These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1401 fasta sequence [TTTCGACCGGCTTCTCCTCGGTGTACTCCCGATGGAGAGAAATCAGTATCTGCCTCTTCACAGAGAACAGGCAATGCTCTGTTTGACTTGAATGTTTCTGAAAGTGACAATGCTACTGCTGGTGAACCACTTTCAGCAGCCATCCTTCCGCTTTCTTCTGACATAGTGCGAAAGGATGCCTCTGCAACTGTTGGCCTGAATAGCCTTGAACTTGACCTTAATTGTCCATGTGACGATGAGGAAGCTGCAATCACCACAAGTAATGTACCATCATTTTGGAATCGACAACAATGTAATGGCGATTGGAGTCACCCTTCTTCCTCTTCATCTTCAAGGCAACCTGCAGTAAGGAACTTTGACTTGAATGACAACACACCAATCGTGGATGGCTTTTTACGAGGTGCAGATGAGTCCTCTGTCAAGACTTCTGGGAGGGATGTGTCAGACCATTCTGCAGTGACAATTCTGGGCAAGAGAATAGTTCTTGGACAGAAGGAACATAGCCATCAAAATGAGCATAACTTTCTTGGGCCAAGTGTGGAATCAAGAGATCCTGCAAGGTCTATGCAATCTTACGGGCATACACCCCCTGATTATAGTGTTGTCAGCTATTCGTCTCATTCTGCTTTGTCTTTCCCGTCACCTTTCTATGCACCAGGGACTGTTCCTTATATGGTTGATGCAAAGGGCACGCCAGTTATACCTCCATTGCCAGGTTTCGGTGTACCAACGGTGCCAAACTTAGGAGTGGGCACATCTCATCCATCTCTCGGCAGCAGAGCAATCCCACCCTCTAGTGAATTGAGCTTTTTTCATCCCAGCATGGATCTCAACTATGGAAGGTCAT-ATGAAGGTGCACGTAGGGAAGGTGCAAGCTATTGGCCTGTGTCTTTCCAAGGTCAGACCATGTTT-GTGGACGAGCGCATGGGTAACATGTCACAGGGTGGCAGCTCTGGGGTGCCAGTATTGAAGCGAAAAGAGCCAGACTTAGGTTGGGATCTGTACCCACGTCGCTAGGTATGATGTTTGTCGCAATTGTAATCGATT-TTTGTTGTTTTATTTATTTGGTTTGTTCAATGTACCGCTTGCTGTGGTACCTTGGACATTCTGGAGTATTTTTGGCACCTAAAAATAGGTCCCAGTTCTATTAGGTTGGAAGACATACCACAGAGAACTGAATAAGGCCAGCTACTAGTTAGATTTCAGAGATGTTGACTTGCCATGGACATTGTTGGCAGCTGAATACCTTGTG-CAGATTTGGTTCTTTGTGAACGTAGCTTCTTTTAGTAGTCTTCATATAGCCAAACCACTGTACGGAAAGCTGAATTTATGTATATCATTGTAGAACTTATAATTAATAGATGAAATGCTTCCAGTTTGTCCAAAAAAAAAAAAAAAAAA] [+] EMBL AK106231 [TTTCGACCGGCTTCTCCTCGGTGTACTCCCGATGGAGAGAAATCAGTATCTGCCTCTTCACAGAGAACAGGCAATGCTCTGTTTGACTTGAATGTTTCTGAAAGTGACAATGCTACTGCTGGTGAACCACTTTCAGCAGCCATCCTTCCGCTTTCTTCTGACATAGTGCGAAAGGATGCCTCTGCAACTGTTGGCCTGAATAGCCTTGAACTTGACCTTAATTGTCCATGTGACGATGAGGAAGCTGCAATCACCACAAGTAATGTACCATCATTTTGGAATCGACAACAATGTAATGGCGATTGGAGTCACCCTTCTTCCTCTTCATCTTCAAGGCAACCTGCAGTAAGGAACTTTGACTTGAATGACAACACACCAATCGTGGATGGCTTTTTACGAGGTGCAGATGAGTCCTCTGTCAAGACTTCTGGGAGGGATGTGTCAGACCATTCTGCAGTGACAATTCTGGGCAAGAGAATAGTTCTTGGACAGAAGGAACATAGCCATCAAAATGAGCATAACTTTCTTGGGCCAAGTGTGGAATCAAGAGATCCTGCAAGGTCTATGCAATCTTACGGGCATACACCCCCTGATTATAGTGTTGTCAGCTATTCGTCTCATTCTGCTTTGTCTTTCCCGTCACCTTTCTATGCACCAGGGACTGTTCCTTATATGGTTGATGCAAAGGGCACGCCAGTTATACCTCCATTGCCAGGTTTCGGTGTACCAACGGTGCCAAACTTAGGAGTGGGCACATCTCATCCATCTCTCGGCAGCAGAGCAATCCCACCCTCTAGTGAATTGAGCTTTTTTCATCCCAGCATGGATCTCAACTATGGAAGGTCAT ATGAAGGTGCACGTAGGGAAGGTGCAAGCTATTGGCCTGTGTCTTTCCAAGGTCAGACCATGTTT GTGGACGAGCGCATGGGTAACATGTCACAGGGTGGCAGCTCTGGGGTGCCAGTATTGAAGCGAAAAGAGCCAGACTTAGGTTGGGATCTGTACCCACGTCGCTAGGTATGATGTTTGTCGCAATTGTAATCGATT