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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1083 fasta sequence
[CCTGACTACTCCCAGTCTCCAACCCACTAACCCCATCCTTCTCTCTACGCTGGGCGAGGCCACCACTGAGCGGAGCAGGAGGAAAACCAGCAGGCGAGTTAGAGTTATCGCCATGCTTGGCCTCCGCGGCCTCGTCGCCGCGTCACCTGTCACCGCGCCGCGGTGTAGGGGGCGGTGCAGTGCCGCGACCGCGGCGACGTCGGCGCCGGAGAAGACGGCTGGCCACGTCGGCCGGCTTCCACTGGCCATCGTCCCAGCGGCCGCCGCCTCGCTCTCACTTGTCCTCTGGTCCAGTCCAGTACATGCTGGCATCATGTCAGGGTTCAAAGGGATGGAATCGGTTCCAGGCCCAGATCTGCCACGAGTGGAGTTCTTGGAAAAATGGAATGGTTAGCAAACTGGCTACTACTCTCCTATATATATGTATGTATGTATGCATGCCATATCTCTCTCGAATCTCGATCGCTGAGAGTTCCTGTAATGTTCCTGCCAATTGTCACTTCTGTTGTGACATGAATTCGCTGATAAAAAAAAACTTTCTCTTAATTTGGTGCTCTCAAGCGGAGAACCAGAAGAAGTACGCCGAGTTCGACTCCAGGTTCAAGTCTTCCCAAGTGCTCAAGGATCTGCTCGAGAAGTCCAAGCAGAACAAACTGAAGTACCCCAATTTTCGCTAGCCCTGTTTCTCTTGAAGCTCTCCTGCAGCCATGTTCTTGCCATGGGTCTCTGAACAATTTATCAAAAAATTGCAGGAATGAGAGGGAGATTCAGGATAAATACTGCCTGCGTGGCGCCGAGTGGGGCGTCGGGGACTGCTCGACGGAGGGGATGTCGGACCAGGAGAAGGAGGATTTCATCGCAGAGCTGAAGAAAAGAACTGGACAAGAGTGAAAAATGTGTAGACCATTTTCCACCATGGTGGAGTTTTGCCACTGCATATATACAGCTTTTGTTGCCAGACCAGTACCACCACTATGTTTAGATCCAGGAATGGCATTTTACTCTTGGTAGCCTGATTAGCACAGGTTCTGTATTGTAGGAAGGAACAAAGTCTGAAACACTCAAAGACAATTCCACTCTTTC]
[+] EMBL AK099456 [CCTGACTACTCCCAGTCTCCAACCCACTAACCCCATCCTTCTCTCTACGCTGGGCGAGGCCACCACTGAGCGGAGCAGGAGGAAAACCAGCAGGCGAGTTAGAGTTATCGCCATGCTTGGCCTCCGCGGCCTCGTCGCCGCGTCACCTGTCACCGCGCCGCGGTGTAGGGGGCGGTGCAGTGCCGCGACCGCGGCGACGTCGGCGCCGGAGAAGACGGCTGGCCACGTCGGCCGGCTTCCACTGGCCATCGTCCCAGCGGCCGCCGCCTCGCTCTCACTTGTCCTCTGGTCCAGTCCAGTACATGCTGGCATCATGTCAGGGTTCAAAGGGATGGAATCGGTTCCAGGCCCAGATCTGCCACGAGTGGAGTTCTTGGAAAAATGGAATGGTTAGCAAACTGGCTACTACTCTCCTATATATATGTATGTATGTATGCATGCCATATCTCTCTCGAATCTCGATCGCTGAGAGTTCCTGTAATGTTCCTGCCAATTGTCACTTCTGTTGTGACATGAATTCGCTGATAAAAAAAAACTTTCTCTTAATTTGGTGCTCTCAAGCGGAGAACCAGAAGAAGTACGCCGAGTTCGACTCCAGGTTCAAGTCTTCCCAAGTGCTCAAGGATCTGCTCGAGAAGTCCAAGCAGAACAAACTGAAGTACCCCAATTTTCGCTAGCCCTGTTTCTCTTGAAGCTCTCCTGCAGCCATGTTCTTGCCATGGGTCTCTGAACAATTTATCAAAAAATTGCAGGAATGAGAGGGAGATTCAGGATAAATACTGCCTGCGTGGCGCCGAGTGGGGCGTCGGGGACTGCTCGACGGAGGGGATGTCGGACCAGGAGAAGGAGGATTTCATCGCAGAGCTGAAGAAAAGAACTGGACAAGAGTGAAAAATGTGTAGACCATTTTCCACCATGGTGGAGTTTTGCCACTGCATATATACAGCTTTTGTTGCCAGACCAGTACCACCACTATGTTTAGATCCAGGAATGGCATTTTACTCTTGGTAGCCTGATTAGCACAGGTTCTGTATTGTAGGAAGGAACAAAGTCTGAAACACTCAAAGACAATTCCACTCTTTC]
consensusID : consensus_5140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[ATGCTCGNTTGAGGGGATGTCTGACCANGANAANGAGGATTTCATCCCCCNANCTGAAGNAAAAGAACTGGACCAGAGTGAAAAATGTGTAGACCATGGGCCACCNTGGTGGAGTTTTGCCACTGCATATATACAGCTTTTGTTGCCAGANCAGTACCACCACTATGTTTNGATCCANGAATGGCATTTTACTCTTGGTAGCCTGATTAGCACAGGTTCTGTATTGTNGGAAGGAACAAAGTCTGAAACACTCAAAGACAATTCCACTCTTTCTTTTTTNTTNTNATTCAGTACAGAAATCCGACGATGCATTAGATGTNATCAGACAAAGACAATTCCACTCTTTCTTTTTTCTTCAGATTCAGTACAGAAATCCGACGATGCA]
