These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1474 fasta sequence [TGCGGTTCGCGTCGGGAGGAGGGTTCAAGGTGGCGCTCTTCGCCGACCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCACGGCAGGACGCCGGCTCCGACCGCGTCATGGCCGCCGTCCTCGACGCCGAGAAGCCCGACTTCGTGGTGTACCTCGGCGACCTCGTGACCGCGAACAATCTAGGGATCCCCAACGCGAGCCTGTACTGGGACAGAGCGATTTCTCCGACCAGAGGCAGGGGGATCCCGTGGGCGACGGTGTTCGGGAACCACGACGACATGCCGTTCGAGTGGCCTCCTGAGTGGTTCTCTCCTGCAGGCGTTCCGCCGCTGCATTGCCCACCACCGAGCATGTCAGATTCAGGTAAACTTAAGATAGTTCATTTCTGAATTTGTTTCAGTTCAGTCACTGAACTTCAGCGCAGAAAAAAGAAAAGGAAAAGAAAGAAGGCAACCACTGTATGCTTTCAAACAAAAGTAATCATTCATTTGAACTTTTCAAGAAAACCATGTTTTTAACTTGATGTGCAGACTGCAGCTTCCGAGGAACACCGCGACTTGAACTGATGACAAGTGAGGTTATCCGTAATGGATTGTCATATTCATCAAATGGCCCCAAGGACCTCTGGCCTGCTGTTTCCAACTACGTCTTGCAGGTGCTATCACAGAAGCGAGATGATCCAGCTCTGCTCATGTATTTCCTTGACTCCGGTGGTGGATCCTATCCAGAAGTGATATCCAGTGCTCAGGTTCAGTGGTTTCATAGTCAATCTCAGTTCCTTAATCCAAATGGAAGGATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTATCAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGGTTTGTTTCATCTGAACATTTCTTGACATGTATACAGAATTTCTTATCCCCTGAATCCCTTCAGATAACTTAGATACACAGGTCAAAATTCAGAAGACACTTACTTTTTATTTGTTAGAGAACATATATCATTGGTTGTCATTTTACAGGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCTATGTTTTGTCCGACACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCTGAACAGCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGATATTAGCTTGAGCTCCTAGACTTGTAAATGAAATGTAGTTGCTGGAGTTTTATTTCAGACAAATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAATTAAGCTGAGCCCCCTTGTAAAATTGTAATATATGCGTACAGAGTAAGA] [+] EMBL AK102443 [TGCGGTTCGCGTCGGGAGGAGGGTTCAAGGTGGCGCTCTTCGCCGACCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCACGGCAGGACGCCGGCTCCGACCGCGTCATGGCCGCCGTCCTCGACGCCGAGAAGCCCGACTTCGTGGTGTACCTCGGCGACCTCGTGACCGCGAACAATCTAGGGATCCCCAACGCGAGCCTGTACTGGGACAGAGCGATTTCTCCGACCAGAGGCAGGGGGATCCCGTGGGCGACGGTGTTCGGGAACCACGACGACATGCCGTTCGAGTGGCCTCCTGAGTGGTTCTCTCCTGCAGGCGTTCCGCCGCTGCATTGCCCACCACCGAGCATGTCAGATTCAGGTAAACTTAAGATAGTTCATTTCTGAATTTGTTTCAGTTCAGTCACTGAACTTCAGCGCAGAAAAAAGAAAAGGAAAAGAAAGAAGGCAACCACTGTATGCTTTCAAACAAAAGTAATCATTCATTTGAACTTTTCAAGAAAACCATGTTTTTAACTTGATGTGCAGACTGCAGCTTCCGAGGAACACCGCGACTTGAACTGATGACAAGTGAGGTTATCCGTAATGGATTGTCATATTCATCAAATGGCCCCAAGGACCTCTGGCCTGCTGTTTCCAACTACGTCTTGCAGGTGCTATCACAGAAGCGAGATGATCCAGCTCTGCTCATGTATTTCCTTGACTCCGGTGGTGGATCCTATCCAGAAGTGATATCCAGTGCTCAGGTTCAGTGGTTTCATAGTCAATCTCAGTTCCTTAATCCAAATGGAAGGATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTATCAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGGTTTGTTTCATCTGAACATTTCTTGACATGTATACAGAATTTCTTATCCCCTGAATCCCTTCAGATAACTTAGATACACAGGTCAAAATTCAGAAGACACTTACTTTTTATTTGTTAGAGAACATATATCATTGGTTGTCATTTTACAGGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCTATGTTTTGTCCGACACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCTGAACAGCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGATATTAGCTTGAGCTCCTAGACTTGTAAATGAAATGTAGTTGCTGGAGTTTTATTTCAGACAAATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAATTAAGCTGAGCCCCCTTGTAAAATTGTAATATATGCGTACAGAGTAAGA] consensusID : consensus_4883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1273 fasta sequence [TGCGGTTCGCGTCGGGAGGAGGGTTCAAGGTGGCGCTCTTCGCCGACCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCACGGCAGGACGCCGGCTCCGACCGCGTCATGGCCGCCGTCCTCGACGCCGAGAAGCCCGACTTCGTGGTGTACCTCGGCGACCTCGTGACCGCGAACAATCTAGGGATCCCCAACGCGAGCCTGTACTGGGACAGAGCGATTTCTCCGACCAGAGGCAGGGGGATCCCGTGGGCGACGGTGTTCGGGAACCACGACGACATGCCGTTCGAGTGGCCTCCTGAGTGGTTCTCTCCTGCAGGCGTTCCGCCGCTGCATTGCCCACCACCGAGCATGTCAGATTCAGACTGCAGCTTCCGAGGAACACCGCGACTTGAACTGATGACAAGTGAGGTTATCCGTAATGGATTGTCATATTCATCAAATGGCCCCAAGGACCTCTGGCCTGCTGTTTCCAACTACGTCTTGCAGGTGCTATCACAGAAGCGAGATGATCCAGCTCTGCTCATGTATTTCCTTGACTCCGGTGGTGGATCCTATCCAGAAGTGATATCCAGTGCTCAGGTTCAGTGGTTTCATAGTCAATCTCAGTTCCTTAATCCAAATGGAAGGATTCCAGAGATCATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTATCAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCTATGTTTTGCCCGACACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCTGAACA-GCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGATATTAGCTTGAGCTCCTAGACTTGTAAATGAAATGTAGTTGCTGGAGTTTTATTTCAGACAAATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAATTAAGCTGAGCCCCC-TTGTAAAATTGTAATATATGCGTACAGAGTAAGAAAAGGTTGGCAGAAAGAAAGAGAAAAGAGTAGGAAAAATGATGAACCTATGGGATCCACTGCCACGTGTCAAGCTACGTGGTGCCATGTCAGATGAAATCACCAGAAAAAAAAGT] [+] EMBL AK107393 [TGCGGTTCGCGTCGGGAGGAGGGTTCAAGGTGGCGCTCTTCGCCGACCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCACGGCAGGACGCCGGCTCCGACCGCGTCATGGCCGCCGTCCTCGACGCCGAGAAGCCCGACTTCGTGGTGTACCTCGGCGACCTCGTGACCGCGAACAATCTAGGGATCCCCAACGCGAGCCTGTACTGGGACAGAGCGATTTCTCCGACCAGAGGCAGGGGGATCCCGTGGGCGACGGTGTTCGGGAACCACGACGACATGCCGTTCGAGTGGCCTCCTGAGTGGTTCTCTCCTGCAGGCGTTCCGCCGCTGCATTGCCCACCACCGAGCATGTCAGATTCAGACTGCAGCTTCCGAGGAACACCGCGACTTGAACTGATGACAAGTGAGGTTATCCGTAATGGATTGTCATATTCATCAAATGGCCCCAAGGACCTCTGGCCTGCTGTTTCCAACTACGTCTTGCAGGTGCTATCACAGAAGCGAGATGATCCAGCTCTGCTCATGTATTTCCTTGACTCCGGTGGTGGATCCTATCCAGAAGTGATATCCAGTGCTCAGGTTCAGTGGTTTCATAGTCAATCTCAGTTCCTTAATCCAAATGGAAGGATTCCAGAGATCATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTATCAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCTATGTTTTGCCCGACACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCTGAACA GCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGATATTAGCTTGAGCTCCTAGACTTGTAAATGAAATGTAGTTGCTGGAGTTTTATTTCAGACAAATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAATTAAGCTGAGCCCCC TTGTAAAATTGTAATATATGCGTACAGAGTAAGAAAAGGTTGGCAGAAAGAAAGAGAAAAGAGTAGGAAAAATGATGAACCTATGGGATCCACTGCCACGTGTCAAGCTACGTGGTGCCATGTCAGATGAAATCACCAGAAAAAAAAGT] [+] EMBL BI799780 [ TGGAAGGATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTATCAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCTATGTTTTGCCCGACACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCTGAACACGCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGATATTAGCTTGAGCTCCTAGACTTGTAAATGAAATGTAGTTGCTGGAGTTTTATTTCAGACAAATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAATTAAGCTGAGCCCCCTTTGTAAAATTGTAAaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4883#0 