TTTGTTGTTTTATTTATTTGGTTTGTTCAATGTACCGCTTGCTGTGGTACCTTGGACATTCTGGAGTATTTTTGGCACCTAAAAATAGGTCCCAGTTCTATTAGGTTGGAAGACATACCACAGAGAACTGAATAAGGCCAGCTACTAGTTAGATTTCAGAGATGTTGACTTGCCATGGACATTGTTGGCAGCTGAATACCTTGTG CAGATTTGGTTCTTTGTGAACGTAGCTTCTTTTAGTAGTCTTCATATAGCCAAACCACTGTACGGAAAGCTGAATTTATGTATATCATTGTAGAACTTATAATTAATAGATGAAATGCTTCCAGTTTGTCCAAAAAAAAAAAAAAAAAA] [+] EMBL BI805664 [ AGGTCATNANGAAGGTGCACGTAGGGAAGGTGCAAGCTATTGGCCTGTGTCTTTCCAAGGTCAGACCATGTTTGGTGGACGAGCGCATGGGTAACATGTCACA GGTTGCAGCTCTGGGGTGCCAGTATTGAAGCGAAAAGAGCCAGACTTAGGTTGGGATCTGTACCCACGTCGCTAGGTATGATGTTTGTCGCAATTGTAATCGATTGTTTGTTGTTTTATTTATTTGGTTTGTTCAATGTACCGCTTGCTGTGGTACCTTGGACATTCTGGAGTATTTTTGGCACCTAAAAATAGGTCCCAGTTCTATTAGGTTGGAAGACATACCACAGAG ACTGAATAAGGCCAGCTACTAGTTAGATTTCAGAGATGTTGACTTGCCATGGACATTGTTGGCACCTGAATACCTTGTGCCAGATTTGGTTCTTTGTGAACGTAGCTTCTTTTAGTAGTCTTCATATA CC AACC CTGTACGGAAAGCTGAATTTATGTATATCATTGTAGAACTTATAATTAATAGATGAAATGCTaaaaa ] consensusID : consensus_5114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence [CCAACTCAGGTGGGATCTGTACCCACCTCGCTAGGTTGGGAAGACATAACCCCCGAGAACTGAATAAGGCCCGCTACTGAGTTAGATTTCAGAGATAGTTGGACTTGCCCTGGACACTTGTTGGCAGCTGGAATAACCTTGTGCAGATTTGGTTTCTGTTGGTGAACGTAGCTTCTTTTAGTAGTCGTTCATATAGCCCAACCCCTGTACGGAAAGCTGAATTTATGTATATCCTTGTAGAACTTATAATTGAATAGATG] [+] EMBL BI809553 [CCAACTCAGGTGGGATCTGTACCCACCTCGCTAGGTTGGGAAGACATAACCCCCGAGAACTGAATAAGGCCCGCTACTGAGTTAGATTTCAGAGATAGTTGGACTTGCCCTGGACACTTGTTGGCAGCTGGAATAACCTTGTGCAGATTTGGTTTCTGTTGGTGAACGTAGCTTCTTTTAGTAGTCGTTCATATAGCCCAACCCCTGTACGGAAAGCTGAATTTATGTATATCCTTGTAGAACTTATAATTGAATAGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5114#0 TTTCGACCGGCTTCTCCTCGGTGTACTCCCGATGGAGAGAAATCAGTATCTGCCTCTTCA 60 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 CAGAGAACAGGCAATGCTCTGTTTGACTTGAATGTTTCTGAAAGTGACAATGCTACTGCT 120 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 GGTGAACCACTTTCAGCAGCCATCCTTCCGCTTTCTTCTGACATAGTGCGAAAGGATGCC 180 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 TCTGCAACTGTTGGCCTGAATAGCCTTGAACTTGACCTTAATTGTCCATGTGACGATGAG 240 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 GAAGCTGCAATCACCACAAGTAATGTACCATCATTTTGGAATCGACAACAATGTAATGGC 300 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 GATTGGAGTCACCCTTCTTCCTCTTCATCTTCAAGGCAACCTGCAGTAAGGAACTTTGAC 360 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 TTGAATGACAACACACCAATCGTGGATGGCTTTTTACGAGGTGCAGATGAGTCCTCTGTC 420 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 