These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5172#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 162 fasta sequence [TGTTTTAAGCTTTAATGAGTTTTGTTGTATCATCACAATCGAAATAAATAAAAGATGTTCTGGAACATATTTTTGGTACTTATGGTTTGCAATAATTTTATGTAAGATCAAAGAATCCTTGCAAGTTTATTATTAATGAGTGCAATTCAAAATGCAAATAGC] [+] EMBL AA751306 [TGTTTTAAGCTTTAATGAGTTTTGTTGTATCATCACAATCGAAATAAATAAAAGATGTTCTGGAACATATTTTTGGTACTTATGGTTTGCAATAATTTTATGTAAGATCAAAGAATCCTTGCAAGTTTATTATTAATGAGTGCAATTCAAAATGCAAATAGC] [+] EMBL AA750933 [ TAAGCTTTAATGAGTTTTGTTGTATCATCACAATCGAAATAAATAAAAGATGTTCTGGAACATGTTTTTGGTCCTTATGGTTTGCAATAATT ] consensusID : consensus_5172#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 139 fasta sequence [AATAAAAGATGTTTCCTTGGGGAAAACCAATTTTTGGTACCTTATGGTTTGCAATAATTTTATGTAAGATCAAAGAATCCTTGAAGTTTATTATTAATGAGTGCAATTCAAAATGAAATAGTTCATTTGCATTCTTCTA] [+] EMBL AA751187 [AATAAAAGATGTTTCCTTGGGGAAAACCAATTTTTGGTACCTTATGGTTTGCAATAATTTTATGTAAGATCAAAGAATCCTTGAAGTTTATTATTAATGAGTGCAATTCAAAATGAAATAGTTCATTTGCATTCTTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5172#0 TGTTTTAAGCTTTAATGAGTTTTGTTGTATCATCACAATCGAAATAAATAAAAGATGTTC 60 consensus_5172#1 ----------------------------------------------AATAAAAGATGTTT 14 ************* consensus_5172#0 T-------GGAACATATTTTTGGTAC-TTATGGTTTGCAATAATTTTATGTAAGATCAAA 112 consensus_5172#1 CCTTGGGGAAAACCAATTTTTGGTACCTTATGGTTTGCAATAATTTTATGTAAGATCAAA 74 *** *********** ********************************* consensus_5172#0 GAATCCTTGCAAGTTTATTATTAATGAGTGCAATTCAAAATGCAAATAGC---------- 162 consensus_5172#1 GAATCCTTG-AAGTTTATTATTAATGAGTGCAATTCAAAATG-AAATAGTTCATTTGCAT 132 ********* ******************************** ****** consensus_5172#0 ------- consensus_5172#1 TCTTCTA 139 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||