These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1467 fasta sequence [CTATTATTCGTGAAGCTCACGCGCACCTTCTCCTCTCCGCCATGGCCGCCGCTCGCTGCCTCCCGCTCCGGGCCTCGCCGCCGGAGGTCGCCAAGGCCTTCTCCTCCTCCATCCCTGCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCACCACCACCGCGGCCGCCTCTCTCCCTCTCCGCGCCGCCGTTCCCCCGAGCTCCGGCCGCCGTATCCCGCCGCTCCGGTGCGCCTCCTCCTCCTCGTCGTCGCAGGGCTCCGCGTCGCCGGATATCGCCGTGCTCCTCGAAGTGGAAGGAGTTCTTGCAGATGTGTATCGCTTCGGCAATCGCCAAGCTTTCAATGTAGCATTTCAAAATCTTGGGCTGGATTGTGCAAATTGGACAGAGCCAATATATGCTGATTTAGTGAGGAAAGCTAGTGGCGACGAGGAAAGGATGTTGTTATTATTCTTCAACAGAATTGGGTGGCCTACTTCTTTGCCAACTAACGAGAAAGAATCATTTATGAAAAGTGTTCTTCGTGAAAAGCTGAAAGCTTTGGAAGTGTTCTCAGCTTCTGATAGCTTACCACTGCGGCCTGGAGTTGAACAGTTCATTGATGATGCGCTTAATGAGGGTGTGCCTGTCGCCATATTGACAACATACGGGAGAAATGGAGAGAAAACTTCAAGATATATCATTGAAAAATTAGGCCAAGAGAGAACATCAAAAATACATATTGTTGGGAAAGAAGAGGTTGAAAGAAGCTTATATGGACAACTTGTTCTTGGTGAAGGAGTAGCCTCCAGTTTGGATGAACAGCTAGTTAAGGAAGCACAAAAGGCTGCTTCTGCAGAAAAGCAGAGGATAGCAGAAGAAGTTGCGTCCATTCTGAAACTTAGTGTTGATATCAATGCAGCGTCTAAAAGCTCCGAGAAGATTATTGTCACTCTACGCGCTGGATCCGAGTATGTTGGACGGGACGTGCAAAACTGTGTTCTTGTCGCAGGTAGCCAATCTGGCGTTCTTGCAGCTGAGCGCATTGGTATGCCATGCATAGTTGTTAGAAGCAGCCTAACCGCCAGAGCTGAGTTTCACTCTGCGAAGGCCGTCATGGATGGATTTGGTGGTACTGACTTGACCATATCGAAACTATTGAGCAAGAAGTGGTCTTGACAACTCGGCACTACATTGGAGTTGCCTGCTACTAGTTTGAATTTGTATGTAACCCATGGATTGGGTATATGTTACAACCAAAATGAGGCCTCTATGTAGTACATTGCAGAAAGAAAACTATGAGAAGCACAAGCTACTTCAGGCATCATTTTTTTTTTGGGAACAGAAAATGTACTGAACTCGCTGTACTTGGACGAGGCAATTGAACTCATTGTCTGGTTTGGTCTTTGCATAAAAGTGAGTAATAAGATGGTGATTTTTCATCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK067843 [CTATTATTCGTGAAGCTCACGCGCACCTTCTCCTCTCCGCCATGGCCGCCGCTCGCTGCCTCCCGCTCCGGGCCTCGCCGCCGGAGGTCGCCAAGGCCTTCTCCTCCTCCATCCCTGCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCACCACCACCGCGGCCGCCTCTCTCCCTCTCCGCGCCGCCGTTCCCCCGAGCTCCGGCCGCCGTATCCCGCCGCTCCGGTGCGCCTCCTCCTCCTCGTCGTCGCAGGGCTCCGCGTCGCCGGATATCGCCGTGCTCCTCGAAGTGGAAGGAGTTCTTGCAGATGTGTATCGCTTCGGCAATCGCCAAGCTTTCAATGTAGCATTTCAAAATCTTGGGCTGGATTGTGCAAATTGGACAGAGCCAATATATGCTGATTTAGTGAGGAAAGCTAGTGGCGACGAGGAAAGGATGTTGTTATTATTCTTCAACAGAATTGGGTGGCCTACTTCTTTGCCAACTAACGAGAAAGAATCATTTATGAAAAGTGTTCTTCGTGAAAAGCTGAAAGCTTTGGAAGTGTTCTCAGCTTCTGATAGCTTACCACTGCGGCCTGGAGTTGAACAGTTCATTGATGATGCGCTTAATGAGGGTGTGCCTGTCGCCATATTGACAACATACGGGAGAAATGGAGAGAAAACTTCAAGATATATCATTGAAAAATTAGGCCAAGAGAGAACATCAAAAATACATATTGTTGGGAAAGAAGAGGTTGAAAGAAGCTTATATGGACAACTTGTTCTTGGTGAAGGAGTAGCCTCCAGTTTGGATGAACAGCTAGTTAAGGAAGCACAAAAGGCTGCTTCTGCAGAAAAGCAGAGGATAGCAGAAGAAGTTGCGTCCATTCTGAAACTTAGTGTTGATATCAATGCAGCGTCTAAAAGCTCCGAGAAGATTATTGTCACTCTACGCGCTGGATCCGAGTATGTTGGACGGGACGTGCAAAACTGTGTTCTTGTCGCAGGTAGCCAATCTGGCGTTCTTGCAGCTGAGCGCATTGGTATGCCATGCATAGTTGTTAGAAGCAGCCTAACCGCCAGAGCTGAGTTTCACTCTGCGAAGGCCGTCATGGATGGATTTGGTGGTACTGACTTGACCATATCGAAACTATTGAGCAAGAAGTGGTCTTGACAACTCGGCACTACATTGGAGTTGCCTGCTACTAGTTTGAATTTGTATGTAACCCATGGATTGGGTATATGTTACAACCAAAATGAGGCCTCTATGTAGTACATTGCAGAAAGAAAACTATGAGAAGCACAAGCTACTTCAGGCATCATTTTTTTTTTGGGAACAGAAAATGTACTGAACTCGCTGTACTTGGACGAGGCAATTGAACTCATTGTCTGGTTTGGTCTTTGCATAAAAGTGAGTAATAAGATGGTG ] [+] EMBL AU085951 [ AGTTGCCTGCTACTAGTTTGAATTTGTATGTAACCCATGGATTGGGTATATGTTNCAACCAAAATNAGGCCTNTATGTAGTNCATTGCANAAAGAAAACTATNAGAAGCCCAAGCTACTTCAGGCATCATTTTTTTTTTGGGAACAGAAAATGTACTGAACTCNCTGNACTTGGACGAGGCAATTGAACNCATTGTCTGGTTTGGTCTTTGCATAAAAGTGAGTAATAANATGGTGATTTTTCATCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_4987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [GGNGNAGCGGNTGGGNCGAGTATGTTGGACGGGACGTGCAAAACTGTGTTCTTGTCGCAGGTAGCCAATCTGGCGTTCTTGCAGCTGAGCGCATTGGTATGCCATGCATAGTTGTTAGAAGCAGCCTAACCGCCAGAGCTGAGTTTCACTCTGCGAAGGCCGTCATGGATGGATTTGGTGGTACTGACTTGACCATATCGAAACTATTGAGCAAGAAGTGGTCTTGACAACTCGGCACTACATTGGAGTTGCCTGCTACTAGTTTGAATTTGTATGTAACCCATGGATTGGGTATATGTTACAACCAAAATGAGGCCTCTATGTAGNACATTGCAGAAGAAAACTATGAGAAGCACAAGCTACTTCAGGCATCATTTTTTTTTTTGGGACAGAAATGTACCTAACTGNTGTACTTGGCGGGGCAATTAACTCATTNCTT] [+] EMBL OSC3251 [GGNGNAGCGGNTGGGNCGAGTATGTTGGACGGGACGTGCAAAACTGTGTTCTTGTCGCAGGTAGCCAATCTGGCGTTCTTGCAGCTGAGCGCATTGGTATGCCATGCATAGTTGTTAGAAGCAGCCTAACCGCCAGAGCTGAGTTTCACTCTGCGAAGGCCGTCATGGATGGATTTGGTGGTACTGACTTGACCATATCGAAACTATTGAGCAAGAAGTGGTCTTGACAACTCGGCACTACATTGGAGTTGCCTGCTACTAGTTTGAATTTGTATGTAACCCATGGATTGGGTATATGTTACAACCAAAATGAGGCCTCTATGTAGNACATTGCAGAAGAAAACTATGAGAAGCACAAGCTACTTCAGGCATCATTTTTTTTTTTGGGACAGAAATGTACCTAACTGNTGTACTTGGCGGGGCAATTAACTCATTNCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4987#0 CTATTATTCGTGAAGCTCACGCGCACCTTCTCCTCTCCGCCATGGCCGCCGCTCGCTGCC 60 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 TCCCGCTCCGGGCCTCGCCGCCGGAGGTCGCCAAGGCCTTCTCCTCCTCCATCCCTGCCT 120 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 CCTCCTCCTCCTCCTCCTCCTCTTCCTCCACCACCACCGCGGCCGCCTCTCTCCCTCTCC 180 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 GCGCCGCCGTTCCCCCGAGCTCCGGCCGCCGTATCCCGCCGCTCCGGTGCGCCTCCTCCT 240 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 CCTCGTCGTCGCAGGGCTCCGCGTCGCCGGATATCGCCGTGCTCCTCGAAGTGGAAGGAG 300 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 TTCTTGCAGATGTGTATCGCTTCGGCAATCGCCAAGCTTTCAATGTAGCATTTCAAAATC 360 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 TTGGGCTGGATTGTGCAAATTGGACAGAGCCAATATATGCTGATTTAGTGAGGAAAGCTA 420 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 GTGGCGACGAGGAAAGGATGTTGTTATTATTCTTCAACAGAATTGGGTGGCCTACTTCTT 480 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 TGCCAACTAACGAGAAAGAATCATTTATGAAAAGTGTTCTTCGTGAAAAGCTGAAAGCTT 540 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 