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Oryza sativa
cluster # 4929 cluster # 4929       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4929#0 length = 1328 sequences # 3  

consensusID : consensus_4929#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1328
fasta sequence
                              [TCTCAACACGCGCGCA-CGGGGCGGCATGG-CGGTCGTCAGCGGCGGGAAGCGCGCGCTCCTCGTCGGCGTGAGCTACAAGGGCGACACCAGCAGAGAGCTGACGGGCGCGGCCGAAGACGTCAAGAACATGAACAGCCTCCTCAAAAAATTCCTCTTCCCCGAGGAATCCATCCACATGCTCACCGAGGAGTTGGGCGCCAAGGACCCGTTGAAGGCGCCGACGAGGGAGAACATTATGAAGGAGATGCGGTGGCTGGTGGAGGGGTGCCGCGCCGGCGACTCGCTGGTGTTCCACTTCTCCGGCCACGGCCGGCAGAGGAAGGACGACAACGGCGACGAGGTGGACGGCCGAGACGAGGAGCTCTGCCCAGTGGACTACAAGGTGAGCGGCAACATCTTGGACGACGACATCAACGATGCCATCGTCAAGCCGCTCACCCAAGGCGTGAAGCTGCACGCCATCATCGACACCTGCCACAGCGGCACCATGCTCGACCTCCCCTACCTCTGCCGCTTTAACAGAATGGGTCTATGTTCAAGATACAAGTGGGTTGGCCAAACGCGTTGGCGACTATCCCCAAAGAAAGAGTGGGCGATGGTCCCCGTAGGCGGCCACGCCATCTCCATCAGCGGCTGCAAGGACTACCAGAATTCTCTAGAGCCAGACAACACCGCCGGCGGCGGCGTCATGACATGGAGCTTCCTGGAGGCAGTGGGATCGCGGAGGACGATGACGTATGGGGAGCTGCTGGACTCGATGCGGGCGAAGGTACACCATAGGTTGCAGCAAAGCAGCTCCGGCAAGTGCCTCGTAACGGGCTGCCTCGGCTCGCTCGCCGCCAAGTGTCTCCCCTGCTGCTTCCTCAGCGTGCAGGAGCCGCAGCTCTGTTCGTCGAAGGAGTTCAACGTCTACGAGGAGCAGTTTATCCTGTGACCGACCGCATTGTCCCGGGCACAAGCTCCATTCAGATGAAAACCTCTGCTCCTCCAGCTCCATTCTAATTGCGGATGCTGGATATCATACACGTAGGCTCGCTTTCTTAAAATAAAATTTAAATATTATTGTTCGTAGAAAAGAGTATGATAGTGTGATATCAAAATGTGGACGAGGAAAAAAACCGTGTTCTAAGTATCGTGTATTAGCGAAGGATATATGTTGCTCTGTTGCTGCGGCCATGGCCATGCATGTGTGTTCTTACAAAAACTCAAGCGTGTGATCATATTTATAATAAGGTAGCGCAGAGCGACGGATTGGAACTGAAATTGTGTAATTGAGCGTGTACTTTGTATTGTCCAAATCTGTTTTTATAATTTGTAAGTTTGTTAAG]

