Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5130 cluster # 5130       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5130#0 length = 1307 sequences # 3  

consensusID : consensus_5130#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1307
fasta sequence
                              [CGGACGACTCAATCGGTTAGCTCGCTTCGTCGTCCACCGTCTCCCTCGGTCACCGTCGCCGCGCACGACTCCCATCCATGGCGATCGAGCTCTGCCCATTTAAGCCCGGGGCGCCTCTCTTCGAGGACTTGCAAACGCTTGCTGCAAGGATTGGATCCTCTGGCTTCTGTTGATTTGGGGAGCTTTTCATCGTCTCGACCGAACGGCCAGCCGCCGAGATCGAGGAAGGAGGAGATCGAAGGGCAGAGTGATTTGGCAGCGGTGGACATGGATGTGAGGTTTGGGCCCGAGGAGCAGATCGTGTGGCCGGCTTCTGTTCTTGCTGGGATCCTCATGTGCGCAGCGGTATATGATATAACTCGTGAAGTTAGCTCCCGGTGCTACAAGGGTTATAATGGACTGAATGAATTGCACAAACTTGAGTGGAACAACAGGGGATTCTCTACCTTCCACGCATTAGTTGCTGCTGTAGTCTCTTTTTATCTGCTGGTGATATCTGACCTCTTCAGTAAGGACGTCCATGGTGCCATCATAATTGATCGAAAATCATGGATGTCTGATGCCATGTTTGGTGTATCCCTGGGCTACTTCTTGACAGATTTGTTGATGATCCTCTGGCATTTCCCTTCTCTAGGAGGAAAGGAATATCTCTTGCATCATGGATTGTCCATGTATGCAATCTCTCTTGCTCTGTTGAGTGGCAAAGGACACGTGTACATCCTCATGGTCCTCATCACTGAAGCAACCACACCCTTCGTGAACCTCAGATGGTACCTTGATCTTGCAGGCCGGAAGGACTCCAAGCTTTACCTGTACAACGGGGTGGCACTGTTTGCTGGATGGCTGGTTGCTCGCGTCATACTGTTCGTATACTTCTTCGCTCATGTGTACCTTCACTTCGACCAGGTGAGGACGGTGTTCCCGCTAGGGTTCTACAGTATGATGGCGGTGCCGCCGGCGATGTCGGCGATGAACCTCCTCTGGTTCCGGAAGATCTGCAAGGGGATGGTCAAGGCCATGTCCAGCGCCAACCGAAGTCAATGCGTCAAGACAGATTAGGACTTGGGTAAAAGGAGATGCAACGCTGTCTGGAAGCCAAATGCTTACTAGCTTGCTTGTTTGATGATTAACTAAACTGTAATCAATCAATTGATTAATTGAAAACCACTCGTGCGTACAAAATCTGTTACTTAAGAGTAGATATGTCCCACACTCTTTTTCTTTGTTCTTTTAAAGACTCATTGACCGTGTATTATGGAATAGGCCAAGATGTAATACATTGATAATCTCTCTGTTTCAGGTTAAAA]

