These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 576 fasta sequence [TTTTTTTTTTTTTTTGAAAGCCTGAAACCATAGCTACCTTTCATAGCAGTTGAAACAATACTACAACTGTATAGACTTCACTGAACTAAATCGTAGCTCAGCAAGAATTATACGACATGGACGGTAAACCCTATCACCCCCTAAGCTACACATACGTAAACACCAAGAAAATTGCATCGAGGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAAGGTACTTTCAGAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGGGGAAGCTGGTTGGCGCAAACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAAAAACAGAACTGTCCTCCTCCTTCACAGCTAAAAACACCAAGAGTGCAAGCAAGGGGTAGCTCACGGTAGTAAGCGCCCAATTCACAATCAGTTGCGAAATTAGGCTTGGCTTGTGGGTATCAATTTGCCATGCCACAGCCGCTCCAGCACTTTGCACTCCCTTATAGAACCCAACATATCTCCTGAGGATTTGGGGGGCGTTGGCAAGGGCCCCAATTATCCCCCCTTGGC] [+] EMBL CA763641 [TTTTTTTTTTTTTTTGAAAGCCTGAAACCATAGCTACCTTTCATAGCAGTTGAAACAATACTACAACTGTATAGACTTCACTGAACTAAATCGTAGCTCAGCAAGAATTATACGACATGGACGGTAAACCCTATCACCCCCTAAGCTACACATACGTAAACACCAAGAAAATTGCATCGAGGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAAGGTACTTTCAGAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGGGGAAGCTGGTTGGCGCAAACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAAAAACAGAACTGTCCTCCTCCTTCACAGCTAAAAACACCAAGAGTGCAAGCAAGGGGTAGCTCACGGTAGTAAGCGCCCAATTCACAATCAGTTGCGAAATTAGGCTTGGCTTGTGGGTATCAATTTGCCATGCCACAGCCGCTCCAGCACTTTGCACTCCCTTATAGAACCCAACATATCTCCTGAGGATTTGGGGGGCGTTGGCAAGGGCCCCAATTATCCCCCCTTGGC] [+] EMBL CA763642 [TTTTTTTTTTTTTTTGAAAGCCTGAAACCATAGCTACCTTTCATAGCAGTTGAAACAATACTACAACTGTATAGACTTCACTGAACTAAATCGTAGCTCAGCAAGAATTATACGACATGGACGGTAAACCCTATCACCCCCTAAGCTACACATACGTAAACACCAAGAAAATTGCATCGAGGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAAGGTACTTTCAGAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGGGGAAGCTGGTTGGCGCAAACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAAAAACAGAACTGTCCTCCTCCTTCACAGCTAAAAACACCAAGAGTGCAAGCAAGGGGTAGCTCACGGTAGTAAGCGCCCAATTCACAATCAGTTGCGAAATTAGGCTTGGCTTGTGGGTATCAATTTGCCATGCCACAGCCGCTCCAGCACTTTGCACTCCCTTATAGAACCCAACATATCTCCTGAGGATTTGGGGGGCGTTGGCAAGGGCCCCAATTATCCCCCCTTGGC] consensusID : consensus_5048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [TTTTTTCGCAGATGAAAGCCTGAAACCATAGCTACCTTTCATAGCAGTTGAAACAATAAGCTACACATACGTAAACACCAAGAAAATTGCATCGAGGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAATGTACTTTCAAAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGTGGAAGCTGGTTGGTGCAGACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAGAAACAGAACTGTCCTCCTCCTTCACAGCTAAGNAACGACCAAGAGTGCAAGCAGGGGTAGCTCACGGGAGTAAGCGCCCAATTCACAATCNAATTGCGAAATTAGGCGTTGTCT] [-] EMBL AU086068 [TTTTTTCGCAGATGAAAGCCTGAAACCATAGCTACCTTTCATAGCAGTTGAAACAATAAGCTACACATACGTAAACACCAAGAAAATTGCATCGAGGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAATGTACTTTCAAAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGTGGAAGCTGGTTGGTGCAGACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAGAAACAGAACTGTCCTCCTCCTTCACAGCTAAGNAACGACCAAGAGTGCAAGCAGGGGTAGCTCACGGGAGTAAGCGCCCAATTCACAATCNAATTGCGAAATTAGGCGTTGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5048#0 TTTTTTTTTTTTTTTGAAAGCCTGAAACCATAGCTACCTTTCATAGCAGTTGAAACAATA 60 consensus_5048#1 ------------------------------------------------------------ consensus_5048#0 CTACAACTGTATAGACTTCACTGAACTAAATCGTAGCTCAGCAAGAATTATACGACATGG 120 consensus_5048#1 -------------TTTTTTCGCAGATGAAAGCCTGA---AACCATAGCTACCTTTCATAG 44 ** * *** * * * * * * ** *** * consensus_5048#0 ACGGTAAACCCTATCACCCCCTAAGCTACACATACGTAAACACCAAGAAAATTGCATCGA 180 consensus_5048#1 CAGTTGAAACAA---------TAAGCTACACATACGTAAACACCAAGAAAATTGCATCGA 95 * * ** * *************************************** consensus_5048#0 GGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAAGG 240 consensus_5048#1 GGAAACTTACTTTCTATACCATGGCCCCTAAATCACTCTACTCCTTTGATTTCTAAAATG 155 ********************************************************** * consensus_5048#0 TACTTTCAGAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGGGGAAGCTGGTTG 300 consensus_5048#1 TACTTTCAAAGGAAGGAACACACTGAAAAAACTCCAGATCTCCTCAGTGGAAGCTGGTTG 215 ******** ************************************** ************ consensus_5048#0 GCGCAAACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAAAAACAGAACTGTCCT 360 consensus_5048#1 GTGCAGACAGTTTGCTATCTTTCTCTTTGCCATCCTCAACAGAAGAAACAGAACTGTCCT 275 * *** ************************************** *************** consensus_5048#0 CCTCCTTCACAGCTAAAAAC--ACCAAGAGTGCAAGCAAGGGGTAGCTCACGGTAGTAAG 418 consensus_5048#1 CCTCCTTCACAGCTAAGNAACGACCAAGAGTGCAAGCA-GGGGTAGCTCACGGGAGTAAG 334 **************** * **************** ************** ****** consensus_5048#0 CGCCCAATTCACAATCAG-TTGCGAAATTAGGCTTGGCTTGTGGGTATCAATTTGCCATG 477 consensus_5048#1 CGCCCAATTCACAATCNAATTGCGAAATTAGGCGTTGTCT-------------------- 374 **************** ************** * * * consensus_5048#0 CCACAGCCGCTCCAGCACTTTGCACTCCCTTATAGAACCCAACATATCTCCTGAGGATTT 537 consensus_5048#1 ------------------------------------------------------------ consensus_5048#0 GGGGGGCGTTGGCAAGGGCCCCAATTATCCCCCCTTGGC 576 consensus_5048#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||