TGCGGTTCGCGTCGGGAGGAGGGTTCAAGGTGGCGCTCTTCGCCGACCTGCATTACGGCG 60 consensus_4883#1 TGCGGTTCGCGTCGGGAGGAGGGTTCAAGGTGGCGCTCTTCGCCGACCTGCATTACGGCG 60 ************************************************************ consensus_4883#0 AGAACGCCTGGACGGACTGGGGCCCACGGCAGGACGCCGGCTCCGACCGCGTCATGGCCG 120 consensus_4883#1 AGAACGCCTGGACGGACTGGGGCCCACGGCAGGACGCCGGCTCCGACCGCGTCATGGCCG 120 ************************************************************ consensus_4883#0 CCGTCCTCGACGCCGAGAAGCCCGACTTCGTGGTGTACCTCGGCGACCTCGTGACCGCGA 180 consensus_4883#1 CCGTCCTCGACGCCGAGAAGCCCGACTTCGTGGTGTACCTCGGCGACCTCGTGACCGCGA 180 ************************************************************ consensus_4883#0 ACAATCTAGGGATCCCCAACGCGAGCCTGTACTGGGACAGAGCGATTTCTCCGACCAGAG 240 consensus_4883#1 ACAATCTAGGGATCCCCAACGCGAGCCTGTACTGGGACAGAGCGATTTCTCCGACCAGAG 240 ************************************************************ consensus_4883#0 GCAGGGGGATCCCGTGGGCGACGGTGTTCGGGAACCACGACGACATGCCGTTCGAGTGGC 300 consensus_4883#1 GCAGGGGGATCCCGTGGGCGACGGTGTTCGGGAACCACGACGACATGCCGTTCGAGTGGC 300 ************************************************************ consensus_4883#0 CTCCTGAGTGGTTCTCTCCTGCAGGCGTTCCGCCGCTGCATTGCCCACCACCGAGCATGT 360 consensus_4883#1 CTCCTGAGTGGTTCTCTCCTGCAGGCGTTCCGCCGCTGCATTGCCCACCACCGAGCATGT 360 ************************************************************ consensus_4883#0 CAGATTCAGGTAAACTTAAGATAGTTCATTTCTGAATTTGTTTCAGTTCAGTCACTGAAC 420 consensus_4883#1 CAGATTCAG--------------------------------------------------- 369 ********* consensus_4883#0 TTCAGCGCAGAAAAAAGAAAAGGAAAAGAAAGAAGGCAACCACTGTATGCTTTCAAACAA 480 consensus_4883#1 ------------------------------------------------------------ consensus_4883#0 AAGTAATCATTCATTTGAACTTTTCAAGAAAACCATGTTTTTAACTTGATGTGCAGACTG 540 consensus_4883#1 --------------------------------------------------------ACTG 373 **** consensus_4883#0 CAGCTTCCGAGGAACACCGCGACTTGAACTGATGACAAGTGAGGTTATCCGTAATGGATT 600 consensus_4883#1 CAGCTTCCGAGGAACACCGCGACTTGAACTGATGACAAGTGAGGTTATCCGTAATGGATT 433 ************************************************************ consensus_4883#0 GTCATATTCATCAAATGGCCCCAAGGACCTCTGGCCTGCTGTTTCCAACTACGTCTTGCA 660 consensus_4883#1 GTCATATTCATCAAATGGCCCCAAGGACCTCTGGCCTGCTGTTTCCAACTACGTCTTGCA 493 ************************************************************ consensus_4883#0 GGTGCTATCACAGAAGCGAGATGATCCAGCTCTGCTCATGTATTTCCTTGACTCCGGTGG 720 consensus_4883#1 GGTGCTATCACAGAAGCGAGATGATCCAGCTCTGCTCATGTATTTCCTTGACTCCGGTGG 553 ************************************************************ consensus_4883#0 TGGATCCTATCCAGAAGTGATATCCAGTGCTCAGGTTCAGTGGTTTCATAGTCAATCTCA 780 consensus_4883#1 TGGATCCTATCCAGAAGTGATATCCAGTGCTCAGGTTCAGTGGTTTCATAGTCAATCTCA 613 ************************************************************ consensus_4883#0 GTTCCTTAATCCAAATGGAAGGATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGC 840 consensus_4883#1 GTTCCTTAATCCAAATGGAAGGATTCCAGAGATCATCTTTTGGCATATTCCAAGTACGGC 673 ********************************* ************************** consensus_4883#0 ATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTAT 900 consensus_4883#1 ATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTAT 733 ************************************************************ consensus_4883#0 CAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAA 960 consensus_4883#1 CAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAA 793 ************************************************************ consensus_4883#0 GAGGGCTTCAGTGAAGGTTTGTTTCATCTGAACATTTCTTGACATGTATACAGAATTTCT 1020 consensus_4883#1 GAGGGCTTCAGTGAAGG------------------------------------------- 810 ***************** consensus_4883#0 TATCCCCTGAATCCCTTCAGATAACTTAGATACACAGGTCAAAATTCAGAAGACACTTAC 1080 consensus_4883#1 ------------------------------------------------------------ consensus_4883#0 TTTTTATTTGTTAGAGAACATATATCATTGGTTGTCATTTTACAGGCAATTTTCGTTGGT 1140 consensus_4883#1 ----------------------------------------------CAATTTTCGTTGGT 824 ************** consensus_4883#0 CACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCTATGTTTTGTCCGA 1200 consensus_4883#1 CACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCTATGTTTTGCCCGA 884 ******************************************************* **** consensus_4883#0 CACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCT 1260 consensus_4883#1 CACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCT 944 ************************************************************ consensus_4883#0 GAACAGCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGAT 1320 consensus_4883#1 GAACAGCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGAT 1004 ************************************************************ consensus_4883#0 ATTAGCTTGAGCTCCTAGACTTGTAAATGAAATGTAGTTGCTGGAGTTTTATTTCAGACA 1380 consensus_4883#1 ATTAGCTTGAGCTCCTAGACTTGTAAATGAAATGTAGTTGCTGGAGTTTTATTTCAGACA 1064 ************************************************************ consensus_4883#0 AATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAATTAAGCTGAGCCCCC 1440 consensus_4883#1 AATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAATTAAGCTGAGCCCCC 1124 ************************************************************ consensus_4883#0 TTGTAAAATTGTAATATATGCGTACAGAGTAAGA-------------------------- 1474 consensus_4883#1 TTGTAAAATTGTAATATATGCGTACAGAGTAAGAAAAGGTTGGCAGAAAGAAAGAGAAAA 1184 ********************************** consensus_4883#0 ------------------------------------------------------------ consensus_4883#1 GAGTAGGAAAAATGATGAACCTATGGGATCCACTGCCACGTGTCAAGCTACGTGGTGCCA 1244 consensus_4883#0 ----------------------------- consensus_4883#1 TGTCAGATGAAATCACCAGAAAAAAAAGT 1273 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||