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Oryza sativa
cluster # 5110 cluster # 5110       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5110#0 length = 2375 sequences # 3  

consensusID : consensus_5110#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2375
fasta sequence
                              [CTCTCCGCCGCCGCCGCCGCCTCGCTTCCTCGTCGCCGGCTCGCCGCGCCGGCGGCAGCATTGTGAGCCTCCCTCCCCTCCCTGTGGCTGTGCCTCCCCCGGTGGCCAGCCGCCGGCCTTTGGCAGTAGTCCCTGCGCGGCGGCGGGCCGGCGGCGAGGCTGGTCTGGACGCGGCGGAGGCGACTCCGTCCTTCCATCTCGGCTTCGAATCGAATTCGAAGAGAGAGAAAAATTTGGGGGGTTTGAGCTGAGCTGACCACCACGTCTAGGTCAGGTCCACCCCCCTGGCTGTTCAAGCTGTGGAGTGAGGAGATGCGTCTACTTTTGCCAAGGAATTAGCGAGGCATTGCCAGGTTTCCGATGGATAATAAGCATCATAAGAATGTTGAGGCAGGGAAAAGCTCATTCCACAGGATGGTTCTTGGGCAGCTTGTTGGGGAATTCGGTTTCGAGCGAGGAGAATGTTCCTTGCAATACTCCGAGAAGCTCGGTTCGCTCGCGGTTCGGTGCTTCGGCTAGCAGAATCGTCGCGTCTACTAGCGGTGCGTCAGTTAGCCCCGGTGAGTATGTCAGAGATCCTGGGTCCATATTGAGCCTGCAGCCTTGGATCTTTAAGAGGAGTGGCTCTCAGAAGAATGAGGAAAAGATGATGCTCGCAAGTGGTAGTAGGGTTGTTGGTGAAGGCAAGAATCTGATGGATTCCTTTCGAGATGGCTCGGCTGTTGAGGTCTCTCCAAGGAGCCCTGGTCTTGGTTCTGGACCTGGGAGAGGTCGAGGTGCTCTTAGGAGCAGACGGTCGCGTAGGCACTTGATTAGGCCACTCGTGCCGATGGAGAATTCCTACATTCCTCAACTTTATAGTGCAGATTTTGAAATTGATGAGTGCACGTTTGGGCCAGCTCCCTCCCCCGCTTCTGCTAGGCCGTTCATCGTAACAGATGGAAGGAGAGTCATTAGTAAGTCACGTTATCAACCAGTGCCTGTACCATTTCATATTGGATTTGAGAAGGAAGGGCGTCGAAACAGCTCAGAAATGGTGGAAAGTGTAATTGGGATTGCTCCTCTACCTGAGCTGAAGAAATCAAAAAGGGAGAGGCAGGGATCACACAATGGAGGGATGGGTTTGTCTGCTTTCGAGAGTAGTAAGCCATCAAAATCAACAGATTTACTTGCTCGACTGCGCATATTCTCTACTGGTGTCAGTATTGGTATTATATCATCCACTTTATCAAACAAGAATGAGCTTGATGCATTAAAGGGTACAGTGAAACGAATGGAGAACTTGATTCAAGATCTGCATGATGAGCTGGAGATGAGAGAGGGTTTAACTGTAAAGGAATTGCCTAATGAAATGTCTGTAAAAATTGATGATGATGAGAGCAAAGCTCATGTAACTGATTCAGAGCCCATGAGCAAAATCGAAGAAGAGCTTGAAGCTGAGCTTGCGAGATTGGAATTAAATATAACTTCAAACTGCTTGAAAGAACAAACATTTGACTTCAGTG---------AGGATCTCATTGGAGATATTGTCCAGGGAGAACTGAAGATCGATACAACCCATTGTGATCTTGCTGACCACAGCAGTGAGAGTGCCCATGGCAGGGATAGTAGAGAAAGCTCCCCAGATTACACACATGATGCAAACTATCCTGTCTCACCTAGGGATCTCAGCCTCCGTCTCCACAAGGTAATCCAACAGAGACTCGAGGAGCGAATCAAGGAACTTGAGACAACACTTGCCCAGAGTGAGATGCAGACGCAGGTGCAAGTGATGGCCACCGAGCAGATCTTGTGTGAAAGAACCTGCTCAGACAGTGATTCTGGTTCTCCCAACCAGGAAAGTCCAGTGTATATACAAGAAACTAACTCCTTGGTAGAACCGTTCTGTCTAAACCTAGCTGGAGACGCGCTAGAGGCTTACGATGAAGCTTATGAGGAATTCATGAGAATTGCGGACTCCCCTTGCACC-ACAAGTACCAACGGGAAGCCTCAAGTTCATGAAGATTACTCGGTGGACCGCAGCTTGATCTGGGGCTTGGAGGATGGCAGTGCAAGGAAGCTGAAAAAAGTGCCCACTTGGGAGCGAATTTTAAAGAGCAGAGAGCCTAACAGAACTCAGGAGAGTGACGGAGATG-ATGAAGATGAATTTGAAGATGATGACCA-GGATAGTAAGATGCTCATCCAACAGATTATAGAGAGAACTAAACAAGGCTCACCTGTACTAATTCATGCTCAAAGA--A--TTGTTTTCTGTGGATGATTAGATTGTTGGACTATATTGAATTAGAATTTAGTGCCAATTGATTGTTTAGAGAAAAAAACATAATATTATTCTTTTCATCATCTTCCGGTGATACAATTTTTCAATGTGTGTTATAAAA]

[+] EMBL AK068258             [CTCTCCGCCGCCGCCGCCGCCTCGCTTCCTCGTCGCCGGCTCGCCGCGCCGGCGGCAGCATTGTGAGCCTCCCTCCCCTCCCTGTGGCTGTGCCTCCCCCGGTGGCCAGCCGCCGGCCTTTGGCAGTAGTCCCTGCGCGGCGGCGGGCCGGCGGCGAGGCTGGTCTGGACGCGGCGGAGGCGACTCCGTCCTTCCATCTCGGCTTCGAATCGAATTCGAAGAGAGAGAAAAATTTGGGGGGTTTGAGCTGAGCTGACCACCACGTCTAGGTCAGGTCCACCCCCCTGGCTGTTCAAGCTGTGGAGTGAGGAGATGCGTCTACTTTTGCCAAGGAATTAGCGAGGCATTGCCAGGTTTCCGATGGATAATAAGCATCATAAGAATGTTGAGGCAGGGAAAAGCTCATTCCACAGGATGGTTCTTGGGCAGCTTGTTGGGGAATTCGGTTTCGAGCGAGGAGAATGTTCCTTGCAATACTCCGAGAAGCTCGGTTCGCTCGCGGTTCGGTGCTTCGGCTAGCAGAATCGTCGCGTCTACTAGCGGTGCGTCAGTTAGCCCCGGTGAGTATGTCAGAGATCCTGGGTCCATATTGAGCCTGCAGCCTTGGATCTTTAAGAGGAGTGGCTCTCAGAAGAATGAGGAAAAGATGATGCTCGCAAGTGGTAGTAGGGTTGTTGGTGAAGGCAAGAATCTGATGGATTCCTTTCGAGATGGCTCGGCTGTTGAGGTCTCTCCAAGGAGCCCTGGTCTTGGTTCTGGACCTGGGAGAGGTCGAGGTGCTCTTAGGAGCAGACGGTCGCGTAGGCACTTGATTAGGCCACTCGTGCCGATGGAGAATTCCTACATTCCTCAACTTTATAGTGCAGATTTTGAAATTGATGAGTGCACGTTTGGGCCAGCTCCCTCCCCCGCTTCTGCTAGGCCGTTCATCGTAACAGATGGAAGGAGAGTCATTAGTAAGTCACGTTATCAACCAGTGCCTGTACCATTTCATATTGGATTTGAGAAGGAAGGGCGTCGAAACAGCTCAGAAATGGTGGAAAGTGTAATTGGGATTGCTCCTCTACCTGAGCTGAAGAAATCAAAAAGGGAGAGGCAGGGATCACACAATGGAGGGATGGGTTTGTCTGCTTTCGAGAGTAGTAAGCCATCAAAATCAACAGATTTACTTGCTCGACTGCGCATATTCTCTACTGGTGTCAGTATTGGTATTATATCATCCACTTTATCAAACAAGAATGAGCTTGATGCATTAAAGGGTACAGTGAAACGAATGGAGAACTTGATTCAAGATCTGCATGATGAGCTGGAGATGAGAGAGGGTTTAACTGTAAAGGAATTGCCTAATGAAATGTCTGTAAAAATTGATGATGATGAGAGCAAAGCTCATGTAACTGATTCAGAGCCCATGAGCAAAATCGAAGAAGAGCTTGAAGCTGAGCTTGCGAGATTGGAATTAAATATAACTTCAAACTGCTTGAAAGAACAAACATTTGACTTCAGTG         AGGATCTCATTGGAGATATTGTCCAGGGAGAACTGAAGATCGATACAACCCATTGTGATCTTGCTGACCACAGCAGTGAGAGTGCCCATGGCAGGGATAGTAGAGAAAGCTCCCCAGATTACACACATGATGCAAACTATCCTGTCTCACCTAGGGATCTCAGCCTCCGTCTCCACAAGGTAATCCAACAGAGACTCGAGGAGCGAATCAAGGAACTTGAGACAACACTTGCCCAGAGTGAGATGCAGACGCAGGTGCAAGTGATGGCCACCGAGCAGATCTTGTGTGAAAGAACCTGCTCAGACAGTGATTCTGGTTCTCCCAACCAGGAAAGTCCAGTGTATATACAAGAAACTAACTCCTTGGTAGAACCGTTCTGTCTAAACCTAGCTGGAGACGCGCTAGAGGCTTACGATGAAGCTTATGAGGAATTCATGAGAATTGCGGACTCCCCTTGCACC ACAAGTACCAACGGGAAGCCTCAAGTTCATGAAGATTACTCGGTGGACCGCAGCTTGATCTGGGGCTTGGAGGATGGCAGTGCAAGGAAGCTGAAAAAAGTGCCCACTTGGGAGCGAATTTTAAAGAGCAGAGAGCCTAACAGAACTCAGGAGAGTGACGGAGATG ATGAAGATGAATTTGAAGATGATGACCA GGATAGTAAGATGCTCATCCAACAGATTATAGAGAGAACTAAACAAGGCTCACCTGTACTAATTCATGCTCAAAGA  A  TTGTTTTCTGTGGATGATTAGATTGTTGGACTATATTGAATTAGAATTTAGTGCCAATTGATTGTTTAGAGAAAAAAACATAATATTATTCTTTTCATCA                                      ]
[+] EMBL AK058735             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGGGCCAGCTCCCTCCCCCGCTTCTGCTAGGCCGTTCATCGTAACAGATGGAAGGAGAGTCATTAGTAAGTCACGTTATCAACCAGTGCCTGTACCATTTCATATTGGATTTGAGAAGGAAGGGCGTCGAAACAGCTCAGAAATGGTGGAAAGTGTAATTGGGATTGCTCCTCTACCTGAGCTGAAGAAATCAAAAAGGGAGAGGCAGGGATCACACAATGGAGGGATGGGTTTGTCTGCTTTCGAGAGTAGTAAGCCATCAAAATCAACAGATTTACTTGCTCGACTGCGCATATTCTCTACTGGTGTCAGTATTGGTATTATATCATCCACTTTATCAAACAAGAATGAGCTTGATGCATTAAAGGGTACAGTGAAACGAATGGAGAACTTGATTCAAGATCTGCATGATGAGCTGGAGATGAGAGAGGGTTTAACTGTAAAGGAATTGCCTAATGAAATGTCTGTAAAAATTGATGATGATGAGAGCAAAGCTCATGTAACTGATTCAGAGCCCATGAGCAAAATCGAAGAAGAGCTTGAAGCTGAGCTTGCGAGATTGGAATTAAATATAACTTCAAACTGCTTGAAAGAACAAACATTTGACTTCAGTGAGGTTGAACAGGATCTCATTGGAGATATTGTCCAGGGAGAACTGAAGATCGATACAACCCATTGTGATCTTGCTGACCACAGCAGTGAGAGTGCCCATGGCAGGGATAGTAGAGAAAGCTCCCCAGATTACACACATGATGCAAACTATCCTGTCTCACCTAGGGATCTCAGCCTCCGTCTCCACAAGGTAATCCAACAGAGACTCGAGGAGCGAATCAAGGAACTTGAGACAACACTTGCCCAGAGTGAGATGCAGACGCAGGTGCAAGTGATGGCCACCGAGCAGATCTTGTGTGAAAGAACCTGCTCAGACAGTGATTCTGGTTCTCCCAACCAGGAAAGTCCAGTGTATATACAAGAAACTAACTCCTTGGTAGAACCGTTCTGTCTAAACCTAGCTGGAGACGCGCTAGAGGCTTACGATGAAGCTTATGAGGAATTCATGAGAATTGCGGACTCCCCTTGCACC ACAAGTACCAACGGGAAGCCTCAAGTTCATGAAGATTACTCGGTGGACCGCGGCTTGATCTGGGGCTTGGAGGATGGCAGTGCAAGGAAGCTGAAAAAAGTGCCCACTTGGGAGCGAATTTTAAAGAGCAGAGAGCCTAACAGAACTCAGGAGAGTGACGGAGATG ATGAAGATGAATTTGAAGATGATGACCA GGATAGTAAGATGCTCATCCAACAGATTATAGAGAGAACTAAACAAGGCTCACCTGTACTAATTCATGCTCAAAGA  ATGTTGTTTTCTGTGGATGATTAGATTGTTGGACTATATTGAATTAGAATTTAGTGCCAATTGATTGTTTAGAGAAAAAAACATAATATTATTCTTTTCATCATCTTCCGGTGATACAATTTTTCAATGTGTGT       ]
[+] EMBL BM421349             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATGAAGCTTATGAGGAATTCATGAGAATT CGGACTCCCCTTGCACCAACAAGTACCAACGGGAAGCCTCAAGTTCATGAAGATTACTC GTGGACCACAGCTTGATCTGGGGCTTGGAGGATGCAAGTGCAAGGAAGCTGAAAAAAGTGCCCACTTGGGAGCGAATTTTAAAGA CAGAGAGCCTAACAGAACTCAGGAGAGTGACGGAGATGTATGAAGATGAATTTGAAGATGATGACCACGGATAGTAAGATGCTCATCC CCAGATTATAGAGAGAACTAAACAAGGCTCACCTGTACTAATTCATGCTCAAAGAATA  TTGTTTTCTGTGGATGATTAGATTGTTGGACTATATTGAATTAGAATTTAGT CC ATTGATTGTTTAGAGAAAAAAACATAATATTATTCTTTTCATCATCTTCCGGTGATAC ATTTTCCAACGTGTGTTATAAAA]


>consensus_5110#0 CTCTCCGCCGCCGCCGCCGCCTCGCTTCCTCGTCGCCGGCTCGCCGCGCCGGCGGCAGCA TTGTGAGCCTCCCTCCCCTCCCTGTGGCTGTGCCTCCCCCGGTGGCCAGCCGCCGGCCTT TGGCAGTAGTCCCTGCGCGGCGGCGGGCCGGCGGCGAGGCTGGTCTGGACGCGGCGGAGG CGACTCCGTCCTTCCATCTCGGCTTCGAATCGAATTCGAAGAGAGAGAAAAATTTGGGGG GTTTGAGCTGAGCTGACCACCACGTCTAGGTCAGGTCCACCCCCCTGGCTGTTCAAGCTG TGGAGTGAGGAGATGCGTCTACTTTTGCCAAGGAATTAGCGAGGCATTGCCAGGTTTCCG ATGGATAATAAGCATCATAAGAATGTTGAGGCAGGGAAAAGCTCATTCCACAGGATGGTT CTTGGGCAGCTTGTTGGGGAATTCGGTTTCGAGCGAGGAGAATGTTCCTTGCAATACTCC