[+] EMBL AA754557 [ATGCTCGNTTGAGGGGATGTCTGACCANGANAANGAGGATTTCATCCCCCNANCTGAAGNAAAAGAACTGGACCAGAGTGAAAAATGTGTAGACCATGGGCCACCNTGGTGGAGTTTTGCCACTGCATATATACAGCTTTTGTTGCCAGANCAGTACCACCACTATGTTTNGATCCANGAATGGCATTTTACTCTTGGTAGCCTGATTAGCACAGGTTCTGTATTGTNGGAAGGAACAAAGTCTGAAACACTCAAAGACAATTCCACTCTTTCTTTTTTNTTNTNATTCAGTACAGAAATCCGACGATGCATTAGATGTNATCAGACAAAGACAATTCCACTCTTTCTTTTTTCTTCAGATTCAGTACAGAAATCCGACGATGCA]
consensusID : consensus_5140#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 197 fasta sequence
[ACACTCAAAGACAATTCCACTCTTTCTTTTTTCTTCAGATTCAGTACAGAAATCCGACGATGCATTAGATGTAATCAGACATTTCAGAATGCGCCCACATATGTTAAATAACCTCTCATATGCTTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCTTGCCG]
[+] EMBL CF337252 [ACACTCAAAGACAATTCCACTCTTTCTTTTTTCTTCAGATTCAGTACAGAAATCCGACGATGCATTAGATGTAATCAGACATTTCAGAATGCGCCCACATATGTTAAATAACCTCTCATATGCTTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCTTGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5140#0 CCTGACTACTCCCAGTCTCCAACCCACTAACCCCATCCTTCTCTCTACGCTGGGCGAGGC 60
consensus_5140#1 ------------------------------------------------------------
consensus_5140#2 ------------------------------------------------------------
consensus_5140#0 CACCACTGAGCGGAGCAGGAGGAAAACCAGCAGGCGAGTTAGAGTTATCGCCATGCTTGG 120
consensus_5140#1 ------------------------------------------------------------
consensus_5140#2 ------------------------------------------------------------
consensus_5140#0 CCTCCGCGGCCTCGTCGCCGCGTCACCTGTCACCGCGCCGCGGTGTAGGGGGCGGTGCAG 180
consensus_5140#1 ------------------------------------------------------------
consensus_5140#2 ------------------------------------------------------------
consensus_5140#0 TGCCGCGACCGCGGCGACGTCGGCGCCGGAGAAGACGGCTGGCCACGTCGGCCGGCTTCC 240
consensus_5140#1 ------------------------------------------------------------
consensus_5140#2 ------------------------------------------------------------
consensus_5140#0 ACTGGCCATCGTCCCAGCGGCCGCCGCCTCGCTCTCACTTGTCCTCTGGTCCAGTCCAGT 300
consensus_5140#1 ------------------------------------------------------------
consensus_5140#2 ------------------------------------------------------------
consensus_5140#0 ACATGCTGGCATCATGTCAGGGTTCAAAGGGATGGAATCGGTTCCAGGCCCAGATCTGCC 360
consensus_5140#1 ------------------------------------------------------------
consensus_5140#2 ------------------------------------------------------------
consensus_5140#0 ACGAGTGGAGTTCTTGGAAAAATGGAATGGTTAGCAAACTGGCTACTACTCTCCTATATA 420
consensus_5140#1 ------------------------------------------------------------
consensus_5140#2 ------------------------------------------------------------
consensus_5140#0 TATGTATGTATGTATGCATGCCATATCTCTCTCGAATCTCGATCGCTGAGAGTTCCTGTA 480
consensus_5140#1 ------------------------------------------------------------
consensus_5140#2 ------------------------------------------------------------
consensus_5140#0 ATGTTCCTGCCAATTGTCACTTCTGTTGTGACATGAATTCGCTGATAAAAAAAAACTTTC 540
consensus_5140#1 ------------------------------------------------------------
