These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1578 fasta sequence [GGCCATGTCATTTGGATCCAGATATCCTGTCGACGGAGCATCTATTGCCCCAGCTGCCAAAGTGGAAAAATCGTTGGGTAAATGGATACAACCACAGGAATGAACCTTGTCGGCGTGCAATCCAGGTGTATGATTTGGATGTATCGTCCCCCCATGATGAACCAATGGAGATCTACGGTATATTTGCATTTAGAGATGTACGAAACAACCAACAACGTAATCATGTCTTTCAATACTCGAGGGACAAACCATATAAGCTTCGGCCGGTGAGAGATTTCATGACTAAGTTTGTTTTGTTTATACCTTTTGTCTTAAAAGGGTCCCCTCCTTTTCTGTAGTTGTGCTCTTTAAACTTTGACATAAATCTATCTCCTTTTTGAAATAACTGACATTGGGAATTATTCATTTTTTAACTTTGTCCACTTGTCGCAAAAAGAAAAAAAAAAGTACACCATATTTTCGTAGTGTATGGCATCTTAAATATATACAAACGTGAAGCTCTCATTCATCAAACTCTAATCATTTAAGAGTAATTTGCGGTCAGAGTCAAAATAGTAATAGACACCAACAGTTATATTCATAAATGGAGGGATTAGTGGTTAAAACACCAATATATTATCTCTGGGACAAGTGTTTTATGTACCAGATGATTAGGCACTAGAATTAATACTTCATTTTATTCTTGTAACATTTGATGCACGTATGTCTAATAACTTTGATGTTTCTTTCACAAATTACTGCACAGGGCTCTAATAAGATACGGCCTCTAATTTGGCCACCTAGAGGCATATATGCAGTTGGGCCTATGTTGATCGAATACTACCTTGTCATTAAGGGTCAAGAAAGGAAAGACGATAAAGTGTTGATAGACGGGCATTCTATGTATGCCCCATCGTTCTATTCAGAACTTCATAGATACCGTTGGCACATCGACACTGGTCATTGTGGCACTGTTGCTCTGGAGATGGTTGCCCTTGATAAGGCAGTACTGGGCACATTGGAGCTTGAGGTACTCGATCTCGGAGAGAACTGTTTTGATTCACTTACAGTTGTTGCAGGTTACTGCGTACAGTGGGGACAATTCATGATATTTGACGGCAAGTTGA-GCGTTGGCAAGTTGCCCCCGGTCACATTATGCGTGGACGGTGATGGAATTCTGTTGCTTCGCTTCTTCACGTATAACAGCCCTTCAAATGATAAGAGCTTTAGTCATGGTGGTGGTG-TTAATGATCTCCTTGAGCATGTCA-CTGAGGAT-GTGTTGTTTGGGAGTATGTCGTTTGTACCACAGAACGAGGGGAGTTCTACTGCAAGTGGAGGCTGTTCTAGTTGTATGGACGGTCTTGAGATTTCGGCCACTGCCAAGTGGTCGCCATTATTTGAACAATCAGATTAGCTATGC-TTCCCCTTTCAAAAAGGAAGAAGATTAGCTATGCTTCGTATTATACACAAATGGT-TTGATCATCTCTGTATTTAGTAATGAAGGCCTAAAAGGACAAGAATGACCAA-GTTTGTAACAGACGATAATAGTGTATCTCTCCGCAATATGTATATTAATGTGGTGTTTTCTTTCAAAAAAAA] [+] EMBL AK073997 [GGCCATGTCATTTGGATCCAGATATCCTGTCGACGGAGCATCTATTGCCCCAGCTGCCAAAGTGGAAAAATCGTTGGGTAAATGGATACAACCACAGGAATGAACCTTGTCGGCGTGCAATCCAGGTGTATGATTTGGATGTATCGTCCCCCCATGATGAACCAATGGAGATCTACGGTATATTTGCATTTAGAGATGTACGAAACAACCAACAACGTAATCATGTCTTTCAATACTCGAGGGACAAACCATATAAGCTTCGGCCGGTGAGAGATTTCATGACTAAGTTTGTTTTGTTTATACCTTTTGTCTTAAAAGGGTCCCCTCCTTTTCTGTAGTTGTGCTCTTTAAACTTTGACATAAATCTATCTCCTTTTTGAAATAACTGACATTGGGAATTATTCATTTTTTAACTTTGTCCACTTGTCGCAAAAAGAAAAAAAAAAGTACACCATATTTTCGTAGTGTATGGCATCTTAAATATATACAAACGTGAAGCTCTCATTCATCAAACTCTAATCATTTAAGAGTAATTTGCGGTCAGAGTCAAAATAGTAATAGACACCAACAGTTATATTCATAAATGGAGGGATTAGTGGTTAAAACACCAATATATTATCTCTGGGACAAGTGTTTTATGTACCAGATGATTAGGCACTAGAATTAATACTTCATTTTATTCTTGTAACATTTGATGCACGTATGTCTAATAACTTTGATGTTTCTTTCACAAATTACTGCACAGGGCTCTAATAAGATACGGCCTCTAATTTGGCCACCTAGAGGCATATATGCAGTTGGGCCTATGTTGATCGAATACTACCTTGTCATTAAGGGTCAAGAAAGGAAAGACGATAAAGTGTTGATAGACGGGCATTCTATGTATGCCCCATCGTTCTATTCAGAACTTCATAGATACCGTTGGCACATCGACACTGGTCATTGTGGCACTGTTGCTCTGGAGATGGTTGCCCTTGATAAGGCAGTACTGGGCACATTGGAGCTTGAGGTACTCGATCTCGGAGAGAACTGTTTTGATTCACTTACAGTTGTTGCAGGTTACTGCGTACAGTGGGGACAATTCATGATATTTGACGGCAAGTTGA