These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4899#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [TGGTTGAGGATGTTATCAGCGAAGCAATTCTGTCTGGTCCAGTTCAAGTCCTGGTGACACCATAATGGTGGACACTGATGCCCACGGGGAAACCTTGCTTGAGCCCGACTGAATGATCAGACCGTCCAATTATCCGATCCGACACCAACACTTTGAAGGTTCAAACNCCCTATGTATATTCGTGATTTACTCATTTATTCTTCCACACCGATAAGCAAGCTTCTTGTGCATGCATAGGTTCCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATTTGAATCTAACATCAACTGTACATATCATTGAATTTCAAAAGGTNCTTGAACNNTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU056952 [TGGTTGAGGATGTTATCAGCGAAGCAATTCTGTCTGGTCCAGTTCAAGTCCTGGTGACACCATAATGGTGGACACTGATGCCCACGGGGAAACCTTGCTTGAGCCCGACTGAATGATCAGACCGTCCAATTATCCGATCCGACACCAACACTTTGAAGGTTCAAACNCCCTATGTATATTCGTGATTTACTCATTTATTCTTCCACACCGATAAGCAAGCTTCTTGTGCATGCATAGGTTCCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATTTGAATCTAACATCAACTGTACATATCATTGAATTTCAAAAGGTNCTTGAACNNTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_4899#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 358 fasta sequence [ATTCTGTCTGGTCAGTTCAAGCCTGGTGACACCATAATGGTGGACACTGAT-GCC-ACGGGG--AAA-CCTTGCTTGAGCCGACTGAATGATCAGACCGTCCAATTATCCGATCCGACACCAACACTTTGAAGGTTCAAACACCCTATGT-ATATTCGTGATTTACTCAT-TTATTCTTCCACAC-CGATAAGCAAGCTTCTTGTGCATGCATAGGTTCCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATTTGAATCTAACATCAACTGTACATATCATTGAATTTCAAAAGGTACTTGAACCATTTACATGATTAGATGGTCCATACGCATCCAAAAA] [+] EMBL AK061666 [ATTCTGTCTGGTCAGTTCAAGCCTGGTGACACCATAATGGTGGACACTGAT GCC ACGGGG AAA CCTTGCTTGAGCCGACTGAATGATCAGACCGTCCAATTATCCGATCCGACACCAACACTTTGAAGGTTCAAACACCCTATGT ATATTCGTGATTTACTCAT TTATTCTTCCACAC CGATAAGCAAGCTTCTTGTGCATGCATAGGTTCCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATTTGAATCTAACATCAACTGTACATATCATTGAATTTCAAAAGGTACTTGAACCATTTACATGATTAGATGGTCC ] [+] EMBL BI807814 [ tgAATGATGGACACTGATGGCCAACGGGGGAAAACCCTTGCTTGAGCCGACTGAATGATCAGACCGTCCAATGAGCCGATCCGACACCTACACTTTGAAGGTTCAAATACCCTATGTGATATTCGTGAGTTACTCATGTTATTCTTCCACACACGATAAGCAAGCTTCTTGTGCATGCATAGGTTCCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATTTGAATCTAACATC ACTGTACATATCATTGAATTTCAAAAGGTACTTGAACCATTTACATGATTAGATGGTCCATACGCATCCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4899#0 TGGTTGAGGATGTTATCAGCGAAGCAATTCTGTCTGGTCCAGTTCAAGTCCTGGTGACAC 60 consensus_4899#1 --------------------------ATTCTGTCTGGTC-AGTTCAAG-CCTGGTGACAC 32 ************* ******** *********** consensus_4899#0 CATAATGGTGGACACTGATGCCCACGGGGAAACCTTGCTTGAGCCCGACTGAATGATCAG 120 consensus_4899#1 CATAATGGTGGACACTGATGCC-ACGGGGAAACCTTGCTTGAGCC-GACTGAATGATCAG 90 ********************** ********************** ************** consensus_4899#0 ACCGTCCAATTATCCGATCCGACACCAACACTTTGAAGGTTCAAACNCCCTATGTATATT 180 consensus_4899#1 ACCGTCCAATTATCCGATCCGACACCAACACTTTGAAGGTTCAAACACCCTATGTATATT 150 ********************************************** ************* consensus_4899#0 CGTGATTTACTCATTTATTCTTCCACACCGATAAGCAAGCTTCTTGTGCATGCATAGGTT 240 consensus_4899#1 CGTGATTTACTCATTTATTCTTCCACACCGATAAGCAAGCTTCTTGTGCATGCATAGGTT 210 ************************************************************ consensus_4899#0 CCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATT 300 consensus_4899#1 CCATAGTTCATGTACATAGCCTCCACATGCTGGAATTTCTCCATGCATATAATGTAAATT 270 ************************************************************ consensus_4899#0 TGAATCTAACATCAACTGTACATATCATTGAATTTCAAAAGGTNCTTGAACNNTTTAAAA 360 consensus_4899#1 TGAATCTAACATCAACTGTACATATCATTGAATTTCAAAAGGTACTTGAACCATTTACAT 330 ******************************************* ******* **** * consensus_4899#0 AAAAAAAAAAAAAAAAAA-----AAAAA 383 consensus_4899#1 GATTAGATGGTCCATACGCATCCAAAAA 358 * * * * * ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||