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Oryza sativa
cluster # 5114 cluster # 5114       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5114#0 length = 1401 sequences # 2  
consensus_5114#1 length = 260 sequences # 1  

consensusID : consensus_5114#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1401
fasta sequence
                              [TTTCGACCGGCTTCTCCTCGGTGTACTCCCGATGGAGAGAAATCAGTATCTGCCTCTTCACAGAGAACAGGCAATGCTCTGTTTGACTTGAATGTTTCTGAAAGTGACAATGCTACTGCTGGTGAACCACTTTCAGCAGCCATCCTTCCGCTTTCTTCTGACATAGTGCGAAAGGATGCCTCTGCAACTGTTGGCCTGAATAGCCTTGAACTTGACCTTAATTGTCCATGTGACGATGAGGAAGCTGCAATCACCACAAGTAATGTACCATCATTTTGGAATCGACAACAATGTAATGGCGATTGGAGTCACCCTTCTTCCTCTTCATCTTCAAGGCAACCTGCAGTAAGGAACTTTGACTTGAATGACAACACACCAATCGTGGATGGCTTTTTACGAGGTGCAGATGAGTCCTCTGTCAAGACTTCTGGGAGGGATGTGTCAGACCATTCTGCAGTGACAATTCTGGGCAAGAGAATAGTTCTTGGACAGAAGGAACATAGCCATCAAAATGAGCATAACTTTCTTGGGCCAAGTGTGGAATCAAGAGATCCTGCAAGGTCTATGCAATCTTACGGGCATACACCCCCTGATTATAGTGTTGTCAGCTATTCGTCTCATTCTGCTTTGTCTTTCCCGTCACCTTTCTATGCACCAGGGACTGTTCCTTATATGGTTGATGCAAAGGGCACGCCAGTTATACCTCCATTGCCAGGTTTCGGTGTACCAACGGTGCCAAACTTAGGAGTGGGCACATCTCATCCATCTCTCGGCAGCAGAGCAATCCCACCCTCTAGTGAATTGAGCTTTTTTCATCCCAGCATGGATCTCAACTATGGAAGGTCAT-ATGAAGGTGCACGTAGGGAAGGTGCAAGCTATTGGCCTGTGTCTTTCCAAGGTCAGACCATGTTT-GTGGACGAGCGCATGGGTAACATGTCACAGGGTGGCAGCTCTGGGGTGCCAGTATTGAAGCGAAAAGAGCCAGACTTAGGTTGGGATCTGTACCCACGTCGCTAGGTATGATGTTTGTCGCAATTGTAATCGATT-TTTGTTGTTTTATTTATTTGGTTTGTTCAATGTACCGCTTGCTGTGGTACCTTGGACATTCTGGAGTATTTTTGGCACCTAAAAATAGGTCCCAGTTCTATTAGGTTGGAAGACATACCACAGAGAACTGAATAAGGCCAGCTACTAGTTAGATTTCAGAGATGTTGACTTGCCATGGACATTGTTGGCAGCTGAATACCTTGTG-CAGATTTGGTTCTTTGTGAACGTAGCTTCTTTTAGTAGTCTTCATATAGCCAAACCACTGTACGGAAAGCTGAATTTATGTATATCATTGTAGAACTTATAATTAATAGATGAAATGCTTCCAGTTTGTCCAAAAAAAAAAAAAAAAAA]

