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Oryza sativa
cluster # 5074 cluster # 5074       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5074#0 length = 1475 sequences # 3  

consensusID : consensus_5074#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1475
fasta sequence
                              [GTGCGTGCTTGCTTGCTGCAAGAAATGAGCTGCTTGGGTTGGTTCAAGAAGCGGAGGTCGTCCAAGAGCAAGGAATCGTCGGGGAGGCGGGGCTCGACGACGACGACGGTGTCGGCGGTGAGCACGAGCAGGTCGGACGACTCCGGGGCGGTGAGGCCGGCGAGCAAGTCGACGGGGTCGACGTCGTCGCACCGGAGCATCTCGTCGCTGTACGAGGAGCGCGGCCACGGCCAGCTCCGGGACTTCGACTACGACGAGCTCCAGGCCGCCACCAACGGCTTCAGCCGCGCCCAGAAGCTCGGCGAGGGCGGCTTCGGCAGCGTCTACAAGGGCTTCGTCCGCTCCTCCCCCGCCGACGGCAAGGCCGCCGATCGCCTCGCCGTCGCCGTCAAGTGCCTGAACCAGCGGGGTCTCCAGGGACATAAGCAGTGGTTGGCGGAAGTACAGTTCCTTGGGGTTCTTGAGCACCCAAACCTTGTAAAGCTTCTTGGATATTGTGCCGTTGATGGTGAAAGGGGGCCACAAAGATTATTGGTGTATGAGTATATGCCTAATAAGAGCCTGGAAGATCACTTATTCGTCCGAGCTTATCCTCCTCTCTCATGGAATAGAAGGCTTCAAATAATCTTGGGTGCTGCAGAAGGATTAGCTTACCTGCATGAAGGGCAAGTTCAGGTAATCTACCGGGACTTCAAAGCATCTAACATTTTGTTGGACAAAGACTTCAGAGCAAAGCTGTCGGACTTCGGGCTAGCAAGGGAGGGACCAACAGGAGCAAACACTCACGTCTCAACAGCGGTGGTTGGGACGCACGGGTACGCGGCGCCGGACTACATAGAGACGGGGCACCTGACGGTGAAGAGCGACGTGTGGAGCTTCGGGGTGGTGCTGTACGAGATCCTGACGGGGCGGCGGACGCTGGACCGCCACCGGCCGCAGGGGGAGCAGAAGCTGCTGGAGTGGGTCGCCCAGTTCGCCCCCGACAGCCGCAACTTCCGCATGATCATGGATCCCAGGCTCCGCGGCGAGTACTCCGTCAAGGCCGCCCGCGACATCGCCAAGCTCGCCGAGTCCTGCCTCCTCAAGAACGCCAAGGAGCGCCCCACCATGTCCGAGGTCGTCGACGTCCTCCGCCGCGCCGTCCAGTCGCAGCCCGACCCTCCTCCTCCCCCCGCCGCCGCCGCCGCCGCCTCCGGCAAGGGGAAGAGGGTCGACGTCGCGCCGCAGCCGGCGAGGAGGAGGTGAGGTTGCACTCTGCTGCTATCATCGATCACGGCATGAATGAAGAAAGAAAAGTACAG-AAAGAGAGACACAGAGACGAGTTGGTGGATTCTTGGCGTTTTTGTTTTTTGTTTTCCTTTCTATTTTTTAGGCTTATTTAGGATGAGGATAGTAGTATGAGAATACATTTGATTTGATTGGTAGATAACTACTCCCTCCGTCCCATAATCTAAGGGATTTTGAGTTTTTAAAAA]

