|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5023#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1367 fasta sequence
[TTCCCCGCGAAAATATTTATACGGGGGCCGCGCCCGCGGCGCGAGTCGTCGCTGCTCCCACTCATCCGCCAACCGGTTGCCCCCGAATCCCGACGAACCTTCGCTGCTCCCGGGTGGTGCTGTTAGCAACAACAGGCATCAAATAATGTCGATGAGCTATGACGGGGATCAAAGCGAGGACCGGCAAAGCGAAGAGGTTCAATCAGCATATAAAAGTCACGGTGGGGGTGTGTTAAGGGGGTATTTTAATTTGGATAGGTCTGAAGAGCAAAATGAAGAAAATGAGTGGAGTTGGATTCCTCAAGATGGTGATCCTCTAGCTGAATCAATGTCTTCGCTTCAGACGACACAAGAAGCTCTTGAGAATGAGATGCAAAAACTGTCAGATCTTAGCAAGGAGTTAGGGGCTGACAACTTCAGCAGTGATAACAGAGCAAACAACGCATTCGTTTCGCCTGATGAGGACGATGTTCTTGAAACGAATCAAAAGATGAGCCATCTAGAACAGAAACTGGAAGAGGCGTCAAACACTATCAGAGAGAAGAACTCGGTATTATCACAACTTCAAGAACTCATCGACGGCATGCACATAGCAACACCGGCGGAGAGGGCCTTCGACATCGATCAGCTGGAGACGGACCTCGACCGCCAGCTCCAGGAGAAGATCGAAGCCGAGATCCAATCCCTCGTCATGCTGAAAGCGAGGCAGAGCTGGCAGGTCCGGACCGAGGACCAGCTCGCCCTCAAGGAGCACAAGCTGTCCTCCTCCGGTGGCGACAATGGCGATGGCGATTGCGACAGCGACAACGCGAGGATGATGATGATGGTGAAGCTGCGGGAGACGGAGAGCAAGATCGTCAAGCTGAAGGAGCAGGTGGAGAAGCTGGAGGTCCACGAGAGGGAGCTGTTCGGGACGACGCAGGTGCTGAGGATGCAGAGCCGGACGCTCAAGATATGCCTCTTCGGCCTCCTCCAGCTCGTCCTGCTCTTCCTCTCCCTCAAGGCGTTCTTCGCCCAGGTCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCAAAGGCCTGATGATTGTGTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAATTTCGATACGGTTGACTAGCTGATTGCAGGTTGTGATGTACAGCTGAATTACGAAAACTCATGT-AAAAAAATGTCAGTTTGTGCATAAACTAGCCATCAGTCCTGTCCATTATAGGCCGAGCACGAGAACAGCAGTAAAAAATTTCCTTGGCTGACGATGAAAACGGTCGAAACTGTAGCATGTCTATTCGAAAAATGACTCTTGGTCGGTCGGAAATAAATTATATT]
[+] EMBL AK069769 [TTCCCCGCGAAAATATTTATACGGGGGCCGCGCCCGCGGCGCGAGTCGTCGCTGCTCCCACTCATCCGCCAACCGGTTGCCCCCGAATCCCGACGAACCTTCGCTGCTCCCGGGTGGTGCTGTTAGCAACAACAGGCATCAAATAATGTCGATGAGCTATGACGGGGATCAAAGCGAGGACCGGCAAAGCGAAGAGGTTCAATCAGCATATAAAAGTCACGGTGGGGGTGTGTTAAGGGGGTATTTTAATTTGGATAGGTCTGAAGAGCAAAATGAAGAAAATGAGTGGAGTTGGATTCCTCAAGATGGTGATCCTCTAGCTGAATCAATGTCTTCGCTTCAGACGACACAAGAAGCTCTTGAGAATGAGATGCAAAAACTGTCAGATCTTAGCAAGGAGTTAGGGGCTGACAACTTCAGCAGTGATAACAGAGCAAACAACGCATTCGTTTCGCCTGATGAGGACGATGTTCTTGAAACGAATCAAAAGATGAGCCATCTAGAACAGAAACTGGAAGAGGCGTCAAACACTATCAGAGAGAAGAACTCGGTATTATCACAACTTCAAGAACTCATCGACGGCATGCACATAGCAACACCGGCGGAGAGGGCCTTCGACATCGATCAGCTGGAGACGGACCTCGACCGCCAGCTCCAGGAGAAGATCGAAGCCGAGATCCAATCCCTCGTCATGCTGAAAGCGAGGCAGAGCTGGCAGGTCCGGACCGAGGACCAGCTCGCCCTCAAGGAGCACAAGCTGTCCTCCTCCGGTGGCGACAATGGCGATGGCGATTGCGACAGCGACAACGCGAGGATGATGATGATGGTGAAGCTGCGGGAGACGGAGAGCAAGATCGTCAAGCTGAAGGAGCAGGTGGAGAAGCTGGAGGTCCACGAGAGGGAGCTGTTCGGGACGACGCAGGTGCTGAGGATGCAGAGCCGGACGCTCAAGATATGCCTCTTCGGCCTCCTCCAGCTCGTCCTGCTCTTCCTCTCCCTCAAGGCGTTCTTCGCCCAGGTCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCAAAGGCCTGATGATTGTGTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAATTTCGATACGGTTGACTAGCTGATTGCAGGTTGTGATGTACAGCTGAATTACGAAAACTCATGT AAAAAAATGT ]
[-] EMBL CB659025 [ CAACACCGGCGGAGAGGGCCTTCGACATCGATCAGCTGGAGACGGACCTCGACCGCCAGCTCCAGGAGAAGATCGAAGCCGAGATCCAATCCCTCGTCATGCTGAAAGCGAGGCAGAGCTGGCAGGTCCGGACCGAGGACCAGCTCGCCCTCAAGGAGCACAAGCTGTCCTCCTCCGGTGGCGACAATGGCGATGGCGATTGCGACAGCGACAACGCGAGGATGATGATGATGGTGAAGCTGCGGGAGACGGAGAGCAAGATCGTCAAGCTGAAGGAGCAGGTGGAGAAGCTGGAGGTCCACGAGAGGGAGCTGTTCGGGACGACGCAGGTGCTGAGGATGCAGAGCCGGACGCTCAAGATATGCCTCTTCGGCCTCCTCCAGCTCGTCCTGCTCTTCCTCTCCCTCAAGGCGTTCTTCGCCCAGGTCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCAAAGGCCTGATGATTGTGTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAATTTCGATACGGTTGACTAGCTGATTGCAGGTTGTGATGTACAGCTGAATTACGAAAACTCATGTAAAAAAAATGTCAGTTTGTGCATAAACTAGCCATCAGTCCTGTCCATTATAGGCCGAGCACGAGAACAGCAGTAAAAAATTTCCTTGGCTGACGATGAAAACGGTCGAAACTGTAGCATGTCTATTCGAAAAATGACTCTTGGTCGGTCGGAAATAAATTATATT]
consensusID : consensus_5023#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[GGGGGAAAGGGCCTTCGACATCGATCAGCTGAAAACGGACCTCGACCCGCAAGCTCCAGGAGAAGATCGAAGCCGAGATCCAATCCCTCGTCATGCTGAAAGCGAGGCAGAGCTGGCAGGTCCGGACCGAGGACCAGCTCGCCCTCAAGGAGCACAAGCTGTCCTCCTCCGGTGGCGACAATGGCGATGGCGATTGCGACAGCGACAACGCGAGGATGATGATGATGGTGAAGCTGCGGGAGACGGAGAGCAAGATCGTCAAGCTGAAGGAGCAGGTGGAGAAGCTGGAGGTCCACGAGAGGGAGCTGTTCGGGACGACGCAGGTGCTGAGGATGCAGAGCCGGACGCTCAAGATATGCCTCTTCGGCCTCCTCCAGCTCGTCCTACTCTTCCTCTCCCTCAAGGCGTTCTTCGCCCAGGTCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCGAAGGCCTGATGATTGTGTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAATTTCGATACGGTTGACTAGCTGATTGCAGGTTGTGATGTACAGCTGAATTACGAAAACTCTTGTAAAAAAAATGTCAGTTTGTGCATAAAACTAGCCATCAGTCCTGTCCATTAAAAAAAAAAAA]
[-] EMBL CA760526 [GGGGGAAAGGGCCTTCGACATCGATCAGCTGAAAACGGACCTCGACCCGCAAGCTCCAGGAGAAGATCGAAGCCGAGATCCAATCCCTCGTCATGCTGAAAGCGAGGCAGAGCTGGCAGGTCCGGACCGAGGACCAGCTCGCCCTCAAGGAGCACAAGCTGTCCTCCTCCGGTGGCGACAATGGCGATGGCGATTGCGACAGCGACAACGCGAGGATGATGATGATGGTGAAGCTGCGGGAGACGGAGAGCAAGATCGTCAAGCTGAAGGAGCAGGTGGAGAAGCTGGAGGTCCACGAGAGGGAGCTGTTCGGGACGACGCAGGTGCTGAGGATGCAGAGCCGGACGCTCAAGATATGCCTCTTCGGCCTCCTCCAGCTCGTCCTACTCTTCCTCTCCCTCAAGGCGTTCTTCGCCCAGGTCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCGAAGGCCTGATGATTGTGTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAATTTCGATACGGTTGACTAGCTGATTGCAGGTTGTGATGTACAGCTGAATTACGAAAACTCTTGTAAAAAAAATGTCAGTTTGTGCATAAAACTAGCCATCAGTCCTGTCCATTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5023#0 