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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4958#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1996 fasta sequence
[CCCCAAGTTGGCGAGATGGCGTCTGCCCGAGAGGATATCCGACTGGCTGCAGCCACGGCGAGCGAAGGAGAAATACCTGCTACCAAGACTTCAAAAAGTGGAGAAAGCGAAGCCAAGACTAAGAAGATTCCCCTAGATCCCTCTGATCCTACTAAAACTGCTGTAATAGGCGCCGAGTTAGATTGTAAATAGGAAAGCGCGCTCATCACCTTTCTTCAGAACAATAAAGATATCTTTGCGTGGAAACCATCTGATATGCCCGGTATTCCTAGAGAGGTGATTGAGCACTCCTTACATGTCAAAGAAGATGCCAAGCCTATCAAACAACGACTCCGCCGATTCGCACAAGACAGGAAGGACGCGATCAAGGAGGAATTAACCAAGCTGTTAGCAGCAGGCTTCATCAAAGAAGTCCTTCATCCCGACTGGCTGGCAAACCCGGTTCTAGTTCGGAAGAAAACAGGGCAATGGCGCATGTGTGTTGATTATACTGACCTCAACAAATCTTGCCCTAAAGATCCTTTTGGGTTGCCTCGCATTGACCAGGTAGTCGACTCGACCGCCGGCTGTGAGCTTCTCAGTTTTTTGGATTGTTACTCGGGGTATCATCAGATCCGACTGAAGGAATCCGACTGCTTGAAGACCTCATTCATCACGCCTTTTGGGGCATACTGCTACGTCACCATGCCGTTCGGACTAAAAAACGCAGGAGCAACTTATCAACGCATGATTCAGAGATGCTTCTCAACACAGATCGGCCGCAACGTTGAAGCCTATGTGGATGATGTAGTCGTCAAGACCAAGCAAAAGGATGATTTGATCTCGGATCTAGAAGAAACCTTCGCGAGCATCCGCGCTTTCAGGATGAAATTAAACCCTGAAAAATACATCTTCGGAGTACCGTCAGGGAAGCTGCTTGGTTTTATGGTGTCTCATAGGGGCATCCAAGCCAACCCGGAGAAAGTTACTGCTATCCTCAACATGAAACCGCCAAGTACCCAGAAAGATGTTCAGAAGCTGACTGGATGCATGGCGGCGCTCAGCCGATTTGTTTCACGACTTGGCGAGCGGGGGATGCCCTTCTTTAAGCTGCTGAAGAAAACAGATAACTTCCAGTGGGGACCCGAAGCACAGAAGGCCTTCGAAGATTTCAAGAAACTCCTCACCGAGCCACCAGTCTTAGCCTCACCACACCCGCAGGAGCCGTTGTTGCTGTATGTATCAGCCACCTCCCAGGTTGTGAGCACAGTCTTGGTCGTTGAGCGCGAGGAAGAAGGCCATGTCCAAAAAGTCCAGCGACCGATTTATTTTGTCAGCGAGGTCCTAGCCGACTCCAAAACGAGGTACCCTCAGGTTCGGAAGCTGTTATATGGTATTCTAATTACTACCAGGAAGCTATCTCACTACTTTCAAGGTCACTCGGTAACGGTGGTCACATCATTTCCACTCGGTGATATACTGCACAACCGCGAAGCAAACGGACGTATTGCCAAGTGGGCTTTGGAGTTGATGTCTTTGGACATATCATTCAAGCCCCGAATTTCAATCAAGTCCCAAGCGTTAGCTGATTTTGTCGCCGAATGGACCGAGTGCCAGGAGGATACCCCCGCGGAGAACATTGAGCACTGGACCATGCATTTTGACGGATCCAAACGACTTTCGGGCATTGGAGCAGGAGTGGTTTTGATTTCCCCAACTGGAGAAAGATTGAGCTATGTGCTTTGGATACATTTTTCGGCGTCCCACAACGTCGCCGAGTATGAGGCCCTTCTTCATGGACTACGGATTGCAATTTCCCTAGGGATAAAGCGTCTGATTGTTCGAGGCGATTCACAGTTGGTTGTCAACCAAGTTATGAAAGAGTGGTCCTGCATTGACGACAATATGATGGCATATCGACAAGAGGTGCGCAAATTGGAAGACAAGTTCGAGGGACTCGAGCTCAGTCACGTTCTTTGACACAACAATGAAGCCGCCGACAGACTTGCCAACTTTG]