[+] EMBL AK070024             [GTGCGTGCTTGCTTGCTGCAAGAAATGAGCTGCTTGGGTTGGTTCAAGAAGCGGAGGTCGTCCAAGAGCAAGGAATCGTCGGGGAGGCGGGGCTCGACGACGACGACGGTGTCGGCGGTGAGCACGAGCAGGTCGGACGACTCCGGGGCGGTGAGGCCGGCGAGCAAGTCGACGGGGTCGACGTCGTCGCACCGGAGCATCTCGTCGCTGTACGAGGAGCGCGGCCACGGCCAGCTCCGGGACTTCGACTACGACGAGCTCCAGGCCGCCACCAACGGCTTCAGCCGCGCCCAGAAGCTCGGCGAGGGCGGCTTCGGCAGCGTCTACAAGGGCTTCGTCCGCTCCTCCCCCGCCGACGGCAAGGCCGCCGATCGCCTCGCCGTCGCCGTCAAGTGCCTGAACCAGCGGGGTCTCCAGGGACATAAGCAGTGGTTGGCGGAAGTACAGTTCCTTGGGGTTCTTGAGCACCCAAACCTTGTAAAGCTTCTTGGATATTGTGCCGTTGATGGTGAAAGGGGGCCACAAAGATTATTGGTGTATGAGTATATGCCTAATAAGAGCCTGGAAGATCACTTATTCGTCCGAGCTTATCCTCCTCTCTCATGGAATAGAAGGCTTCAAATAATCTTGGGTGCTGCAGAAGGATTAGCTTACCTGCATGAAGGGCAAGTTCAGGTAATCTACCGGGACTTCAAAGCATCTAACATTTTGTTGGACAAAGACTTCAGAGCAAAGCTGTCGGACTTCGGGCTAGCAAGGGAGGGACCAACAGGAGCAAACACTCACGTCTCAACAGCGGTGGTTGGGACGCACGGGTACGCGGCGCCGGACTACATAGAGACGGGGCACCTGACGGTGAAGAGCGACGTGTGGAGCTTCGGGGTGGTGCTGTACGAGATCCTGACGGGGCGGCGGACGCTGGACCGCCACCGGCCGCAGGGGGAGCAGAAGCTGCTGGAGTGGGTCGCCCAGTTCGCCCCCGACAGCCGCAACTTCCGCATGATCATGGATCCCAGGCTCCGCGGCGAGTACTCCGTCAAGGCCGCCCGCGACATCGCCAAGCTCGCCGAGTCCTGCCTCCTCAAGAACGCCAAGGAGCGCCCCACCATGTCCGAGGTCGTCGACGTCCTCCGCCGCGCCGTCCAGTCGCAGCCCGACCCTCCTCCTCCCCCCGCCGCCGCCGCCGCCGCCTCCGGCAAGGGGAAGAGGGTCGACGTCGCGCCGCAGCCGGCGAGGAGGAGGTGAGGTTGCACTCTGCTGCTATCATCGATCACGGCATGAATGAAGAAAGAAAAGTACAG AAAGAGAGACACAGAGACGAGTTGGTGGATTCTTGGCGTTTTTGTTTTTTGTTTTCCTTTCTATTTTTTAGGCTTATTTAGGATGAGGATAGTAGTATGAGAATACATTTGATTTGATTG                                                      ]
[+] EMBL BI812143             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTGCTGGAGTGGTTCGCCCAGTTCG CCCCGACAGCCGCAACTTCCGCATGATCATGGATCCCAGGCTCCGCGGCGAGTACTCCGTCAAGGCCGCCCGCGACATCGCCAAGCTCGCCGAGTCCTGCCTCCTCAAGAACGCCAAGGAGCGCCCCACCATGTCCGAGGTCGTCGACGTCCTCCGCCGCGCCGTCCAGTCGCAGCCCGACCCTCCTCCTCCCCCCGCCGCCGCCGCCGCCGCCTCCGGCAAGGGGAAGAGGGTCGACGTCGCGCCGCAGCCGGCGAGGAGGAGGTGAGGTTGCACTCTGCTGCTATCATCGATCACGGCATGAATGAAGAAAGAAAAGTACCGCAAAGAGAGACACAGAGACGAGTTGGTGGATTCTTGGCGTTTTTGTTTTTTGTTTTCCTTTCTATTTTTTAGGCTTATTTAGGATGAGGATAGTAGTATGAGAATACATTTGATTTGATTGGTAGATAACTACTCCCTCCGTCCCATAATCTAAGGGATTTTGAGTTTTTAAAAA]