[+] EMBL AK106231             [TTTCGACCGGCTTCTCCTCGGTGTACTCCCGATGGAGAGAAATCAGTATCTGCCTCTTCACAGAGAACAGGCAATGCTCTGTTTGACTTGAATGTTTCTGAAAGTGACAATGCTACTGCTGGTGAACCACTTTCAGCAGCCATCCTTCCGCTTTCTTCTGACATAGTGCGAAAGGATGCCTCTGCAACTGTTGGCCTGAATAGCCTTGAACTTGACCTTAATTGTCCATGTGACGATGAGGAAGCTGCAATCACCACAAGTAATGTACCATCATTTTGGAATCGACAACAATGTAATGGCGATTGGAGTCACCCTTCTTCCTCTTCATCTTCAAGGCAACCTGCAGTAAGGAACTTTGACTTGAATGACAACACACCAATCGTGGATGGCTTTTTACGAGGTGCAGATGAGTCCTCTGTCAAGACTTCTGGGAGGGATGTGTCAGACCATTCTGCAGTGACAATTCTGGGCAAGAGAATAGTTCTTGGACAGAAGGAACATAGCCATCAAAATGAGCATAACTTTCTTGGGCCAAGTGTGGAATCAAGAGATCCTGCAAGGTCTATGCAATCTTACGGGCATACACCCCCTGATTATAGTGTTGTCAGCTATTCGTCTCATTCTGCTTTGTCTTTCCCGTCACCTTTCTATGCACCAGGGACTGTTCCTTATATGGTTGATGCAAAGGGCACGCCAGTTATACCTCCATTGCCAGGTTTCGGTGTACCAACGGTGCCAAACTTAGGAGTGGGCACATCTCATCCATCTCTCGGCAGCAGAGCAATCCCACCCTCTAGTGAATTGAGCTTTTTTCATCCCAGCATGGATCTCAACTATGGAAGGTCAT ATGAAGGTGCACGTAGGGAAGGTGCAAGCTATTGGCCTGTGTCTTTCCAAGGTCAGACCATGTTT GTGGACGAGCGCATGGGTAACATGTCACAGGGTGGCAGCTCTGGGGTGCCAGTATTGAAGCGAAAAGAGCCAGACTTAGGTTGGGATCTGTACCCACGTCGCTAGGTATGATGTTTGTCGCAATTGTAATCGATT TTTGTTGTTTTATTTATTTGGTTTGTTCAATGTACCGCTTGCTGTGGTACCTTGGACATTCTGGAGTATTTTTGGCACCTAAAAATAGGTCCCAGTTCTATTAGGTTGGAAGACATACCACAGAGAACTGAATAAGGCCAGCTACTAGTTAGATTTCAGAGATGTTGACTTGCCATGGACATTGTTGGCAGCTGAATACCTTGTG CAGATTTGGTTCTTTGTGAACGTAGCTTCTTTTAGTAGTCTTCATATAGCCAAACCACTGTACGGAAAGCTGAATTTATGTATATCATTGTAGAACTTATAATTAATAGATGAAATGCTTCCAGTTTGTCCAAAAAAAAAAAAAAAAAA]
[+] EMBL BI805664             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGTCATNANGAAGGTGCACGTAGGGAAGGTGCAAGCTATTGGCCTGTGTCTTTCCAAGGTCAGACCATGTTTGGTGGACGAGCGCATGGGTAACATGTCACA GGTTGCAGCTCTGGGGTGCCAGTATTGAAGCGAAAAGAGCCAGACTTAGGTTGGGATCTGTACCCACGTCGCTAGGTATGATGTTTGTCGCAATTGTAATCGATTGTTTGTTGTTTTATTTATTTGGTTTGTTCAATGTACCGCTTGCTGTGGTACCTTGGACATTCTGGAGTATTTTTGGCACCTAAAAATAGGTCCCAGTTCTATTAGGTTGGAAGACATACCACAGAG ACTGAATAAGGCCAGCTACTAGTTAGATTTCAGAGATGTTGACTTGCCATGGACATTGTTGGCACCTGAATACCTTGTGCCAGATTTGGTTCTTTGTGAACGTAGCTTCTTTTAGTAGTCTTCATATA CC AACC CTGTACGGAAAGCTGAATTTATGTATATCATTGTAGAACTTATAATTAATAGATGAAATGCTaaaaa                         ]


>consensus_5114#0 TTTCGACCGGCTTCTCCTCGGTGTACTCCCGATGGAGAGAAATCAGTATCTGCCTCTTCA CAGAGAACAGGCAATGCTCTGTTTGACTTGAATGTTTCTGAAAGTGACAATGCTACTGCT GGTGAACCACTTTCAGCAGCCATCCTTCCGCTTTCTTCTGACATAGTGCGAAAGGATGCC TCTGCAACTGTTGGCCTGAATAGCCTTGAACTTGACCTTAATTGTCCATGTGACGATGAG GAAGCTGCAATCACCACAAGTAATGTACCATCATTTTGGAATCGACAACAATGTAATGGC GATTGGAGTCACCCTTCTTCCTCTTCATCTTCAAGGCAACCTGCAGTAAGGAACTTTGAC TTGAATGACAACACACCAATCGTGGATGGCTTTTTACGAGGTGCAGATGAGTCCTCTGTC AAGACTTCTGGGAGGGATGTGTCAGACCATTCTGCAGTGACAATTCTGGGCAAGAGAATA GTTCTTGGACAGAAGGAACATAGCCATCAAAATGAGCATAACTTTCTTGGGCCAAGTGTG GAATCAAGAGATCCTGCAAGGTCTATGCAATCTTACGGGCATACACCCCCTGATTATAGT GTTGTCAGCTATTCGTCTCATTCTGCTTTGTCTTTCCCGTCACCTTTCTATGCACCAGGG ACTGTTCCTTATATGGTTGATGCAAAGGGCACGCCAGTTATACCTCCATTGCCAGGTTTC GGTGTACCAACGGTGCCAAACTTAGGAGTGGGCACATCTCATCCATCTCTCGGCAGCAGA GCAATCCCACCCTCTAGTGAATTGAGCTTTTTTCATCCCAGCATGGATCTCAACTATGGA AGGTCATATGAAGGTGCACGTAGGGAAGGTGCAAGCTATTGGCCTGTGTCTTTCCAAGGT CAGACCATGTTTGTGGACGAGCGCATGGGTAACATGTCACAGGGTGGCAGCTCTGGGGTG CCAGTATTGAAGCGAAAAGAGCCAGACTTAGGTTGGGATCTGTACCCACGTCGCTAGGTA TGATGTTTGTCGCAATTGTAATCGATTTTTGTTGTTTTATTTATTTGGTTTGTTCAATGT ACCGCTTGCTGTGGTACCTTGGACATTCTGGAGTATTTTTGGCACCTAAAAATAGGTCCC AGTTCTATTAGGTTGGAAGACATACCACAGAGAACTGAATAAGGCCAGCTACTAGTTAGA TTTCAGAGATGTTGACTTGCCATGGACATTGTTGGCAGCTGAATACCTTGTGCAGATTTG GTTCTTTGTGAACGTAGCTTCTTTTAGTAGTCTTCATATAGCCAAACCACTGTACGGAAA GCTGAATTTATGTATATCATTGTAGAACTTATAATTAATAGATGAAATGCTTCCAGTTTG TCCAAAAAAAAAAAAAAAAAA



consensusID : consensus_5114#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence
                              [CCAACTCAGGTGGGATCTGTACCCACCTCGCTAGGTTGGGAAGACATAACCCCCGAGAACTGAATAAGGCCCGCTACTGAGTTAGATTTCAGAGATAGTTGGACTTGCCCTGGACACTTGTTGGCAGCTGGAATAACCTTGTGCAGATTTGGTTTCTGTTGGTGAACGTAGCTTCTTTTAGTAGTCGTTCATATAGCCCAACCCCTGTACGGAAAGCTGAATTTATGTATATCCTTGTAGAACTTATAATTGAATAGATG]

[+] EMBL BI809553             [CCAACTCAGGTGGGATCTGTACCCACCTCGCTAGGTTGGGAAGACATAACCCCCGAGAACTGAATAAGGCCCGCTACTGAGTTAGATTTCAGAGATAGTTGGACTTGCCCTGGACACTTGTTGGCAGCTGGAATAACCTTGTGCAGATTTGGTTTCTGTTGGTGAACGTAGCTTCTTTTAGTAGTCGTTCATATAGCCCAACCCCTGTACGGAAAGCTGAATTTATGTATATCCTTGTAGAACTTATAATTGAATAGATG]