[+] EMBL AK063170             [TCTCAACACGCGCGCA CGGGGCGGCATGG CGGTCGTCAGCGGCGGGAAGCGCGCGCTCCTCGTCGGCGTGAGCTACAAGGGCGACACCAGCAGAGAGCTGACGGGCGCGGCCGAAGACGTCAAGAACATGAACAGCCTCCTCAAAAAATTCCTCTTCCCCGAGGAATCCATCCACATGCTCACCGAGGAGTTGGGCGCCAAGGACCCGTTGAAGGCGCCGACGAGGGAGAACATTATGAAGGAGATGCGGTGGCTGGTGGAGGGGTGCCGCGCCGGCGACTCGCTGGTGTTCCACTTCTCCGGCCACGGCCGGCAGAGGAAGGACGACAACGGCGACGAGGTGGACGGCCGAGACGAGGAGCTCTGCCCAGTGGACTACAAGGTGAGCGGCAACATCTTGGACGACGACATCAACGATGCCATCGTCAAGCCGCTCACCCAAGGCGTGAAGCTGCACGCCATCATCGACACCTGCCACAGCGGCACCATGCTCGACCTCCCCTACCTCTGCCGCTTTAACAGAATGGGTCTATGTTCAAGATACAAGTGGGTTGGCCAAACGCGTTGGCGACTATCCCCAAAGAAAGAGTGGGCGATGGTCCCCGTAGGCGGCCACGCCATCTCCATCAGCGGCTGCAAGGACTACCAGAATTCTCTAGAGCCAGACAACACCGCCGGCGGCGGCGTCATGACATGGAGCTTCCTGGAGGCAGTGGGATCGCGGAGGACGATGACGTATGGGGAGCTGCTGGACTCGATGCGGGCGAAGGTACACCATAGGTTGCAGCAAAGCAGCTCCGGCAAGTGCCTCGTAACGGGCTGCCTCGGCTCGCTCGCCGCCAAGTGTCTCCCCTGCTGCTTCCTCAGCGTGCAGGAGCCGCAGCTCTGTTCGTCGAAGGAGTTCAACGTCTACGAGGAGCAGTTTATCCTGTGACCGACCGCATTGTCCCGGGCACAAGCTCCATTCAGATGAAAACCTCTGCTCCTCCAGCTCCATTCTAATTGCGGATGCTGGATATCATACACGTAGGCTCGCTTTCTTAAAATAAAATTTAAATATTATTGTTCGTAGAAAAGAGTATGATAGTGTGATATCAAAATGTGGACGAGGAAAAAAACCGTGTTCTAAGTATCGTGTATTAGCGAAGGATATATGTTGCTCTGTTGCTGCGGCCATGGCCATGCATGTGTGTTCTTACAAAAACTCAAGCGTGTGATCATATTTATAATAAGGTAGCGCAGAGCGACGGATTGGAACTGAAATTGTGTAATTGAGCGTGTACTTTGTATTGTCCAAATCTGTTTTTATAATTTGTAAGTTTGTTAAG]
[+] EMBL CB650255             [          CGCGCACCGGTGCGGCATGGTCGGTCGTCAGCGGCGGGAAGCGCGCGCTCCTCGTCGGCGTGAGCTACAAGGGCGACACCATCAGAGAGCTGACGGGCGCGGCCGAAGACGTCAAGAACATGAACAGCCTCCTCAAAAAATTCCTCTTCCCCGAGGAATCCATCCACATGCTCACCGAGGAGTTGGGCGCCAAGGACCCGTTGAAGGCGCCGACGAGGGAGAACATTATGAAGGAGATGCGGTGGCTGGTGGAGGGGTGCCGCGCCGGCGACTCGCTGGTGTTCCACTTCTCCGGCCACGGCCGGCAGAGGAAGGACGACAACGGCGACGAGGTGGACGGCCGAGACGAGGAGCTCTGCCCAGTGGACTACAAGGTGAGCGGCAACATCTTGGACGACGACATCAACGATGCCATCGTCAAGCCGCTCACCCAAGGCGTGAAGCTGCACGCCATCATCGACACCTGCCACAGCGGCACCATGCTCGACCTCCCCTACCTCTGCCGCTTTAACAGAATGGGTCTATGTTCAAGATACAAGTGGGTTGGCCAAACGCGTTGGCGACTATCCCCAAAGAAAGAGTGGGCGATGGTCCCCGTAGGCGGCCACGCCATCTCCATCAGCGGCTGCAAGGACTACCAGAATTCTCTAGAGCCAGACAACACCGCCGGCGGCGGCGTCATGACATGGAGCTTCCTGGAGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB650256             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCGAAGGTACCCCATAGGTTGCAGCAAAGCAGCTCCGGCAAGTGCCTCGTAACGGGGTGCCTCGGCTCGCTCGCCGCCAAGTGTCTCCCCTGCTGCTTCCTCAGCGTGCAGGAGCCGCAGCTATGTTCGTCGAAGGAGTTCAACGTATATGAGGAGCAGTTTATCCTGTGACCGCCCGCATTGTCCCGGGCACAAGCTCCATTCAGATGAAAACCTCTGGTCCTCCAGGTCCATTTTAATTGCGGATGCTGGATATCATACACGTAGGCTCGCTTTCTTAAAATAAAATTTCAATATTATc                                                                                                                                                                                                                                                                        ]


>consensus_4929#0 TCTCAACACGCGCGCACGGGGCGGCATGGCGGTCGTCAGCGGCGGGAAGCGCGCGCTCCT CGTCGGCGTGAGCTACAAGGGCGACACCAGCAGAGAGCTGACGGGCGCGGCCGAAGACGT CAAGAACATGAACAGCCTCCTCAAAAAATTCCTCTTCCCCGAGGAATCCATCCACATGCT CACCGAGGAGTTGGGCGCCAAGGACCCGTTGAAGGCGCCGACGAGGGAGAACATTATGAA GGAGATGCGGTGGCTGGTGGAGGGGTGCCGCGCCGGCGACTCGCTGGTGTTCCACTTCTC CGGCCACGGCCGGCAGAGGAAGGACGACAACGGCGACGAGGTGGACGGCCGAGACGAGGA GCTCTGCCCAGTGGACTACAAGGTGAGCGGCAACATCTTGGACGACGACATCAACGATGC CATCGTCAAGCCGCTCACCCAAGGCGTGAAGCTGCACGCCATCATCGACACCTGCCACAG CGGCACCATGCTCGACCTCCCCTACCTCTGCCGCTTTAACAGAATGGGTCTATGTTCAAG ATACAAGTGGGTTGGCCAAACGCGTTGGCGACTATCCCCAAAGAAAGAGTGGGCGATGGT CCCCGTAGGCGGCCACGCCATCTCCATCAGCGGCTGCAAGGACTACCAGAATTCTCTAGA GCCAGACAACACCGCCGGCGGCGGCGTCATGACATGGAGCTTCCTGGAGGCAGTGGGATC GCGGAGGACGATGACGTATGGGGAGCTGCTGGACTCGATGCGGGCGAAGGTACACCATAG GTTGCAGCAAAGCAGCTCCGGCAAGTGCCTCGTAACGGGCTGCCTCGGCTCGCTCGCCGC CAAGTGTCTCCCCTGCTGCTTCCTCAGCGTGCAGGAGCCGCAGCTCTGTTCGTCGAAGGA GTTCAACGTCTACGAGGAGCAGTTTATCCTGTGACCGACCGCATTGTCCCGGGCACAAGC TCCATTCAGATGAAAACCTCTGCTCCTCCAGCTCCATTCTAATTGCGGATGCTGGATATC ATACACGTAGGCTCGCTTTCTTAAAATAAAATTTAAATATTATTGTTCGTAGAAAAGAGT ATGATAGTGTGATATCAAAATGTGGACGAGGAAAAAAACCGTGTTCTAAGTATCGTGTAT TAGCGAAGGATATATGTTGCTCTGTTGCTGCGGCCATGGCCATGCATGTGTGTTCTTACA AAAACTCAAGCGTGTGATCATATTTATAATAAGGTAGCGCAGAGCGACGGATTGGAACTG AAATTGTGTAATTGAGCGTGTACTTTGTATTGTCCAAATCTGTTTTTATAATTTGTAAGT TTGTTAAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)