GCGTTGGCAAGTTGCCCCCGGTCACATTATGCGTGGACGGTGATGGAATTCTGTTGCTTCGCTTCTTCACGTATAACAGCCCTTCAAATGATAAGAGCTTTAGTCATGGTGGTGGTG TTAATGATCTCCTTGAGCATGTCA CTGAGGAT GTGTTGTTTGGGAGTATGTCGTTTGTACCACAGAACGAGGGGAGTTCTACTGCAAGTGGAGGCTGTTCTAGTTGTATGGACGGTCTTGAGATTTCGGCCACTGCCAAGTGGTCGCCATTATTTGAACAATCAGATTAGCTATGC TTCCCCTTTCAAAAAGGAAGAAGATTAGCTATGCTTCGTATTATACACAAATGGT TTGATCATCTCTGTATTTAGTAATGAAGGCCTAAAAGGACAAGAATGACCAA GTTTGTAACAGACGATAATAGTGTATCTCTCCGCAATATGTATATTAATGTGGTGTTTTCTTT ] [+] EMBL BI806856 [ acATTCATGATATTTGACGGCAAGTTGACGCGTTGGCAAGTTGCCCCCGGTCACATTATGCGTGGACGGTGATGGAATTCTGTTGCTTCGCTTCTTCACGTATAACAGCCCTTCAAATGATAAGAGCTTTAGTCATGGTGGTGGTGTTTAATGATCTCCTTGAGCATGTCATCTGAGGATCGTGTTGTTTGGGAGTATGTCGTTTGTACCACAGAACGAGGGGAGTTCTACTGCAAGTGGAGGCTGTTCTAGTTGTATGGACGGTCTTGAGATTTCGGCCNCTNCCAAGTGGTCGCCATTATTTGAACAATCAGATTAGCTATGCATTCCCCTTTCAAAAAGGAAGAAGATTAGCTATGCTTCGTATTATACACAAATGGTCTTGATCATCTCTGTATTTAGTAATGAAGGCCTAAAAGGACAAGAATGACCAACGTTTGTAACAGACGATAATAGTGTATCTCTCCGC ATATGTATATTAATGTGGTGTTTTCTTNCAAAAAAAA] consensusID : consensus_4918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [GGCCATGTCATTTGGATCCAGATATCCTGTCGACGGAGCATCTATTGCCCCAGCTGCCAAAGTGGAAAAATCGTTGGGTAAATGGATACAACCACAGGAATGAACCTTGTCGGCGTGCAATCCAGGTGTATGATTTGAATGTATCGTCCCCCCATGATGAACCAATGGAGATCTACGGTATATTTGCATTTAGAGATGTACGAAACAACCAACAACGTAATCATGTCTTTCAATACTCCGAGGGGACAAACCATATAAGCTTCGGCCGGGGCTCTAATAAGATACGGCCTCTAATTTGGGCCACCTAGAGGCATATATGCAGTTGGGCCTATGTTGATCCGATACTAC] [+] EMBL C72962 [GGCCATGTCATTTGGATCCAGATATCCTGTCGACGGAGCATCTATTGCCCCAGCTGCCAAAGTGGAAAAATCGTTGGGTAAATGGATACAACCACAGGAATGAACCTTGTCGGCGTGCAATCCAGGTGTATGATTTGAATGTATCGTCCCCCCATGATGAACCAATGGAGATCTACGGTATATTTGCATTTAGAGATGTACGAAACAACCAACAACGTAATCATGTCTTTCAATACTCCGAGGGGACAAACCATATAAGCTTCGGCCGGGGCTCTAATAAGATACGGCCTCTAATTTGGGCCACCTAGAGGCATATATGCAGTTGGGCCTATGTTGATCCGATACTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4918#0 GGCCATGTCATTTGGATCCAGATATCCTGTCGACGGAGCATCTATTGCCCCAGCTGCCAA 60 consensus_4918#1 GGCCATGTCATTTGGATCCAGATATCCTGTCGACGGAGCATCTATTGCCCCAGCTGCCAA 60 ************************************************************ consensus_4918#0 AGTGGAAAAATCGTTGGGTAAATGGATACAACCACAGGAATGAACCTTGTCGGCGTGCAA 120 consensus_4918#1 AGTGGAAAAATCGTTGGGTAAATGGATACAACCACAGGAATGAACCTTGTCGGCGTGCAA 120 ************************************************************ consensus_4918#0 TCCAGGTGTATGATTTGGATGTATCGTCCCCCCATGATGAACCAATGGAGATCTACGGTA 180 consensus_4918#1 TCCAGGTGTATGATTTGAATGTATCGTCCCCCCATGATGAACCAATGGAGATCTACGGTA 180 ***************** ****************************************** consensus_4918#0 TATTTGCATTTAGAGATGTACGAAACAACCAACAACGTAATCATGTCTTTCAATACTC-- 238 consensus_4918#1 TATTTGCATTTAGAGATGTACGAAACAACCAACAACGTAATCATGTCTTTCAATACTCCG 240 ********************************************************** consensus_4918#0 GAGGGACAAACCATATAAGCTTCGGCCGGTGAGAGATTTCATGACTAAGTTTGTTTTGTT 298 consensus_4918#1 AGGGGACAAACCATATAAGCTTCGGCCG----GGGCTCTAATAAGATACGGCCTCTAATT 296 ************************** * * * * ** * * * * ** consensus_4918#0 TATACCTTTTGTCTTAAAAGGGTCCCCTCCTTTTCTGTAGTTGTGCTCTTTAAACTTTGA 358 consensus_4918#1 TGGGCCACCT------AGAGG--------CATATATGCAGTTGGGCCTATGTTGATCCGA 342 * ** * * *** * * * ** ***** ** * * ** consensus_4918#0 CATAAATCTATCTCCTTTTTGAAATAACTGACATTGGGAATTATTCATTTTTTAACTTTG 418 consensus_4918#1 TACTAC------------------------------------------------------ 348 * * consensus_4918#0 TCCACTTGTCGCAAAAAGAAAAAAAAAAGTACACCATATTTTCGTAGTGTATGGCATCTT 478 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 AAATATATACAAACGTGAAGCTCTCATTCATCAAACTCTAATCATTTAAGAGTAATTTGC 538 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 GGTCAGAGTCAAAATAGTAATAGACACCAACAGTTATATTCATAAATGGAGGGATTAGTG 598 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 GTTAAAACACCAATATATTATCTCTGGGACAAGTGTTTTATGTACCAGATGATTAGGCAC 658 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 TAGAATTAATACTTCATTTTATTCTTGTAACATTTGATGCACGTATGTCTAATAACTTTG 718 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 ATGTTTCTTTCACAAATTACTGCACAGGGCTCTAATAAGATACGGCCTCTAATTTGGCCA 778 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 CCTAGAGGCATATATGCAGTTGGGCCTATGTTGATCGAATACTACCTTGTCATTAAGGGT 838 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 CAAGAAAGGAAAGACGATAAAGTGTTGATAGACGGGCATTCTATGTATGCCCCATCGTTC 898 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 TATTCAGAACTTCATAGATACCGTTGGCACATCGACACTGGTCATTGTGGCACTGTTGCT 958 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 CTGGAGATGGTTGCCCTTGATAAGGCAGTACTGGGCACATTGGAGCTTGAGGTACTCGAT 1018 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 CTCGGAGAGAACTGTTTTGATTCACTTACAGTTGTTGCAGGTTACTGCGTACAGTGGGGA 1078 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 CAATTCATGATATTTGACGGCAAGTTGAGCGTTGGCAAGTTGCCCCCGGTCACATTATGC 1138 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 GTGGACGGTGATGGAATTCTGTTGCTTCGCTTCTTCACGTATAACAGCCCTTCAAATGAT 1198 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 AAGAGCTTTAGTCATGGTGGTGGTGTTAATGATCTCCTTGAGCATGTCACTGAGGATGTG 1258 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 TTGTTTGGGAGTATGTCGTTTGTACCACAGAACGAGGGGAGTTCTACTGCAAGTGGAGGC 1318 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 TGTTCTAGTTGTATGGACGGTCTTGAGATTTCGGCCACTGCCAAGTGGTCGCCATTATTT 1378 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 GAACAATCAGATTAGCTATGCTTCCCCTTTCAAAAAGGAAGAAGATTAGCTATGCTTCGT 1438 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 ATTATACACAAATGGTTTGATCATCTCTGTATTTAGTAATGAAGGCCTAAAAGGACAAGA 1498 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 ATGACCAAGTTTGTAACAGACGATAATAGTGTATCTCTCCGCAATATGTATATTAATGTG 1558 consensus_4918#1 ------------------------------------------------------------ consensus_4918#0 GTGTTTTCTTTCAAAAAAAA 1578 consensus_4918#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||