[+] EMBL AF259976 [CCCCAAGTTGGCGAGATGGCGTCTGCCCGAGAGGATATCCGACTGGCTGCAGCCACGGCGAGCGAAGGAGAAATACCTGCTACCAAGACTTCAAAAAGTGGAGAAAGCGAAGCCAAGACTAAGAAGATTCCCCTAGATCCCTCTGATCCTACTAAAACTGCTGTAATAGGCGCCGAGTTAGATTGTAAATAGGAAAGCGCGCTCATCACCTTTCTTCAGAACAATAAAGATATCTTTGCGTGGAAACCATCTGATATGCCCGGTATTCCTAGAGAGGTGATTGAGCACTCCTTACATGTCAAAGAAGATGCCAAGCCTATCAAACAACGACTCCGCCGATTCGCACAAGACAGGAAGGACGCGATCAAGGAGGAATTAACCAAGCTGTTAGCAGCAGGCTTCATCAAAGAAGTCCTTCATCCCGACTGGCTGGCAAACCCGGTTCTAGTTCGGAAGAAAACAGGGCAATGGCGCATGTGTGTTGATTATACTGACCTCAACAAATCTTGCCCTAAAGATCCTTTTGGGTTGCCTCGCATTGACCAGGTAGTCGACTCGACCGCCGGCTGTGAGCTTCTCAGTTTTTTGGATTGTTACTCGGGGTATCATCAGATCCGACTGAAGGAATCCGACTGCTTGAAGACCTCATTCATCACGCCTTTTGGGGCATACTGCTACGTCACCATGCCGTTCGGACTAAAAAACGCAGGAGCAACTTATCAACGCATGATTCAGAGATGCTTCTCAACACAGATCGGCCGCAACGTTGAAGCCTATGTGGATGATGTAGTCGTCAAGACCAAGCAAAAGGATGATTTGATCTCGGATCTAGAAGAAACCTTCGCGAGCATCCGCGCTTTCAGGATGAAATTAAACCCTGAAAAATACATCTTCGGAGTACCGTCAGGGAAGCTGCTTGGTTTTATGGTGTCTCATAGGGGCATCCAAGCCAACCCGGAGAAAGTTACTGCTATCCTCAACATGAAACCGCCAAGTACCCAGAAAGATGTTCAGAAGCTGACTGGATGCATGGCGGCGCTCAGCCGATTTGTTTCACGACTTGGCGAGCGGGGGATGCCCTTCTTTAAGCTGCTGAAGAAAACAGATAACTTCCAGTGGGGACCCGAAGCACAGAAGGCCTTCGAAGATTTCAAGAAACTCCTCACCGAGCCACCAGTCTTAGCCTCACCACACCCGCAGGAGCCGTTGTTGCTGTATGTATCAGCCACCTCCCAGGTTGTGAGCACAGTCTTGGTCGTTGAGCGCGAGGAAGAAGGCCATGTCCAAAAAGTCCAGCGACCGATTTATTTTGTCAGCGAGGTCCTAGCCGACTCCAAAACGAGGTACCCTCAGGTTCGGAAGCTGTTATATGGTATTCTAATTACTACCAGGAAGCTATCTCACTACTTTCAAGGTCACTCGGTAACGGTGGTCACATCATTTCCACTCGGTGATATACTGCACAACCGCGAAGCAAACGGACGTATTGCCAAGTGGGCTTTGGAGTTGATGTCTTTGGACATATCATTCAAGCCCCGAATTTCAATCAAGTCCCAAGCGTTAGCTGATTTTGTCGCCGAATGGACCGAGTGCCAGGAGGATACCCCCGCGGAGAACATTGAGCACTGGACCATGCATTTTGACGGATCCAAACGACTTTCGGGCATTGGAGCAGGAGTGGTTTTGATTTCCCCAACTGGAGAAAGATTGAGCTATGTGCTTTGGATACATTTTTCGGCGTCCCACAACGTCGCCGAGTATGAGGCCCTTCTTCATGGACTACGGATTGCAATTTCCCTAGGGATAAAGCGTCTGATTGTTCGAGGCGATTCACAGTTGGTTGTCAACCAAGTTATGAAAGAGTGGTCCTGCATTGACGACAATATGATGGCATATCGACAAGAGGTGCGCAAATTGGAAGACAAGTTCGAGGGACTCGAGCTCAGTCACGTTCTTTGACACAACAATGAAGCCGCCGACAGACTTGCCAACTTTG]
consensusID : consensus_4958#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 266 fasta sequence
[CTCGTGCCGAATCGGTACGAGGCCACTCTTAGCCTCACCACACCCGTCGGAACCGTTGTTGCTGTATGTATCACCCACCTCCCAGGTTGTGAGCACAGTCTTGGTCGTTGAGCGCGAGGAAGAAGGCCATGTCCAAAAAGTCCAGCGACCGATTTATTTTGTCAGCGAGGTCCTATCCGACTCCATAACGAGGGGAGAAGATTTGCATGGGTTAGATCGCAGTTTTACAGGTTCTTGATTGTTTTTCGTAATAAGTGCAAGAGCTG]
[+] EMBL CF324665 [CTCGTGCCGAATCGGTACGAGGCCACTCTTAGCCTCACCACACCCGTCGGAACCGTTGTTGCTGTATGTATCACCCACCTCCCAGGTTGTGAGCACAGTCTTGGTCGTTGAGCGCGAGGAAGAAGGCCATGTCCAAAAAGTCCAGCGACCGATTTATTTTGTCAGCGAGGTCCTATCCGACTCCATAACGAGGGGAGAAGATTTGCATGGGTTAGATCGCAGTTTTACAGGTTCTTGATTGTTTTTCGTAATAAGTGCAAGAGCTG]
