These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 727 fasta sequence [CCATTCCTCTCTTCTTCCTCCCTTTCTCCTCCTCGCCACCTAACGTCGTCGACGCTCGCCGGCGGCGAGGTGTGATATCTGTGCGGTGATCATCGATGGGGCCTCAGCAAGACCGGTCGGCGGCCAAGCCGTACGCGAACGGCAGCACGGCGGCGGCGGCGGCGGCGGGGAGGAAGGAGAACAACAAGGTGGTGCGGTACAGGGAGTGCCAGCGCAACCAC-GCCGCCAGCATCGGCGGCCACGCCGTCGACGGCTGCCGCGAGTTCATGGCGTCGGGCGCCGAGGGCACCGCCGCCGCGCTCCTCTGCGCCGCCTGCGGCTGCCACCGGAGCTTCCACAGGCGAGAGGTGGAGGCCGCCGCCGCCGAATGCGACTGCTCCTCCGACACCTCCTCCGGCACCGGCCGCCGGTGATCGCCGTGGATTTGATTCGGCCTCGTCGTGCGAGTAGATCAGCATCATCAGCAGGTAAGGTGGTATTGGCGATTTGGCATTCAAAGGATTCGGTGGATGAATGAATCTGATTGTGTATGAACCGATTAAAAAGTTCTCTTCCTTTTTTTCTTTCATATTTTGATTTTTGGTGAATTGATGGTGTGTAATGTAACATAATATATGTTAAAAAGCATACGCATAAGAAGCGTTCATGTAACTGCTGTGTCCATGTACAGATTATATTCAGATGAACATCTTAATTATATTCTGTAAAATAACTGTGCTTTTCAAAA] [+] EMBL AK063715 [CCATTCCTCTCTTCTTCCTCCCTTTCTCCTCCTCGCCACCTAACGTCGTCGACGCTCGCCGGCGGCGAGGTGTGATATCTGTGCGGTGATCATCGATGGGGCCTCAGCAAGACCGGTCGGCGGCCAAGCCGTACGCGAACGGCAGCACGGCGGCGGCGGCGGCGGCGGGGAGGAAGGAGAACAACAAGGTGGTGCGGTACAGGGAGTGCCAGCGCAACCAC GCCGCCAGCATCGGCGGCCACGCCGTCGACGGCTGCCGCGAGTTCATGGCGTCGGGCGCCGAGGGCACCGCCGCCGCGCTCCTCTGCGCCGCCTGCGGCTGCCACCGGAGCTTCCACAGGCGAGAGGTGGAGGCCGCCGCCGCCGAATGCGACTGCTCCTCCGACACCTCCTCCGGCACCGGCCGCCGGTGATCGCCGTGGATTTGATTCGGCCTCGTCGTGCGAGTAGATCAGCATCATCAGCAGGTAAGGTGGTATTGGCGATTTGGCATTCAAAGGATTCGGTGGATGAATGAATCTGATTGTGTATGAACCGATTAAAAAGTTCTCTTCCTTTTTTTCTTTCATATTTTGATTTTTGGTGAATTGATGGTGTGTAATGTAACATAATATATGTTAAAAAGCATACGCATAAGAAGCGTTCATGTAACTGCTGTGTCCATGTACAGATTATATTCAGATGAACATCTTAATTATATTCTGTAAAATAACTGTGCTT ] [+] EMBL BI804433 [ CAGCGCAACCACTGCCGCCAGCATC GC GCCACGCCGTCGAC GCT CCGCGAGTTCATGGCGTCGGGC CCGAGGGCACCGCC CCGCGCTCCTCTGC CCGCCTGCGGCTGCCACCGGAGCTTCCACAGGCGAGAGGTGGA GCCGCCGCCGCCGAATGCGACTGCTCCTCCGACACCTCCTCCGGCACCGGCCGCCGGTGATCGCCGTGGATTTGATTCGGCCTCGTCGTGCGAGTAGATCAGCATCATCAGCAGGTAAGGTGGTATTGGCGATTTGGCATTC AAGGATTCGGTGGATGAATGAATCTGATTGTGTATGAACCGATTAAAAAGTTCTCTTCC TTTTTTCTTTCATATTTTGATTTTTGGTGAATTGATGGTGTGTAATGTAACATAATATATGTTAAAAAGCATACGCATAAGAAGCGTTCATGTAACTGCTGTGTCCATGTACAGATTATATTCAGATGAACATCTTAATTATATTCTGTAAAATAATTGTGCTTTTCAAAA] consensusID : consensus_5012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [AAGCTTGGTGCCGAGTGAGAGAGCAGCAAAGCGAGAGTGTGCGTGCGTGGGCGTGTCGCGCCATGATGAAGAGGCTGGTGGTCCTGAGGAGGCGGGAGCCGGCGGTGAGGTTCAGCTGCTGCGGCGTCAGGTACGGCGAGTGCCGCCGCAACCACGCGGCCAGCACCGGCGGCCACGCCGTCGACGGCTGCCGCGAGTTCATCGCCGCCGAGGACGGCGGCGGCGGCAACAGCACAAGCGCCGTGGGCGTCGCCGCGGCGGCGCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAGGGTGCAGGTGTACGAGGTGGCCTGGGACGACGACTGCGCCTCCGGCGACACCTCCTCCTCCTCGCCGTCGTCGTCGTCCTCGTTGAGCAGCGAGTAGACCAGCTGCGGCAATGGCGGCGGCGCGCCGCCGCCGCAGCTGCCGTCTCCGGCCGGTGCATCGTCATGCTGCATGCCTAGGATATGATCAGACCTCGCGATTGTTAATTAATTAATTAATTAATTAATTATTAGCTTGTGTAATCTGTATACCCATGGATTGATTGACCCTATTCCCCCCAAGTGATTATTTGCTCTCATCTCTAATTAATCAATTAATTAATGCCTTA] [+] EMBL AK058840 [AAGCTTGGTGCCGAGTGAGAGAGCAGCAAAGCGAGAGTGTGCGTGCGTGGGCGTGTCGCGCCATGATGAAGAGGCTGGTGGTCCTGAGGAGGCGGGAGCCGGCGGTGAGGTTCAGCTGCTGCGGCGTCAGGTACGGCGAGTGCCGCCGCAACCACGCGGCCAGCACCGGCGGCCACGCCGTCGACGGCTGCCGCGAGTTCATCGCCGCCGAGGACGGCGGCGGCGGCAACAGCACAAGCGCCGTGGGCGTCGCCGCGGCGGCGCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAGGGTGCAGGTGTACGAGGTGGCCTGGGACGACGACTGCGCCTCCGGCGACACCTCCTCCTCCTCGCCGTCGTCGTCGTCCTCGTTGAGCAGCGAGTAGACCAGCTGCGGCAATGGCGGCGGCGCGCCGCCGCCGCAGCTGCCGTCTCCGGCCGGTGCATCGTCATGCTGCATGCCTAGGATATGATCAGACCTCGCGATTGTTAATTAATTAATTAATTAATTAATTATTAGCTTGTGTAATCTGTATACCCATGGATTGATTGACCCTATTCCCCCCAAGTGATTATTTGCTCTCATCTCTAATTAATCAATTAATTAATGCCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5012#0 CCATTCCTCTCTTCTTCCTCCCTTTCTCCTCCTCGCCACCTAACGTCGTCGACGCTCGCC 60 consensus_5012#1 ------------------------------------------------------------ consensus_5012#0 GGCGGCGAGGTGTGATATCTGTGCGGTGATCATCGATGGGGCCTCAGCAAGACCGGTCGG 120 consensus_5012#1 --AAGCTTGGTGCCGAGTGAGAGAGCAGCAAAGCGAGAGTGTGCGTGCGTGGGCGTGTCG 58 ** **** * * * * * * *** * * ** * ** * consensus_5012#0 CGGCCAAGCCGTACGCGAACGGCAGCACGGCGGCGGCGGCGGCGGCGGGGAGGAAGGAGA 180 consensus_5012#1 CG-CCATGATG-AAGAGGCTGGTGGTCCTGAGGAGGCGGGAGC--CGGCGGTGAGGTTCA 114 ** *** * * * * * ** * * * ** ***** ** *** * ** * * consensus_5012#0 