GAGAAGCTCGGTTCGCTCGCGGTTCGGTGCTTCGGCTAGCAGAATCGTCGCGTCTACTAG CGGTGCGTCAGTTAGCCCCGGTGAGTATGTCAGAGATCCTGGGTCCATATTGAGCCTGCA GCCTTGGATCTTTAAGAGGAGTGGCTCTCAGAAGAATGAGGAAAAGATGATGCTCGCAAG TGGTAGTAGGGTTGTTGGTGAAGGCAAGAATCTGATGGATTCCTTTCGAGATGGCTCGGC TGTTGAGGTCTCTCCAAGGAGCCCTGGTCTTGGTTCTGGACCTGGGAGAGGTCGAGGTGC TCTTAGGAGCAGACGGTCGCGTAGGCACTTGATTAGGCCACTCGTGCCGATGGAGAATTC CTACATTCCTCAACTTTATAGTGCAGATTTTGAAATTGATGAGTGCACGTTTGGGCCAGC TCCCTCCCCCGCTTCTGCTAGGCCGTTCATCGTAACAGATGGAAGGAGAGTCATTAGTAA GTCACGTTATCAACCAGTGCCTGTACCATTTCATATTGGATTTGAGAAGGAAGGGCGTCG AAACAGCTCAGAAATGGTGGAAAGTGTAATTGGGATTGCTCCTCTACCTGAGCTGAAGAA ATCAAAAAGGGAGAGGCAGGGATCACACAATGGAGGGATGGGTTTGTCTGCTTTCGAGAG TAGTAAGCCATCAAAATCAACAGATTTACTTGCTCGACTGCGCATATTCTCTACTGGTGT CAGTATTGGTATTATATCATCCACTTTATCAAACAAGAATGAGCTTGATGCATTAAAGGG TACAGTGAAACGAATGGAGAACTTGATTCAAGATCTGCATGATGAGCTGGAGATGAGAGA GGGTTTAACTGTAAAGGAATTGCCTAATGAAATGTCTGTAAAAATTGATGATGATGAGAG CAAAGCTCATGTAACTGATTCAGAGCCCATGAGCAAAATCGAAGAAGAGCTTGAAGCTGA GCTTGCGAGATTGGAATTAAATATAACTTCAAACTGCTTGAAAGAACAAACATTTGACTT CAGTGAGGATCTCATTGGAGATATTGTCCAGGGAGAACTGAAGATCGATACAACCCATTG TGATCTTGCTGACCACAGCAGTGAGAGTGCCCATGGCAGGGATAGTAGAGAAAGCTCCCC AGATTACACACATGATGCAAACTATCCTGTCTCACCTAGGGATCTCAGCCTCCGTCTCCA CAAGGTAATCCAACAGAGACTCGAGGAGCGAATCAAGGAACTTGAGACAACACTTGCCCA GAGTGAGATGCAGACGCAGGTGCAAGTGATGGCCACCGAGCAGATCTTGTGTGAAAGAAC CTGCTCAGACAGTGATTCTGGTTCTCCCAACCAGGAAAGTCCAGTGTATATACAAGAAAC TAACTCCTTGGTAGAACCGTTCTGTCTAAACCTAGCTGGAGACGCGCTAGAGGCTTACGA TGAAGCTTATGAGGAATTCATGAGAATTGCGGACTCCCCTTGCACCACAAGTACCAACGG GAAGCCTCAAGTTCATGAAGATTACTCGGTGGACCGCAGCTTGATCTGGGGCTTGGAGGA TGGCAGTGCAAGGAAGCTGAAAAAAGTGCCCACTTGGGAGCGAATTTTAAAGAGCAGAGA GCCTAACAGAACTCAGGAGAGTGACGGAGATGATGAAGATGAATTTGAAGATGATGACCA GGATAGTAAGATGCTCATCCAACAGATTATAGAGAGAACTAAACAAGGCTCACCTGTACT AATTCATGCTCAAAGAATTGTTTTCTGTGGATGATTAGATTGTTGGACTATATTGAATTA GAATTTAGTGCCAATTGATTGTTTAGAGAAAAAAACATAATATTATTCTTTTCATCATCT TCCGGTGATACAATTTTTCAATGTGTGTTATAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)