[+] EMBL CF325634 [CTCGTGCCGAATCGGCACGAGGCCAGTCTTAGCCTCACCACACCCGCATGATCCGTTGTTGCTGTATGTATCAACCACCTCCCAGGTTGTGAGCACAGTCTTGGTCGTTGATCGCGAGGAAGAAGGCCATGTCCAAAAAGTCCAGCCACCGATTTATTTTGTTATCGAGGCCCTAGCCGACTCCAAAACGAGGGGAGAAGAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4958#0 CCCCAAGTTGGCGAGATGGCGTCTGCCCGAGAGGATATCCGACTGGCTGCAGCCACGGCG 60
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 AGCGAAGGAGAAATACCTGCTACCAAGACTTCAAAAAGTGGAGAAAGCGAAGCCAAGACT 120
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 AAGAAGATTCCCCTAGATCCCTCTGATCCTACTAAAACTGCTGTAATAGGCGCCGAGTTA 180
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 GATTGTAAATAGGAAAGCGCGCTCATCACCTTTCTTCAGAACAATAAAGATATCTTTGCG 240
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 TGGAAACCATCTGATATGCCCGGTATTCCTAGAGAGGTGATTGAGCACTCCTTACATGTC 300
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 AAAGAAGATGCCAAGCCTATCAAACAACGACTCCGCCGATTCGCACAAGACAGGAAGGAC 360
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 GCGATCAAGGAGGAATTAACCAAGCTGTTAGCAGCAGGCTTCATCAAAGAAGTCCTTCAT 420
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 CCCGACTGGCTGGCAAACCCGGTTCTAGTTCGGAAGAAAACAGGGCAATGGCGCATGTGT 480
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 GTTGATTATACTGACCTCAACAAATCTTGCCCTAAAGATCCTTTTGGGTTGCCTCGCATT 540
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 GACCAGGTAGTCGACTCGACCGCCGGCTGTGAGCTTCTCAGTTTTTTGGATTGTTACTCG 600
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 GGGTATCATCAGATCCGACTGAAGGAATCCGACTGCTTGAAGACCTCATTCATCACGCCT 660
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 TTTGGGGCATACTGCTACGTCACCATGCCGTTCGGACTAAAAAACGCAGGAGCAACTTAT 720
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 CAACGCATGATTCAGAGATGCTTCTCAACACAGATCGGCCGCAACGTTGAAGCCTATGTG 780
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 GATGATGTAGTCGTCAAGACCAAGCAAAAGGATGATTTGATCTCGGATCTAGAAGAAACC 840
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 TTCGCGAGCATCCGCGCTTTCAGGATGAAATTAAACCCTGAAAAATACATCTTCGGAGTA 900
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 CCGTCAGGGAAGCTGCTTGGTTTTATGGTGTCTCATAGGGGCATCCAAGCCAACCCGGAG 960
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 AAAGTTACTGCTATCCTCAACATGAAACCGCCAAGTACCCAGAAAGATGTTCAGAAGCTG 1020
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 ACTGGATGCATGGCGGCGCTCAGCCGATTTGTTTCACGACTTGGCGAGCGGGGGATGCCC 1080