TGGAAGTGTTCTCAGCTTCTGATAGCTTACCACTGCGGCCTGGAGTTGAACAGTTCATTG 600 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 ATGATGCGCTTAATGAGGGTGTGCCTGTCGCCATATTGACAACATACGGGAGAAATGGAG 660 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 AGAAAACTTCAAGATATATCATTGAAAAATTAGGCCAAGAGAGAACATCAAAAATACATA 720 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 TTGTTGGGAAAGAAGAGGTTGAAAGAAGCTTATATGGACAACTTGTTCTTGGTGAAGGAG 780 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 TAGCCTCCAGTTTGGATGAACAGCTAGTTAAGGAAGCACAAAAGGCTGCTTCTGCAGAAA 840 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 AGCAGAGGATAGCAGAAGAAGTTGCGTCCATTCTGAAACTTAGTGTTGATATCAATGCAG 900 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 CGTCTAAAAGCTCCGAGAAGATTATTGTCACTCTACGCGCTGGATCCGAGTATGTTGGAC 960 consensus_4987#1 ------------------------------GGNGNAGCGGNTGGGNCGAGTATGTTGGAC 30 *** * ************** consensus_4987#0 GGGACGTGCAAAACTGTGTTCTTGTCGCAGGTAGCCAATCTGGCGTTCTTGCAGCTGAGC 1020 consensus_4987#1 GGGACGTGCAAAACTGTGTTCTTGTCGCAGGTAGCCAATCTGGCGTTCTTGCAGCTGAGC 90 ************************************************************ consensus_4987#0 GCATTGGTATGCCATGCATAGTTGTTAGAAGCAGCCTAACCGCCAGAGCTGAGTTTCACT 1080 consensus_4987#1 GCATTGGTATGCCATGCATAGTTGTTAGAAGCAGCCTAACCGCCAGAGCTGAGTTTCACT 150 ************************************************************ consensus_4987#0 CTGCGAAGGCCGTCATGGATGGATTTGGTGGTACTGACTTGACCATATCGAAACTATTGA 1140 consensus_4987#1 CTGCGAAGGCCGTCATGGATGGATTTGGTGGTACTGACTTGACCATATCGAAACTATTGA 210 ************************************************************ consensus_4987#0 GCAAGAAGTGGTCTTGACAACTCGGCACTACATTGGAGTTGCCTGCTACTAGTTTGAATT 1200 consensus_4987#1 GCAAGAAGTGGTCTTGACAACTCGGCACTACATTGGAGTTGCCTGCTACTAGTTTGAATT 270 ************************************************************ consensus_4987#0 TGTATGTAACCCATGGATTGGGTATATGTTACAACCAAAATGAGGCCTCTATGTAGTACA 1260 consensus_4987#1 TGTATGTAACCCATGGATTGGGTATATGTTACAACCAAAATGAGGCCTCTATGTAGNACA 330 ******************************************************** *** consensus_4987#0 TTGCAGAAAGAAAACTATGAGAAGCACAAGCTACTTCAGGCATCATTTTTTTTTTGGGAA 1320 consensus_4987#1 TTGCAGAA-GAAAACTATGAGAAGCACAAGCTACTTCAGGCATCATTTTTTTTTTTGGGA 389 ******** ********************************************** ** * consensus_4987#0 CAGAAAATGTACTGAACTCGCTGTACTTGGACGAGGCAATTGAACTCATTGTCTGGTTTG 1380 consensus_4987#1 CAGAAA-TGTACCTAACT-GNTGTACTTGG-CGGGGCAATT-AACTCATTNCTT------ 439 ****** ***** **** * ********* ** ******* ******** * consensus_4987#0 GTCTTTGCATAAAAGTGAGTAATAAGATGGTGATTTTTCATCAGCAAAAAAAAAAAAAAA 1440 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 AAAAAAAAAAAAAAAAAAAAAAAAAAA 1467 consensus_4987#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||