Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 496 cluster # 496       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_496#0 length = 871 sequences # 2  

consensusID : consensus_496#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 871
fasta sequence
                              [ACTGCATTGTTGTGGATCGAGTAGCTATAGCTAGCTAGTGATGGAGATCTTGGTGAGTGCACTGCTCCTGCTCCTCGTGCCACCCTTGTCCGCCCTCCTCGCCGTCGCCGCGCCGAGCCTCGCGTGGCCGTCGGGGTCGTCGTCGGTGAGGAAGCTGATCGCCAAGAAGGTGGCGCCGGAGCAGGCGGCGCGCGACGAGCTGCTGCGCGTGGCGCGGTACAGTAGCGCTAGCGCCGCCGCTGCCGCTAGTGCTGTCCAACAACCAGGCGGCAGCGAGAGTAGTCGTCCGGCGGCGGCGGCGGCGGATGATGGTGGGCGGCCGGATCAGTGCGCGGTGTGCCTGAGCGGCATCGAGGAGGGCGACGAGGTGAGGGAGCTCCGGTGCCGGCACCTGTTCCACCGTGGCTGCCTCGACCGGTGGTGGTTGTCGGCGCGGCCGCCCGCCACGTGCCCGCTCTGCCGCTGCCGGCTCCTGCAGAGCCCGTCGGCGGCGGCGGACGACGGCGACGGCGACGGCGAGGAGGATTCGGACTCGGACATGGTGATGTTCATGGCGTACCTGCGAAGCAGTAGCACCTGGCTCTAGCCATTAAGGGCGTGTTTAGTTCCAAAAACTTTTCTCAAAAACATCGCATCAAATCTTTAGACACATATATAGGACATTAAATATAGATAAATAAAAAACTAATGGCATAGTTTGCATATAAATCGCGAGACGAATCTTTTGAGTCTAATTAGGCCATGATTAACTATAAGTGCTACAATAACTTACATGTGCTAATGACAGATTGATTAGGCTTAAAAGATTCGTCTCGTGGTTTTAGTTTTTTTATTCGTGACCGAAAATCCCTTTTGACATCCGGTCAAACGT]