>consensus_5114#1 CCAACTCAGGTGGGATCTGTACCCACCTCGCTAGGTTGGGAAGACATAACCCCCGAGAAC TGAATAAGGCCCGCTACTGAGTTAGATTTCAGAGATAGTTGGACTTGCCCTGGACACTTG TTGGCAGCTGGAATAACCTTGTGCAGATTTGGTTTCTGTTGGTGAACGTAGCTTCTTTTA GTAGTCGTTCATATAGCCCAACCCCTGTACGGAAAGCTGAATTTATGTATATCCTTGTAG AACTTATAATTGAATAGATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5114#0      TTTCGACCGGCTTCTCCTCGGTGTACTCCCGATGGAGAGAAATCAGTATCTGCCTCTTCA 60
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      CAGAGAACAGGCAATGCTCTGTTTGACTTGAATGTTTCTGAAAGTGACAATGCTACTGCT 120
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      GGTGAACCACTTTCAGCAGCCATCCTTCCGCTTTCTTCTGACATAGTGCGAAAGGATGCC 180
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      TCTGCAACTGTTGGCCTGAATAGCCTTGAACTTGACCTTAATTGTCCATGTGACGATGAG 240
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      GAAGCTGCAATCACCACAAGTAATGTACCATCATTTTGGAATCGACAACAATGTAATGGC 300
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      GATTGGAGTCACCCTTCTTCCTCTTCATCTTCAAGGCAACCTGCAGTAAGGAACTTTGAC 360
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      TTGAATGACAACACACCAATCGTGGATGGCTTTTTACGAGGTGCAGATGAGTCCTCTGTC 420
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      AAGACTTCTGGGAGGGATGTGTCAGACCATTCTGCAGTGACAATTCTGGGCAAGAGAATA 480
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      GTTCTTGGACAGAAGGAACATAGCCATCAAAATGAGCATAACTTTCTTGGGCCAAGTGTG 540
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      GAATCAAGAGATCCTGCAAGGTCTATGCAATCTTACGGGCATACACCCCCTGATTATAGT 600
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      GTTGTCAGCTATTCGTCTCATTCTGCTTTGTCTTTCCCGTCACCTTTCTATGCACCAGGG 660
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      ACTGTTCCTTATATGGTTGATGCAAAGGGCACGCCAGTTATACCTCCATTGCCAGGTTTC 720
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      GGTGTACCAACGGTGCCAAACTTAGGAGTGGGCACATCTCATCCATCTCTCGGCAGCAGA 780
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      GCAATCCCACCCTCTAGTGAATTGAGCTTTTTTCATCCCAGCATGGATCTCAACTATGGA 840
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      AGGTCATATGAAGGTGCACGTAGGGAAGGTGCAAGCTATTGGCCTGTGTCTTTCCAAGGT 900
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      CAGACCATGTTTGTGGACGAGCGCATGGGTAACATGTCACAGGGTGGCAGCTCTGGGGTG 960
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      CCAGTATTGAAGCGAAAAGAGCCAGACTTAGGTTGGGATCTGTACCCACGTCGCTAGGTA 1020
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      TGATGTTTGTCGCAATTGTAATCGATTTTTGTTGTTTTATTTATTTGGTTTGTTCAATGT 1080
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      ACCGCTTGCTGTGGTACCTTGGACATTCTGGAGTATTTTTGGCACCTAAAAATAGGTCCC 1140
consensus_5114#1      ------------------------------------CCAACTCAGGTGGGATCTGTACCC 24
                                                                **  *   *   *  ***

consensus_5114#0      AGTTCTATTAGGTTGGAAGACATA-CCACAGAGAACTGAATAAGGCCAGCTACT-AGTTA 1198
consensus_5114#1      ACCTCGCTAGGTTGGGAAGACATAACCCCCGAGAACTGAATAAGGCCCGCTACTGAGTTA 84
                      *  **  *  * * ********** ** * ***************** ****** *****

consensus_5114#0      GATTTCAGAGATGTT--GACTTGCCATGGACA-TTGTTGGCAGCTGAAT--ACCTTGTGC 1253
consensus_5114#1      GATTTCAGAGATAGTTGGACTTGCCCTGGACACTTGTTGGCAGCTGGAATAACCTTGTGC 144
                      ************  *  ******** ****** ************* *   *********

consensus_5114#0      AGATTTGGTTC---TTTGTGAACGTAGCTTCTTTTAGTAGTC-TTCATATAGCCAAACCA 1309
consensus_5114#1      AGATTTGGTTTCTGTTGGTGAACGTAGCTTCTTTTAGTAGTCGTTCATATAGCCCAACCC 204
                      **********    ** ************************* *********** **** 

consensus_5114#0      CTGTACGGAAAGCTGAATTTATGTATATCATTGTAGAACTTATAATT-AATAGATGAAAT 1368
consensus_5114#1      CTGTACGGAAAGCTGAATTTATGTATATCCTTGTAGAACTTATAATTGAATAGATG---- 260
                      ***************************** ***************** ********    

consensus_5114#0      GCTTCCAGTTTGTCCAAAAAAAAAAAAAAAAAA 1401
consensus_5114#1      ---------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)