[+] EMBL BI812035             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CGACGTCGC CC CAGCCGGCGAGGAGGAGGTGAGGTTGCACTCTGCTGCTATCATCGATCACGGCATGAATGAAGAAAGAAAAGTACAG AAAGAGAGACACAGAGACGAGTTGGTGGATTCTTGGCGTTTTTGTTTTTTGTTTTCCTTTCTATTTTTTAGGCTTATTTAGGATGAGGATAGTAGTATGAGAATACATTTGATTTGATTGGTAGATAACTACTCCCTCCGTCCCATAATATAAGGGATTTTGAGTTTTTAAAAA]


>consensus_5074#0 GTGCGTGCTTGCTTGCTGCAAGAAATGAGCTGCTTGGGTTGGTTCAAGAAGCGGAGGTCG TCCAAGAGCAAGGAATCGTCGGGGAGGCGGGGCTCGACGACGACGACGGTGTCGGCGGTG AGCACGAGCAGGTCGGACGACTCCGGGGCGGTGAGGCCGGCGAGCAAGTCGACGGGGTCG ACGTCGTCGCACCGGAGCATCTCGTCGCTGTACGAGGAGCGCGGCCACGGCCAGCTCCGG GACTTCGACTACGACGAGCTCCAGGCCGCCACCAACGGCTTCAGCCGCGCCCAGAAGCTC GGCGAGGGCGGCTTCGGCAGCGTCTACAAGGGCTTCGTCCGCTCCTCCCCCGCCGACGGC AAGGCCGCCGATCGCCTCGCCGTCGCCGTCAAGTGCCTGAACCAGCGGGGTCTCCAGGGA CATAAGCAGTGGTTGGCGGAAGTACAGTTCCTTGGGGTTCTTGAGCACCCAAACCTTGTA AAGCTTCTTGGATATTGTGCCGTTGATGGTGAAAGGGGGCCACAAAGATTATTGGTGTAT GAGTATATGCCTAATAAGAGCCTGGAAGATCACTTATTCGTCCGAGCTTATCCTCCTCTC TCATGGAATAGAAGGCTTCAAATAATCTTGGGTGCTGCAGAAGGATTAGCTTACCTGCAT GAAGGGCAAGTTCAGGTAATCTACCGGGACTTCAAAGCATCTAACATTTTGTTGGACAAA GACTTCAGAGCAAAGCTGTCGGACTTCGGGCTAGCAAGGGAGGGACCAACAGGAGCAAAC ACTCACGTCTCAACAGCGGTGGTTGGGACGCACGGGTACGCGGCGCCGGACTACATAGAG ACGGGGCACCTGACGGTGAAGAGCGACGTGTGGAGCTTCGGGGTGGTGCTGTACGAGATC CTGACGGGGCGGCGGACGCTGGACCGCCACCGGCCGCAGGGGGAGCAGAAGCTGCTGGAG TGGGTCGCCCAGTTCGCCCCCGACAGCCGCAACTTCCGCATGATCATGGATCCCAGGCTC CGCGGCGAGTACTCCGTCAAGGCCGCCCGCGACATCGCCAAGCTCGCCGAGTCCTGCCTC CTCAAGAACGCCAAGGAGCGCCCCACCATGTCCGAGGTCGTCGACGTCCTCCGCCGCGCC GTCCAGTCGCAGCCCGACCCTCCTCCTCCCCCCGCCGCCGCCGCCGCCGCCTCCGGCAAG GGGAAGAGGGTCGACGTCGCGCCGCAGCCGGCGAGGAGGAGGTGAGGTTGCACTCTGCTG CTATCATCGATCACGGCATGAATGAAGAAAGAAAAGTACAGAAAGAGAGACACAGAGACG AGTTGGTGGATTCTTGGCGTTTTTGTTTTTTGTTTTCCTTTCTATTTTTTAGGCTTATTT AGGATGAGGATAGTAGTATGAGAATACATTTGATTTGATTGGTAGATAACTACTCCCTCC GTCCCATAATCTAAGGGATTTTGAGTTTTTAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)