTTTGCATTTGATT-GTTTTGGGAGCAACAGCC-GATCTGATCGCA 358 **************************** * *************** ********* ** consensus_4872#0 AACNGATCTTGGCCAACACGGCTTGCTATCAATGACAAATCATTATTTTCATGN 402 consensus_4872#1 AAAAAA-----AAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------- 392 ** * ** * * ** * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||