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 TTCTTTAAGCTGCTGAAGAAAACAGATAACTTCCAGTGGGGACCCGAAGCACAGAAGGCC 1140
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 TTCGAAGATTTCAAGAAACTCCTCACCGAGCCACCAGTCTTAGCCTCACCACACCCGCAG 1200
consensus_4958#1 --------CTCGTGCCGAATCGGTACGAGGCCAC---TCTTAGCCTCACCACACCCGTCG 49
* * ** ** ***** ******************** *
consensus_4958#0 GAGCCGTTGTTGCTGTATGTATCAGCCACCTCCCAGGTTGTGAGCACAGTCTTGGTCGTT 1260
consensus_4958#1 GAACCGTTGTTGCTGTATGTATCACCCACCTCCCAGGTTGTGAGCACAGTCTTGGTCGTT 109
** ********************* ***********************************
consensus_4958#0 GAGCGCGAGGAAGAAGGCCATGTCCAAAAAGTCCAGCGACCGATTTATTTTGTCAGCGAG 1320
consensus_4958#1 GAGCGCGAGGAAGAAGGCCATGTCCAAAAAGTCCAGCGACCGATTTATTTTGTCAGCGAG 169
************************************************************
consensus_4958#0 GTCCTAGCCGACTCCAAAACGAGGTACCCTCAGGTTCGGAAGCTGTTATATGGTATTCTA 1380
consensus_4958#1 GTCCTATCCGACTCCATAACGAGGGGAG--AAGATTTGCATGG-GTTAGATCGCAGTTTT 226
****** ********* ******* ** ** * * * **** ** * * * *
consensus_4958#0 ATTACTACCAGGAAGCTATCT-CACTACTTTCAAGGTCACTCGGTAACGGTGGTCACATC 1439
consensus_4958#1 ACAGGTTCTTGATTGTTTTTCGTAATAAGTGCAAGAGCTG-------------------- 266
* * * * * * * * ** * **** *
consensus_4958#0 ATTTCCACTCGGTGATATACTGCACAACCGCGAAGCAAACGGACGTATTGCCAAGTGGGC 1499
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 TTTGGAGTTGATGTCTTTGGACATATCATTCAAGCCCCGAATTTCAATCAAGTCCCAAGC 1559
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 GTTAGCTGATTTTGTCGCCGAATGGACCGAGTGCCAGGAGGATACCCCCGCGGAGAACAT 1619
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 TGAGCACTGGACCATGCATTTTGACGGATCCAAACGACTTTCGGGCATTGGAGCAGGAGT 1679
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 GGTTTTGATTTCCCCAACTGGAGAAAGATTGAGCTATGTGCTTTGGATACATTTTTCGGC 1739
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 GTCCCACAACGTCGCCGAGTATGAGGCCCTTCTTCATGGACTACGGATTGCAATTTCCCT 1799
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 AGGGATAAAGCGTCTGATTGTTCGAGGCGATTCACAGTTGGTTGTCAACCAAGTTATGAA 1859
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 AGAGTGGTCCTGCATTGACGACAATATGATGGCATATCGACAAGAGGTGCGCAAATTGGA 1919
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 AGACAAGTTCGAGGGACTCGAGCTCAGTCACGTTCTTTGACACAACAATGAAGCCGCCGA 1979
consensus_4958#1 ------------------------------------------------------------
consensus_4958#0 CAGACTTGCCAACTTTG 1996
consensus_4958#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||