ACAACAAGGTGGTGCGGTACAGGGAGTGCCAGCGCAACCACGCCGCCAGCATCGGCGGCC 240 consensus_5012#1 GCTGCTGCGGCGTCAGGTACGGCGAGTGCCGCCGCAACCACGCGGCCAGCACCGGCGGCC 174 * * * ** ***** * ******* *********** ******* ******** consensus_5012#0 ACGCCGTCGACGGCTGCCGCGAGTTCAT-------------GGCGTCGG----------- 276 consensus_5012#1 ACGCCGTCGACGGCTGCCGCGAGTTCATCGCCGCCGAGGACGGCGGCGGCGGCAACAGCA 234 **************************** **** *** consensus_5012#0 ---GCGCCGAGGGCACCGCCGCCGCGCTCCTC---TGCGCCGCCTGCGGCTGCCACCGGA 330 consensus_5012#1 CAAGCGCCGTGGGCGTCGCCGCGGCGGCGCTCAAGTGCGCCGCCTGCGGCTGCCACCGCA 294 ****** **** ****** *** *** *********************** * consensus_5012#0 GCTTCCACAGGCGAG---AGGTGGAGGCCGCCGCCGCCGAATGCGACTGCTCCTCCGACA 387 consensus_5012#1 GCTTCCACCGCAGGGTGCAGGTGTACGAGGTGGCCTGGGACGACGACTGCGCCTCCGGCG 354 ******** * * * ***** * * * *** ** ******* ****** * consensus_5012#0 CCTCCTCCGGCACCGGCCGCCGGTGATCGCCGTGGATTTGATTCGGCCTCGTCGTGCGAG 447 consensus_5012#1 ACACCTCCTCCTCC--TCGCCG----TCGTCGTCGTCCTCGTTGAGCA-------GCGAG 401 * ***** * ** ***** *** *** * * ** ** ***** consensus_5012#0 TAGATCAGCATCATCAGCAGGTAAGGTGGTATTGGCGATTTGGCATTCAAAGGATTCGGT 507 consensus_5012#1 TAGACCAGCTGCGGCAATGGCGGCGGCG----CGCCGCCGCCGCAGCTGCCGTCTCCGGC 457 **** **** * ** * ** * * ** *** * * *** consensus_5012#0 GGATGAATGAATCTGATTGTGTATGAACCGATTAAAAAGTTCTCTTCCTTTTTTTCTTTC 567 consensus_5012#1 CGGTGCATCG---TCATGCTGCATGCCTAGGATATGATCAGACCTCGCGATTGTTAATTA 514 * ** ** * ** ** *** * ** * ** * ** ** ** consensus_5012#0 ATATTTTGATTT-TTGGTGAATTGATGGTGTGTAATGTAACATAATATATGTTAAAAAGC 626 consensus_5012#1 ATTAATTAATTAATTAATTATTAGCTTGTGTAATCTGTATACCCATGGAT-TGATTGACC 573 ** ** *** ** * * * * * **** **** ** ** * * * * consensus_5012#0 ATACGCATAAGAAGCGTTCATGTAACTGCTGTGTCCATGTACAGATTATATTCAGATGAA 686 consensus_5012#1 CTATTCCCCCCAAGTGATTAT-------TTGCTCTCATCTCTAATTAATCAATTAATTAA 626 ** * *** * * ** ** *** * * * ** ** ** consensus_5012#0 CATCTTAATTATATTCTGTAAAATAACTGTGCTTTTCAAAA 727 consensus_5012#1 TGCCTTA---------------------------------- 633 **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||