TTCCCCGCGAAAATATTTATACGGGGGCCGCGCCCGCGGCGCGAGTCGTCGCTGCTCCCA 60
consensus_5023#1 ------------------------------------------------------------
consensus_5023#0 CTCATCCGCCAACCGGTTGCCCCCGAATCCCGACGAACCTTCGCTGCTCCCGGGTGGTGC 120
consensus_5023#1 ------------------------------------------------------------
consensus_5023#0 TGTTAGCAACAACAGGCATCAAATAATGTCGATGAGCTATGACGGGGATCAAAGCGAGGA 180
consensus_5023#1 ------------------------------------------------------------
consensus_5023#0 CCGGCAAAGCGAAGAGGTTCAATCAGCATATAAAAGTCACGGTGGGGGTGTGTTAAGGGG 240
consensus_5023#1 ------------------------------------------------------------
consensus_5023#0 GTATTTTAATTTGGATAGGTCTGAAGAGCAAAATGAAGAAAATGAGTGGAGTTGGATTCC 300
consensus_5023#1 ------------------------------------------------------------
consensus_5023#0 TCAAGATGGTGATCCTCTAGCTGAATCAATGTCTTCGCTTCAGACGACACAAGAAGCTCT 360
consensus_5023#1 ------------------------------------------------------------
consensus_5023#0 TGAGAATGAGATGCAAAAACTGTCAGATCTTAGCAAGGAGTTAGGGGCTGACAACTTCAG 420
consensus_5023#1 ------------------------------------------------------------
consensus_5023#0 CAGTGATAACAGAGCAAACAACGCATTCGTTTCGCCTGATGAGGACGATGTTCTTGAAAC 480
consensus_5023#1 ------------------------------------------------------------
consensus_5023#0 GAATCAAAAGATGAGCCATCTAGAACAGAAACTGGAAGAGGCGTCAAACACTATCAGAGA 540
consensus_5023#1 ------------------------------------------------------------
consensus_5023#0 GAAGAACTCGGTATTATCACAACTTCAAGAACTCATCGACGGCATGCACATAGCAACACC 600
consensus_5023#1 ------------------------------------------------------------
consensus_5023#0 GGCGGAGAGGGCCTTCGACATCGATCAGCTGGAGACGGACCTCGACC-GCCAGCTCCAGG 659
consensus_5023#1 GGGGGAAAGGGCCTTCGACATCGATCAGCTGAAAACGGACCTCGACCCGCAAGCTCCAGG 60
** *** ************************ * ************* ** *********
consensus_5023#0 AGAAGATCGAAGCCGAGATCCAATCCCTCGTCATGCTGAAAGCGAGGCAGAGCTGGCAGG 719
consensus_5023#1 AGAAGATCGAAGCCGAGATCCAATCCCTCGTCATGCTGAAAGCGAGGCAGAGCTGGCAGG 120
