These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 885 fasta sequence [TTTTTTTTTTTTTTCGGGATAATTTAAAGAGCATAATTAGGATGAGTTACATTGTTCTCATGACTACTTCAATACAATGTGCCAACATCTTAACGAGCAACAACATACTACCAAAATCAACAAAAATCATTGTTGCAGTCTTACAGGCCTAATATATATAGTTCACATATAAATATTTAGCTATGCAAAATTATGACCTAAAACTCGAAAGATTTAACATGTTTAACCAAATATACCACTAAATATTTCCTTGATAGACTCCTCAAAAAAAACACGTTCATCATCATCAGAGTCATCATCGCTCAAGAACATGAATGGGCAGCCGGTGTCAAAGAAGCCAACCTCATATTTAACTTCATCATTCGCAGGGTGCTTCAGAGCAACCATCCCTTGATTCACGCAACCATGACAATAGCCATCATCATGTGATTTCACAGGCCAACATAAATAGAATTTCTTTCCGTATACTTGCTTCACTTCAGCAAAATAACATGTCACTGACCAGTATTCGGAAGTGGGTTTCTTCATCTTCACTGTGAAGTTATAATGGTGAAAAATCTTCTGATATGCATCCACACTAAAACATTGATACTGAAGCTCATCTAGATGGTATACCACATCTCTGAGTTCATTTTTTCCTTC-ATATATTTTTCAAAGGCCAACATGACTTCCTTGCTCATCCATCGTTTTCCGTTCTGAACAATTTCTTCTGTAGACAAATTATGCCGTCCTACATCTTCAGCTGCAGGGGAAAGAGACTCTGAATCATGAGATGATTCAGCATCGAACTCACATGGATAAAGCTTAGATGATTCTGGTAACTCTACATTGGGCTGAGCAGCATCTTTGGGTGGGTCGCGGAAGCCATTTATCATAGCTGCGAAT] [+] EMBL CA760183 [TTTTTTTTTTTTTTCGGGATAATTTAAAGAGCATAATTAGGATGAGTTACATTGTTCTCATGACTACTTCAATACAATGTGCCAACATCTTAACGAGCAACAACATACTACCAAAATCAACAAAAATCATTGTTGCAGTCTTACAGGCCTAATATATATAGTTCACATATAAATATTTAGCTATGCAAAATTATGACCTAAAACTCGAAAGATTTAACATGTTTAACCAAATATACCACTAAATATTTCCTTGATAGACTCCTCAAAAAAAACACGTTCATCATCATCAGAGTCATCATCGCTCAAGAACATGAATGGGCAGCCGGTGTCAAAGAAGCCAACCTCATATTTAACTTCATCATTCGCAGGGTGCTTCAGAGCAACCATCCCTTGATTCACGCAACCATGACAATAGCCATCATCATGTGATTTCACAGGCCAACATAAATAGAATTTCTTTCCGTATACTTGCTTCACTTCAGCAAAATAACATGTCACTGACCAGTATTCGGAAGTGGGTTTCTTCATCTTCACTGTGAAGTTATAATGGTGAAAAATCTTCTGATATGCATCCACACTAAAACATTGATACTGAAGCTCATCTAGATGGTATACCACATCTCTGAGTTCATTTTTTCCTTC ATATATTTTTCAAAGGCCAACATGACTTCCTTGCTCATCCATCGTTTTCCGTTC ] [-] EMBL CA998390 [ GGTGCTTCAGAGCAACCATCCC TGATTCACGCAACCATGACAATAGCCATCATCATGTGATTTCACAGGCCAACATAAATAGAATTTCTTTCCGTATACTTGCTTCACTTCAGCAAAATAACATGTCACTGACCAGTCTTCGGAAGTGGGTTTCTTCATCTTCACTGTGAAGTTATAATGGTGAAAAATCTTCTGATATGCATCCACACTAAAACATTGATACTGAAGCTCATCTAGATGGTATACCACATCTCTGAATTCATTTTTTCCTTCAATATATTTTTCAAAGGCCAACATGACTTCCTCGCTCATCCATCGTTTTCCGTTCTGAACAATTTCTTCTGTAGACAAATTATGCCGTCCTACATCTTCAGCTGCAGGGGAAAGAGACTCTGAATCATGAGATGATTCAGCATCGAACTCACATGGATAAAGCTTAGATGATTCTGGTAACTCTACATTGGGCTGAGCAGCATCTTTGGGTGGGTCGCGGAAGCCATTTATCATAGCTGCGAAT] consensusID : consensus_5129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [TTTTTTTTTTTTTTTGCAGCCTGCAAAAATAACTATTTATACGAGTGAATTTTTTTTAACAAACTGTTGGCCTGTCCATGAAGCTGCATGAACAATCAACACAATCTAGCTAAGCACAATCTTGACCTCAAACTTAAAAGATTTGAAATGTTTAACCAAATACACTATCAAATATTTCATCAATAGACTCCCCCAAAGGAACCCATTCATGGTCATCAAAGTCATCATCTCTCAAGTATATAAAGGGGCAACCGGTGTTGAAGTAGCCAACCTCAAATTCAACTTCATCATTATCAGGGTGCTTCAAAGCAACCATCCCTTGATTCACGCAACCATGACAATAGCCATTGTCACGCGGCTTCAATGGGCGGCATAAGTAAGATTTCTTCCCATATATTTGCTTCACTTCAGCAAAATAACATGTCAATAACCAGTCTTCTAAGGTGGGTTTCTTCATCTTCACAGTGAAGTTATAATGGTGAAAAACTTTCTGATATGCATCCACACTGAAACATTGATGCTGAAGCTCATCTAGACGGTATACCACATCTCTGAATTCATCTCTTCCTTCCCCCTTGTCTCGN] [+] EMBL CA760182 [TTTTTTTTTTTTTTTGCAGCCTGCAAAAATAACTATTTATACGAGTGAATTTTTTTTAACAAACTGTTGGCCTGTCCATGAAGCTGCATGAACAATCAACACAATCTAGCTAAGCACAATCTTGACCTCAAACTTAAAAGATTTGAAATGTTTAACCAAATACACTATCAAATATTTCATCAATAGACTCCCCCAAAGGAACCCATTCATGGTCATCAAAGTCATCATCTCTCAAGTATATAAAGGGGCAACCGGTGTTGAAGTAGCCAACCTCAAATTCAACTTCATCATTATCAGGGTGCTTCAAAGCAACCATCCCTTGATTCACGCAACCATGACAATAGCCATTGTCACGCGGCTTCAATGGGCGGCATAAGTAAGATTTCTTCCCATATATTTGCTTCACTTCAGCAAAATAACATGTCAATAACCAGTCTTCTAAGGTGGGTTTCTTCATCTTCACAGTGAAGTTATAATGGTGAAAAACTTTCTGATATGCATCCACACTGAAACATTGATGCTGAAGCTCATCTAGACGGTATACCACATCTCTGAATTCATCTCTTCCTTCCCCCTTGTCTCGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5129#0 TTTTTTTTTTTTTTCGGGATAATTTAAAGAGCATAATTAGGATGAGTTACATTGTTCTCA 60 consensus_5129#1 ----------------------------------------------------------TT 2 consensus_5129#0 TGACTACTTCAATACAATGTGCCAACATCTTAACGAGCAACAACATACTACCAAAATCAA 120 consensus_5129#1 TTTTTTTTTTTTTGCAGCCTGCAAAAAT---AACTATT-----TATACGAGTGAATTTTT 54 * * ** * ** *** ** ** *** * **** * ** * consensus_5129#0 CAAAAATCATTGTTGCAGTCTTACAGGCCTAATATATATAGTTCACATATAAATATTTAG 180 consensus_5129#1 TTTAACAAACTGTTGGCCTGTCCATGAAGCTGCATGAACAATCAACACA-----ATCTAG 109 ** * ***** * * * ** * * * *** * ** *** consensus_5129#0 CTATGCAAAATTATGACCTAAAACTCGAAAGATTTAACATGTTTAACCAAATATACCACT 240 consensus_5129#1 CTAAGCACAATCTTGACCTCAAACTTAAAAGATTTGAAATGTTTAACCAAATACACTATC 169 *** *** *** ****** ***** ******** * *************** ** * consensus_5129#0 