AAGACTTCTGGGAGGGATGTGTCAGACCATTCTGCAGTGACAATTCTGGGCAAGAGAATA 480 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 GTTCTTGGACAGAAGGAACATAGCCATCAAAATGAGCATAACTTTCTTGGGCCAAGTGTG 540 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 GAATCAAGAGATCCTGCAAGGTCTATGCAATCTTACGGGCATACACCCCCTGATTATAGT 600 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 GTTGTCAGCTATTCGTCTCATTCTGCTTTGTCTTTCCCGTCACCTTTCTATGCACCAGGG 660 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 ACTGTTCCTTATATGGTTGATGCAAAGGGCACGCCAGTTATACCTCCATTGCCAGGTTTC 720 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 GGTGTACCAACGGTGCCAAACTTAGGAGTGGGCACATCTCATCCATCTCTCGGCAGCAGA 780 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 GCAATCCCACCCTCTAGTGAATTGAGCTTTTTTCATCCCAGCATGGATCTCAACTATGGA 840 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 AGGTCATATGAAGGTGCACGTAGGGAAGGTGCAAGCTATTGGCCTGTGTCTTTCCAAGGT 900 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 CAGACCATGTTTGTGGACGAGCGCATGGGTAACATGTCACAGGGTGGCAGCTCTGGGGTG 960 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 CCAGTATTGAAGCGAAAAGAGCCAGACTTAGGTTGGGATCTGTACCCACGTCGCTAGGTA 1020 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 TGATGTTTGTCGCAATTGTAATCGATTTTTGTTGTTTTATTTATTTGGTTTGTTCAATGT 1080 consensus_5114#1 ------------------------------------------------------------ consensus_5114#0 ACCGCTTGCTGTGGTACCTTGGACATTCTGGAGTATTTTTGGCACCTAAAAATAGGTCCC 1140 consensus_5114#1 ------------------------------------CCAACTCAGGTGGGATCTGTACCC 24 ** * * * *** consensus_5114#0 AGTTCTATTAGGTTGGAAGACATA-CCACAGAGAACTGAATAAGGCCAGCTACT-AGTTA 1198 consensus_5114#1 ACCTCGCTAGGTTGGGAAGACATAACCCCCGAGAACTGAATAAGGCCCGCTACTGAGTTA 84 * ** * * * ********** ** * ***************** ****** ***** consensus_5114#0 GATTTCAGAGATGTT--GACTTGCCATGGACA-TTGTTGGCAGCTGAAT--ACCTTGTGC 1253 consensus_5114#1 GATTTCAGAGATAGTTGGACTTGCCCTGGACACTTGTTGGCAGCTGGAATAACCTTGTGC 144 ************ * ******** ****** ************* * ********* consensus_5114#0 AGATTTGGTTC---TTTGTGAACGTAGCTTCTTTTAGTAGTC-TTCATATAGCCAAACCA 1309 consensus_5114#1 AGATTTGGTTTCTGTTGGTGAACGTAGCTTCTTTTAGTAGTCGTTCATATAGCCCAACCC 204 ********** ** ************************* *********** **** consensus_5114#0 CTGTACGGAAAGCTGAATTTATGTATATCATTGTAGAACTTATAATT-AATAGATGAAAT 1368 consensus_5114#1 CTGTACGGAAAGCTGAATTTATGTATATCCTTGTAGAACTTATAATTGAATAGATG---- 260 ***************************** ***************** ******** consensus_5114#0 GCTTCCAGTTTGTCCAAAAAAAAAAAAAAAAAA 1401 consensus_5114#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||