************************************************************
consensus_5023#0 TCCGGACCGAGGACCAGCTCGCCCTCAAGGAGCACAAGCTGTCCTCCTCCGGTGGCGACA 779
consensus_5023#1 TCCGGACCGAGGACCAGCTCGCCCTCAAGGAGCACAAGCTGTCCTCCTCCGGTGGCGACA 180
************************************************************
consensus_5023#0 ATGGCGATGGCGATTGCGACAGCGACAACGCGAGGATGATGATGATGGTGAAGCTGCGGG 839
consensus_5023#1 ATGGCGATGGCGATTGCGACAGCGACAACGCGAGGATGATGATGATGGTGAAGCTGCGGG 240
************************************************************
consensus_5023#0 AGACGGAGAGCAAGATCGTCAAGCTGAAGGAGCAGGTGGAGAAGCTGGAGGTCCACGAGA 899
consensus_5023#1 AGACGGAGAGCAAGATCGTCAAGCTGAAGGAGCAGGTGGAGAAGCTGGAGGTCCACGAGA 300
************************************************************
consensus_5023#0 GGGAGCTGTTCGGGACGACGCAGGTGCTGAGGATGCAGAGCCGGACGCTCAAGATATGCC 959
consensus_5023#1 GGGAGCTGTTCGGGACGACGCAGGTGCTGAGGATGCAGAGCCGGACGCTCAAGATATGCC 360
************************************************************
consensus_5023#0 TCTTCGGCCTCCTCCAGCTCGTCCTGCTCTTCCTCTCCCTCAAGGCGTTCTTCGCCCAGG 1019
consensus_5023#1 TCTTCGGCCTCCTCCAGCTCGTCCTACTCTTCCTCTCCCTCAAGGCGTTCTTCGCCCAGG 420
************************* **********************************
consensus_5023#0 TCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCAAAGGCCTGA 1079
consensus_5023#1 TCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCGAAGGCCTGA 480
************************************************** *********
consensus_5023#0 TGATTGTGTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAA 1139
consensus_5023#1 TGATTGTGTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAA 540
************************************************************
consensus_5023#0 TTTCGATACGGTTGACTAGCTGATTGCAGGTTGTGATGTACAGCTGAATTACGAAAACTC 1199
consensus_5023#1 TTTCGATACGGTTGACTAGCTGATTGCAGGTTGTGATGTACAGCTGAATTACGAAAACTC 600
************************************************************
consensus_5023#0 ATGTAAAAAAA-TGTCAGTTTGTGCATAAA-CTAGCCATCAGTCCTGTCCATTATAGGCC 1257
consensus_5023#1 TTGTAAAAAAAATGTCAGTTTGTGCATAAAACTAGCCATCAGTCCTGTCCATTAAAAAAA 660
********** ****************** *********************** *
consensus_5023#0 GAGCACGAGAACAGCAGTAAAAAATTTCCTTGGCTGACGATGAAAACGGTCGAAACTGTA 1317
consensus_5023#1 AAAAA------------------------------------------------------- 665
* *
consensus_5023#0 GCATGTCTATTCGAAAAATGACTCTTGGTCGGTCGGAAATAAATTATATT 1367
consensus_5023#1 --------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||