[+] EMBL AK102064             [CGGACGACTCAATCGGTTAGCTCGCTTCGTCGTCCACCGTCTCCCTCGGTCACCGTCGCCGCGCACGACTCCCATCCATGGCGATCGAGCTCTGCCCATTTAAGCCCGGGGCGCCTCTCTTCGAGGACTTGCAAACGCTTGCTGCAAGGATTGGATCCTCTGGCTTCTGTTGATTTGGGGAGCTTTTCATCGTCTCGACCGAACGGCCAGCCGCCGAGATCGAGGAAGGAGGAGATCGAAGGGCAGAGTGATTTGGCAGCGGTGGACATGGATGTGAGGTTTGGGCCCGAGGAGCAGATCGTGTGGCCGGCTTCTGTTCTTGCTGGGATCCTCATGTGCGCAGCGGTATATGATATAACTCGTGAAGTTAGCTCCCGGTGCTACAAGGGTTATAATGGACTGAATGAATTGCACAAACTTGAGTGGAACAACAGGGGATTCTCTACCTTCCACGCATTAGTTGCTGCTGTAGTCTCTTTTTATCTGCTGGTGATATCTGACCTCTTCAGTAAGGACGTCCATGGTGCCATCATAATTGATCGAAAATCATGGATGTCTGATGCCATGTTTGGTGTATCCCTGGGCTACTTCTTGACAGATTTGTTGATGATCCTCTGGCATTTCCCTTCTCTAGGAGGAAAGGAATATCTCTTGCATCATGGATTGTCCATGTATGCAATCTCTCTTGCTCTGTTGAGTGGCAAAGGACACGTGTACATCCTCATGGTCCTCATCACTGAAGCAACCACACCCTTCGTGAACCTCAGATGGTACCTTGATCTTGCAGGCCGGAAGGACTCCAAGCTTTACCTGTACAACGGGGTGGCACTGTTTGCTGGATGGCTGGTTGCTCGCGTCATACTGTTCGTATACTTCTTCGCTCATGTGTACCTTCACTTCGACCAGGTGAGGACGGTGTTCCCGCTAGGGTTCTACAGTATGATGGCGGTGCCGCCGGCGATGTCGGCGATGAACCTCCTCTGGTTCCGGAAGATCTGCAAGGGGATGGTCAAGGCCATGTCCAGCGCCAACCGAAGTCAATGCGTCAAGACAGATTAGGACTTGGGTAAAAGGAGATGCAACGCTGTCTGGAAGCCAAATGCTTACTAGCTTGCTTGTTTGATGATTAACTAAACTGTAATCAATCAATTGATTA                                                                                                                                                       ]
[+] EMBL CF294633             [                                                                                                                                           TGCTGCAAGGATTGGATCCTCTGGCTTCTGTTGATTTGGGGAGCTTTTCATCGTCTCGACCGAACGGCCAGCCGCCGAGATCGAGGAAGGAGGAGATCGAAGGGCAGAGTGATTTGGCAGCGGTGGACATGGATGTGAGGTTTGGGCCCNAGGAGCANATCGTGTGGCCGGCTTCTGTTCTTGCTGGGATCCTCATGTGCGCAGCGGTATATGATATAACTCGTGAAGTTAGCTCCCGGTGCTACAAGGGTTATAATGGACTGAATGAATTGCACAAACTTGAGTGGAACAACAGGGGATTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CF294634             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CAGATGGTACCTTGATCTTGCAGGCCGGAAGGACTCCAAGCTTTACCTGTACAACGGGGTGGCACTGTTTGCTGGATGGCTGGTTGCTCGCGTCATACTGTTCGTATACTTCTTCGCTCATGTGTACCTTCACTTCGACCAGGTGAGGACGGTGTTCCCGCTAGGGTTCTACAGTATGATGGCGGTGCCGCCGGCGATGTCGGCGATGAACCTCCTCTGGTTCCGGAAGATCTGCAAGGGGATGGTCAAGGCCATGTCCAGCGCCAACCGAAGTCAATGCGTCAAGACAGATTAGGACTTGGGTAAAAGGAGATGCAACGCTGTCTGGAAGCCAAATGCTTAAAAAATTGCTTGTTTGATGATTAAATAAACTGTAATCAATCAATTAAAAAATTGAAAACCACTCGTGCGTACAAAATCTGTTACTTAAGAGTAGATATGTCCCACACTCTTTTTCTTTGTTCTTTTAAAGACTCATTGACCGTGTATTATGGAATAGGCCAAGATGTAATACATTGATAATCTCTCTGTTTCAGGTTAAAA]


>consensus_5130#0 CGGACGACTCAATCGGTTAGCTCGCTTCGTCGTCCACCGTCTCCCTCGGTCACCGTCGCC GCGCACGACTCCCATCCATGGCGATCGAGCTCTGCCCATTTAAGCCCGGGGCGCCTCTCT TCGAGGACTTGCAAACGCTTGCTGCAAGGATTGGATCCTCTGGCTTCTGTTGATTTGGGG AGCTTTTCATCGTCTCGACCGAACGGCCAGCCGCCGAGATCGAGGAAGGAGGAGATCGAA GGGCAGAGTGATTTGGCAGCGGTGGACATGGATGTGAGGTTTGGGCCCGAGGAGCAGATC GTGTGGCCGGCTTCTGTTCTTGCTGGGATCCTCATGTGCGCAGCGGTATATGATATAACT CGTGAAGTTAGCTCCCGGTGCTACAAGGGTTATAATGGACTGAATGAATTGCACAAACTT GAGTGGAACAACAGGGGATTCTCTACCTTCCACGCATTAGTTGCTGCTGTAGTCTCTTTT TATCTGCTGGTGATATCTGACCTCTTCAGTAAGGACGTCCATGGTGCCATCATAATTGAT CGAAAATCATGGATGTCTGATGCCATGTTTGGTGTATCCCTGGGCTACTTCTTGACAGAT TTGTTGATGATCCTCTGGCATTTCCCTTCTCTAGGAGGAAAGGAATATCTCTTGCATCAT GGATTGTCCATGTATGCAATCTCTCTTGCTCTGTTGAGTGGCAAAGGACACGTGTACATC CTCATGGTCCTCATCACTGAAGCAACCACACCCTTCGTGAACCTCAGATGGTACCTTGAT CTTGCAGGCCGGAAGGACTCCAAGCTTTACCTGTACAACGGGGTGGCACTGTTTGCTGGA TGGCTGGTTGCTCGCGTCATACTGTTCGTATACTTCTTCGCTCATGTGTACCTTCACTTC GACCAGGTGAGGACGGTGTTCCCGCTAGGGTTCTACAGTATGATGGCGGTGCCGCCGGCG ATGTCGGCGATGAACCTCCTCTGGTTCCGGAAGATCTGCAAGGGGATGGTCAAGGCCATG TCCAGCGCCAACCGAAGTCAATGCGTCAAGACAGATTAGGACTTGGGTAAAAGGAGATGC AACGCTGTCTGGAAGCCAAATGCTTACTAGCTTGCTTGTTTGATGATTAACTAAACTGTA ATCAATCAATTGATTAATTGAAAACCACTCGTGCGTACAAAATCTGTTACTTAAGAGTAG ATATGTCCCACACTCTTTTTCTTTGTTCTTTTAAAGACTCATTGACCGTGTATTATGGAA TAGGCCAAGATGTAATACATTGATAATCTCTCTGTTTCAGGTTAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)