AAATATTTCCTTGATAGACTCCTCAAAAAAAACACGTTCATCATCATCAGAGTCATCATC 300 consensus_5129#1 AAATATTTCATCAATAGACTCCCCCAAAGGAACCCATTCATGGTCATCAAAGTCATCATC 229 ********* * ********* * *** *** * ***** ****** ********** consensus_5129#0 GCTCAAGAACATGAATGGGCAGCCGGTGTCAAAGAAGCCAACCTCATATTTAACTTCATC 360 consensus_5129#1 TCTCAAGTATATAAAGGGGCAACCGGTGTTGAAGTAGCCAACCTCAAATTCAACTTCATC 289 ****** * ** ** ***** ******* *** *********** *** ********* consensus_5129#0 ATTCGCAGGGTGCTTCAGAGCAACCATCCCTTGATTCACGCAACCATGACAATAGCCATC 420 consensus_5129#1 ATTATCAGGGTGCTTCAAAGCAACCATCCCTTGATTCACGCAACCATGACAATAGCCATT 349 *** ************ ***************************************** consensus_5129#0 ATCATGTGATTTCACAGGCCAACATAAATAGAATTTCTTTCCGTATACTTGCTTCACTTC 480 consensus_5129#1 GTCACGCGGCTTCAATGGGCGGCATAAGTAAGATTTCTTCCCATATATTTGCTTCACTTC 409 *** * * **** ** * ***** ** ******* ** **** ************ consensus_5129#0 AGCAAAATAACATGTCACTGACCAGTATTCGGAAGTGGGTTTCTTCATCTTCACTGTGAA 540 consensus_5129#1 AGCAAAATAACATGTCAATAACCAGTCTTCTAAGGTGGGTTTCTTCATCTTCACAGTGAA 469 ***************** * ****** *** * ******************** ***** consensus_5129#0 GTTATAATGGTGAAAAATCTTCTGATATGCATCCACACTAAAACATTGATACTGAAGCTC 600 consensus_5129#1 GTTATAATGGTGAAAAACTTTCTGATATGCATCCACACTGAAACATTGATGCTGAAGCTC 529 ***************** ******************** ********** ********* consensus_5129#0 ATCTAGATGGTATACCACATCTCTGAGTTCATTTTTTCCTTCATATATTTTTCAAAGGCC 660 consensus_5129#1 ATCTAGACGGTATACCACATCTCTGAATTCATCTCTTCCTTCCCCCTTGTCTCGN----- 584 ******* ****************** ***** * ******* * * ** consensus_5129#0 AACATGACTTCCTTGCTCATCCATCGTTTTCCGTTCTGAACAATTTCTTCTGTAGACAAA 720 consensus_5129#1 ------------------------------------------------------------ consensus_5129#0 TTATGCCGTCCTACATCTTCAGCTGCAGGGGAAAGAGACTCTGAATCATGAGATGATTCA 780 consensus_5129#1 ------------------------------------------------------------ consensus_5129#0 GCATCGAACTCACATGGATAAAGCTTAGATGATTCTGGTAACTCTACATTGGGCTGAGCA 840 consensus_5129#1 ------------------------------------------------------------ consensus_5129#0 GCATCTTTGGGTGGGTCGCGGAAGCCATTTATCATAGCTGCGAAT 885 consensus_5129#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||