[+] EMBL AK062636             [ACTGCATTGTTGTGGATCGAGTAGCTATAGCTAGCTAGTGATGGAGATCTTGGTGAGTGCACTGCTCCTGCTCCTCGTGCCACCCTTGTCCGCCCTCCTCGCCGTCGCCGCGCCGAGCCTCGCGTGGCCGTCGGGGTCGTCGTCGGTGAGGAAGCTGATCGCCAAGAAGGTGGCGCCGGAGCAGGCGGCGCGCGACGAGCTGCTGCGCGTGGCGCGGTACAGTAGCGCTAGCGCCGCCGCTGCCGCTAGTGCTGTCCAACAACCAGGCGGCAGCGAGAGTAGTCGTCCGGCGGCGGCGGCGGCGGATGATGGTGGGCGGCCGGATCAGTGCGCGGTGTGCCTGAGCGGCATCGAGGAGGGCGACGAGGTGAGGGAGCTCCGGTGCCGGCACCTGTTCCACCGTGGCTGCCTCGACCGGTGGTGGTTGTCGGCGCGGCCGCCCGCCACGTGCCCGCTCTGCCGCTGCCGGCTCCTGCAGAGCCCGTCGGCGGCGGCGGACGACGGCGACGGCGACGGCGAGGAGGATTCGGACTCGGACATGGTGATGTTCATGGCGTACCTGCGAAGCAGTAGCACCTGGCTCTAGCCATTAAGGGCGTGTTTAGTTCCAAAAACTTTTCTCAAAAACATCGCATCAAATCTTTAGACACATATATAGGACATTAAATATAGATAAATAAAAAACTAATGGCATAGTTTGCATATAAATCGCGAGACGAATCTTTTGAGTCTAATTAGGCCATGATTAACTATAAGTGCTACAATAACTTACATGTGCTAATGACAGATTGATTAGGCTTAAAAGATTCGTCTCGTGGTTTTAGTTTTTTTATTCGTGACCGAAAATCCCTTTTGACATCCGGTCAAACGT]
[+] EMBL CB676435             [          TGTGGATCGAGTAGCTATAGCTAGCTAGTGATGGAGATCTTGGTGAGTGCACTGCTCCTGCTCCTCGTGCCACCCTTGTCCGCCCTCCTCGCCGTCGCCGCGCCGAGCCTCGCGTGGCCGTCGGGGTCGTCGTCGGTGAGGAAGCTGATCGCCAAGAAGGTGGCGCCGGAGCAGGCGGCGCGCGACGAGCTGCTGCGCGTGGCGCGGTACAGTAGCGCTAGCGTCGCCGCTGCCGCTAGTGCTGTCCAACAACCAGGCGGCAGCGAGAGTAGTCGTCCGGCGGCGGCGGCGGCGGATGATGGTGGGCGGCCGGATCAGTGCGCGGTGTGCCTGAGCGGCATCGAGGAGGGCGACGAGGTGAGGGAGCTCCGGTGCCGGCACCTGTTCCACCGTGGCTGCCTCGACCGGTGGTGGTTGTCGGCGCGGCCGCCCGCCACGTGCCCGCTCTGCCGCTGCCGGCTCCTGCAGAGCCCGTCGGCGGCGGCGGACGACGGCGACGGCGACGGCGAGGAGGATTCGGACTCGGACATGGTGATGTTCATGGCGTACCTGCGAAGCAGTAGCACCTGGCTCTAGCCATTAAGGGCGTGTTTAGTTCCAAAAACTTTTCTCAAAAACATCGCATCAAATCTTTAGACACATATATAGGACATTAAATATAGATAAATAAAAAACTAATGGCATAGTTTGCATATAAATCGCGAGACGAATCTTTTGAGTCTAATTAGGCCATGATTAACTATAAGTGCTACAATAACTTACATGTGCTAATGACAGATTGATTAGGCTTAAAAGATTCGTCTCGTGGTTTTAGTTTTTTTATTCGTGACCGAAA                          ]


>consensus_496#0 ACTGCATTGTTGTGGATCGAGTAGCTATAGCTAGCTAGTGATGGAGATCTTGGTGAGTGC ACTGCTCCTGCTCCTCGTGCCACCCTTGTCCGCCCTCCTCGCCGTCGCCGCGCCGAGCCT CGCGTGGCCGTCGGGGTCGTCGTCGGTGAGGAAGCTGATCGCCAAGAAGGTGGCGCCGGA GCAGGCGGCGCGCGACGAGCTGCTGCGCGTGGCGCGGTACAGTAGCGCTAGCGCCGCCGC TGCCGCTAGTGCTGTCCAACAACCAGGCGGCAGCGAGAGTAGTCGTCCGGCGGCGGCGGC GGCGGATGATGGTGGGCGGCCGGATCAGTGCGCGGTGTGCCTGAGCGGCATCGAGGAGGG CGACGAGGTGAGGGAGCTCCGGTGCCGGCACCTGTTCCACCGTGGCTGCCTCGACCGGTG GTGGTTGTCGGCGCGGCCGCCCGCCACGTGCCCGCTCTGCCGCTGCCGGCTCCTGCAGAG CCCGTCGGCGGCGGCGGACGACGGCGACGGCGACGGCGAGGAGGATTCGGACTCGGACAT GGTGATGTTCATGGCGTACCTGCGAAGCAGTAGCACCTGGCTCTAGCCATTAAGGGCGTG TTTAGTTCCAAAAACTTTTCTCAAAAACATCGCATCAAATCTTTAGACACATATATAGGA CATTAAATATAGATAAATAAAAAACTAATGGCATAGTTTGCATATAAATCGCGAGACGAA TCTTTTGAGTCTAATTAGGCCATGATTAACTATAAGTGCTACAATAACTTACATGTGCTA ATGACAGATTGATTAGGCTTAAAAGATTCGTCTCGTGGTTTTAGTTTTTTTATTCGTGAC CGAAAATCCCTTTTGACATCCGGTCAAACGT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)