consensus_5140#2 ------------------------------------------------------------
consensus_5140#0 TCTTAATTTGGTGCTCTCAAGCGGAGAACCAGAAGAAGTACGCCGAGTTCGACTCCAGGT 600
consensus_5140#1 ------------------------------------------------------------
consensus_5140#2 ------------------------------------------------------------
consensus_5140#0 TCAAGTCTTCCCAAGTGCTCAAGGATCTGCTCGAGAAGTCCAAGCAGAACAAACTGAAGT 660
consensus_5140#1 ------------------------------------------------------------
consensus_5140#2 ------------------------------------------------------------
consensus_5140#0 ACCCCAATTTTCGCTAGCCCTGTTTCTCTTGAAGCTCTCCTGCAGCCATGTTCTTGCCAT 720
consensus_5140#1 ------------------------------------------------------------
consensus_5140#2 ------------------------------------------------------------
consensus_5140#0 GGGTCTCTGAACAATTTATCAAAAAATTGCAGGAATGAGAGGGAGATTCAGGATAAATAC 780
consensus_5140#1 ------------------------------------------------------------
consensus_5140#2 ------------------------------------------------------------
consensus_5140#0 TGCCTGCGTGGCGCCGAGTGGGGCGTCGGGGACTGCTCGACGGAGGGGATGTCGGACCAG 840
consensus_5140#1 --------------------------------ATGCTCGNTTGAGGGGATGTCTGACCAN 28
consensus_5140#2 ------------------------------------------------------------
consensus_5140#0 GAGAAGGAGGATTTCATCGCA-GAGCTGAAGAAAA-GAACTGGACAAGAGTGAAAAATGT 898
consensus_5140#1 GANAANGAGGATTTCATCCCCCNANCTGAAGNAAAAGAACTGGACCAGAGTGAAAAATGT 88
consensus_5140#2 ----------------------------------------------ACACTCAAAGACAA 14
* * * *** *
consensus_5140#0 GTAGACCATTTTCCACCATGGTGGAGTTTTGCCACTGCATATATACAGCTTTTGTTGCCA 958
consensus_5140#1 GTAGACCATGGGCCACCNTGGTGGAGTTTTGCCACTGCATATATACAGCTTTTGTTGCCA 148
consensus_5140#2 TTCCAC--TCTTTCTTTTTTCTTCAGATTCAGTACAGAAATCCGACGATGCATTAGATGT 72
* ** * * * * ** ** ** * * ** *
consensus_5140#0 GACCAGTACCACCACTATGTTTAGATCCAGGAATGGCATTTTACTCTTGGTAGCCTGATT 1018
consensus_5140#1 GANCAGTACCACCACTATGTTTNGATCCANGAATGGCATTTTACTCTTGGTAGCCTGATT 208
consensus_5140#2 AATCAGACATTTCAGAATGC----GCCCACATATGTTAAATAACCTCTCATATGCTTCCT 128
* *** ** *** *** *** * * ** * ** ** *
consensus_5140#0 AGCACAGGTTCTGTATTGTAGGAAGGAACAAAGTCTGAAACACTCAAAGACAATTCCACT 1078
consensus_5140#1 AGCACAGGTTCTGTATTGTNGGAAGGAACAAAGTCTGAAACACTCAAAGACAATTCCACT 268
consensus_5140#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACT 188
* * * * ** ** *** *** * *** * ** *****
consensus_5140#0 CTTTC------------------------------------------------------- 1083
consensus_5140#1 CTTTCTTTTTTNTTNTNATTCAGTACAGAAATCCGACGATGCATTAGATGTNATCAGACA 328
consensus_5140#2 GTCTTGCCG--------------------------------------------------- 197
* *
consensus_5140#0 ---------------------------------------------------------
consensus_5140#1 AAGACAATTCCACTCTTTCTTTTTTCTTCAGATTCAGTACAGAAATCCGACGATGCA 385
consensus_5140#2 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||